Wall clock time and date at job start Tue Mar 31 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35607 * 117.00123 * 2 1 4 4 C 1.39150 * 119.88409 * 0.03291 * 3 2 1 5 5 C 1.36410 * 120.44174 * 179.97438 * 4 3 2 6 6 C 1.40912 * 120.18643 * 359.96578 * 5 4 3 7 7 C 1.41245 * 120.12088 * 180.02562 * 6 5 4 8 8 H 1.08006 * 119.99530 * 24.50334 * 7 6 5 9 9 C 1.39852 * 120.00319 * 204.50420 * 7 6 5 10 10 N 1.30897 * 120.00181 * 17.84773 * 9 7 6 11 11 Si 1.86801 * 120.00333 * 197.84160 * 9 7 6 12 12 H 1.48508 * 109.46773 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47115 * 119.99702 * 11 9 7 14 14 H 1.48496 * 109.47663 * 240.00434 * 11 9 7 15 15 C 1.40614 * 119.76055 * 359.78399 * 6 5 4 16 16 C 1.38590 * 119.57137 * 0.46880 * 15 6 5 17 17 C 1.48342 * 120.09727 * 179.80115 * 16 15 6 18 18 C 1.39396 * 120.11737 * 129.97524 * 17 16 15 19 19 C 1.37993 * 119.90177 * 180.23472 * 18 17 16 20 20 C 1.38333 * 120.13460 * 359.79101 * 19 18 17 21 21 C 1.38419 * 120.23934 * 359.97438 * 20 19 18 22 22 Cl 1.73594 * 119.95224 * 179.97438 * 21 20 19 23 23 C 1.38156 * 120.09572 * 359.97438 * 21 20 19 24 24 H 1.09003 * 109.47476 * 59.99186 * 1 2 3 25 25 H 1.08999 * 109.47441 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46796 * 299.99606 * 1 2 3 27 27 H 1.07996 * 119.77871 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.90752 * 179.97438 * 5 4 3 29 29 H 0.97002 * 120.00518 * 179.97438 * 10 9 7 30 30 H 1.08006 * 120.21029 * 180.25288 * 15 6 5 31 31 H 1.07996 * 120.05136 * 359.97438 * 18 17 16 32 32 H 1.07991 * 119.93347 * 179.76892 * 19 18 17 33 33 H 1.08000 * 119.87944 * 179.97438 * 20 19 18 34 34 H 1.07993 * 120.06789 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2844 2.3737 0.0007 5 6 1.8919 3.5951 0.0012 6 6 3.2980 3.6871 0.0018 7 6 3.9256 4.9525 0.0029 8 1 3.4028 5.8141 0.3913 9 6 5.2237 5.0897 -0.4988 10 7 5.7271 4.1631 -1.2743 11 14 6.2395 6.5955 -0.0626 12 1 5.4476 7.4873 0.8224 13 1 7.4761 6.1714 0.6416 14 1 6.6022 7.3248 -1.3042 15 6 4.0742 2.5146 0.0064 16 6 3.4466 1.2789 0.0005 17 6 4.2541 0.0345 0.0009 18 6 3.9810 -0.9763 0.9211 19 6 4.7380 -2.1300 0.9206 20 6 5.7641 -2.2869 0.0062 21 6 6.0372 -1.2889 -0.9132 22 17 7.3270 -1.4934 -2.0569 23 6 5.2847 -0.1303 -0.9221 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.2063 2.3109 0.0016 28 1 1.2935 4.4941 0.0013 29 1 6.6274 4.2584 -1.6227 30 1 5.1524 2.5767 0.0110 31 1 3.1808 -0.8549 1.6361 32 1 4.5293 -2.9118 1.6358 33 1 6.3543 -3.1914 0.0098 34 1 5.4978 0.6478 -1.6400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242147428.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:30 Heat of formation + Delta-G solvation = -20.148925 kcal Electronic energy + Delta-G solvation = -19737.148607 eV Core-core repulsion = 16624.899289 eV Total energy + Delta-G solvation = -3112.249319 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.88333 -39.65067 -38.06989 -37.36653 -35.23501 -33.49247 -31.66302 -30.95323 -29.83760 -28.29192 -26.44576 -24.27604 -23.51957 -22.35603 -21.66660 -19.26431 -18.56341 -17.70307 -17.06803 -16.72915 -16.36058 -16.28509 -15.87138 -15.43485 -14.88947 -14.56509 -14.49470 -14.18863 -14.10891 -13.79015 -13.29640 -12.92119 -12.78342 -12.63235 -12.46241 -12.39848 -12.33615 -12.23750 -11.88263 -11.71254 -11.57085 -11.18589 -10.87774 -10.09585 -9.68864 -9.19054 -8.83189 -8.54993 -6.22396 0.12798 0.32937 0.97633 1.03384 1.19761 1.39002 1.49664 1.53404 2.22062 2.64350 2.76722 2.89537 3.65581 3.81334 4.01024 4.20762 4.28437 4.38984 4.46281 4.51759 4.53782 4.64633 4.78887 4.84304 5.00891 5.06224 5.19029 5.27117 5.30682 5.40946 5.48304 5.58677 5.72300 5.84606 5.95286 6.07064 6.25535 6.56308 6.80326 6.95591 7.07965 8.36926 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.011476 B = 0.006729 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.297267 B = 4160.142807 C = 6190.019233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.332 6.332 3 C 0.020 3.980 4 C -0.169 4.169 5 C -0.198 4.198 6 C 0.053 3.947 7 C -0.497 4.497 8 H 0.075 0.925 9 C 0.036 3.964 10 N -0.828 5.828 11 Si 0.976 3.024 12 H -0.257 1.257 13 H -0.268 1.268 14 H -0.268 1.268 15 C -0.134 4.134 16 C -0.080 4.080 17 C -0.020 4.020 18 C -0.099 4.099 19 C -0.099 4.099 20 C -0.117 4.117 21 C -0.041 4.041 22 Cl -0.076 7.076 23 C -0.119 4.119 24 H 0.046 0.954 25 H 0.117 0.883 26 H 0.054 0.946 27 H 0.132 0.868 28 H 0.106 0.894 29 H 0.285 0.715 30 H 0.109 0.891 31 H 0.130 0.870 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.840 -10.927 2.927 11.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.247 6.247 3 C -0.024 4.024 4 C -0.188 4.188 5 C -0.218 4.218 6 C 0.051 3.949 7 C -0.527 4.527 8 H 0.094 0.906 9 C -0.178 4.178 10 N -0.455 5.455 11 Si 0.797 3.203 12 H -0.181 1.181 13 H -0.192 1.192 14 H -0.193 1.193 15 C -0.153 4.153 16 C -0.081 4.081 17 C -0.020 4.020 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.135 4.135 21 C -0.068 4.068 22 Cl -0.047 7.047 23 C -0.138 4.138 24 H 0.065 0.935 25 H 0.135 0.865 26 H 0.073 0.927 27 H 0.150 0.850 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.148 0.852 32 H 0.186 0.814 33 H 0.177 0.823 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.447 -11.186 2.676 11.593 hybrid contribution 0.340 1.341 -0.395 1.438 sum -1.108 -9.846 2.281 10.167 Atomic orbital electron populations 1.23105 0.78299 1.04442 1.01065 1.85863 1.21733 1.26649 1.90473 1.18618 0.90602 0.84278 1.08915 1.20671 0.99218 0.91945 1.06955 1.20856 0.94295 0.96548 1.10102 1.17859 0.91866 0.93780 0.91412 1.19683 0.99850 0.95116 1.38089 0.90638 1.26645 0.98556 1.00681 0.91959 1.69886 1.16756 1.35410 1.23410 0.85251 0.78069 0.77870 0.79108 1.18087 1.19235 1.19257 1.21200 0.99126 0.90244 1.04766 1.18131 0.90029 0.92531 1.07379 1.18821 0.94136 0.93862 0.95173 1.21420 0.99495 0.93027 0.97782 1.21373 0.94101 0.97528 0.98722 1.21331 0.99133 0.98638 0.94433 1.20892 0.93399 0.96769 0.95698 1.98333 1.49042 1.97271 1.60038 1.21109 0.96010 0.96870 0.99776 0.93508 0.86530 0.92728 0.85023 0.87619 0.90411 0.87299 0.85224 0.81372 0.82294 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.80 113.37 1.11 1.79 16 2 O -0.33 -12.27 8.79 -89.18 -0.78 -13.06 16 3 C 0.02 0.88 6.62 23.01 0.15 1.03 16 4 C -0.17 -7.23 8.95 22.06 0.20 -7.03 16 5 C -0.20 -9.55 9.72 22.50 0.22 -9.33 16 6 C 0.05 2.85 5.57 -21.31 -0.12 2.73 16 7 C -0.50 -26.81 9.04 23.40 0.21 -26.60 16 8 H 0.08 3.92 7.91 -2.91 -0.02 3.90 16 9 C 0.04 1.81 5.13 85.22 0.44 2.25 16 10 N -0.83 -43.83 10.97 21.81 0.24 -43.59 16 11 Si 0.98 38.88 29.59 68.60 2.03 40.91 16 12 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 13 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 14 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 15 C -0.13 -7.08 8.14 22.93 0.19 -6.89 16 16 C -0.08 -3.78 5.48 -19.98 -0.11 -3.89 16 17 C -0.02 -0.81 5.27 -20.05 -0.11 -0.91 16 18 C -0.10 -3.33 8.77 22.49 0.20 -3.13 16 19 C -0.10 -2.58 10.03 22.23 0.22 -2.35 16 20 C -0.12 -3.12 9.82 22.34 0.22 -2.90 16 21 C -0.04 -1.36 6.31 22.29 0.14 -1.22 16 22 Cl -0.08 -2.27 28.95 -2.72 -0.08 -2.35 16 23 C -0.12 -4.78 9.29 22.51 0.21 -4.58 16 24 H 0.05 1.20 7.65 -2.39 -0.02 1.18 16 25 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.05 1.32 7.65 -2.38 -0.02 1.30 16 27 H 0.13 4.62 6.26 -2.91 -0.02 4.60 16 28 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 29 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 30 H 0.11 6.11 6.15 -2.91 -0.02 6.10 16 31 H 0.13 4.19 7.66 -2.91 -0.02 4.17 16 32 H 0.17 2.91 8.06 -2.92 -0.02 2.89 16 33 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 34 H 0.11 4.91 8.04 -2.91 -0.02 4.88 16 Total: -1.00 -61.16 309.51 5.70 -55.46 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 1.12 Total: 23.66 kcal Atomic # 6 Polarization: -64.21 SS G_CDS: 3.17 Total: -61.04 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.24 Total: -43.59 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.78 Total: -13.06 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Atomic # 17 Polarization: -2.27 SS G_CDS: -0.08 Total: -2.35 kcal Total: -61.16 5.70 -55.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242147428.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.312 kcal (2) G-P(sol) polarization free energy of solvation -61.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds