Wall clock time and date at job start Tue Mar 31 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86808 * 119.99842 * 2 1 4 4 H 1.48499 * 109.47069 * 269.99841 * 3 2 1 5 5 H 1.48496 * 109.46927 * 29.99975 * 3 2 1 6 6 H 1.48503 * 109.46945 * 149.99908 * 3 2 1 7 7 C 1.38637 * 120.00613 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00325 * 180.02562 * 7 2 1 9 9 O 1.34817 * 119.99349 * 359.97438 * 7 2 1 10 10 C 1.35699 * 116.99733 * 185.06362 * 9 7 2 11 11 C 1.38735 * 120.13192 * 354.40449 * 10 9 7 12 12 C 1.38132 * 120.04577 * 180.31850 * 11 10 9 13 13 C 1.38421 * 120.31061 * 359.68207 * 12 11 10 14 14 C 1.38047 * 120.26001 * 0.02562 * 13 12 11 15 15 C 1.39217 * 119.94836 * 0.02562 * 14 13 12 16 16 C 1.48417 * 120.15297 * 180.02562 * 15 14 13 17 17 C 1.40874 * 126.22259 * 129.97497 * 16 15 14 18 18 N 1.30671 * 108.10206 * 180.02562 * 17 16 15 19 19 N 1.40013 * 108.53623 * 0.02562 * 18 17 16 20 20 C 1.46499 * 125.89186 * 180.02562 * 19 18 17 21 21 C 1.50701 * 109.47513 * 304.96218 * 20 19 18 22 22 O 1.20823 * 119.99872 * 0.02562 * 21 20 19 23 23 O 1.34228 * 119.99926 * 179.97438 * 21 20 19 24 24 C 1.34861 * 108.21508 * 0.02562 * 19 18 17 25 25 H 0.96991 * 119.99975 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.97893 * 0.02562 * 11 10 9 27 27 H 1.08005 * 119.84674 * 179.70187 * 12 11 10 28 28 H 1.08008 * 119.87013 * 180.02562 * 13 12 11 29 29 H 1.07999 * 120.02679 * 180.02562 * 14 13 12 30 30 H 1.08002 * 125.95240 * 0.02562 * 17 16 15 31 31 H 1.09005 * 109.46855 * 64.96637 * 20 19 18 32 32 H 1.08998 * 109.47440 * 184.95931 * 20 19 18 33 33 H 0.96702 * 116.99767 * 180.02562 * 23 21 20 34 34 H 1.07998 * 126.20044 * 179.72945 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4403 0.7001 7 6 2.0090 -1.2006 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3349 -2.3681 0.0016 10 6 2.0700 -3.5037 0.1088 11 6 3.4558 -3.4402 0.0943 12 6 4.2022 -4.5980 0.1969 13 6 3.5744 -5.8253 0.3212 14 6 2.1962 -5.9026 0.3431 15 6 1.4333 -4.7427 0.2393 16 6 -0.0486 -4.8206 0.2630 17 6 -0.9096 -4.0548 1.0734 18 7 -2.1390 -4.4097 0.8085 19 7 -2.1124 -5.4082 -0.1728 20 6 -3.2813 -6.0765 -0.7499 21 6 -4.1157 -6.6723 0.3546 22 8 -3.7697 -6.5507 1.5058 23 8 -5.2437 -7.3372 0.0594 24 6 -0.8250 -5.6484 -0.4949 25 1 -0.4850 0.8400 -0.0004 26 1 3.9513 -2.4854 -0.0021 27 1 5.2809 -4.5453 0.1804 28 1 4.1650 -6.7260 0.4013 29 1 1.7103 -6.8622 0.4406 30 1 -0.6065 -3.3048 1.7890 31 1 -3.8771 -5.3517 -1.3048 32 1 -2.9518 -6.8676 -1.4235 33 1 -5.7456 -7.7013 0.8015 34 1 -0.4723 -6.3681 -1.2188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242184964.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:11 Heat of formation + Delta-G solvation = -2.283353 kcal Electronic energy + Delta-G solvation = -21804.566393 eV Core-core repulsion = 18284.675370 eV Total energy + Delta-G solvation = -3519.891023 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.90654 -39.99062 -38.77416 -36.32117 -36.22800 -33.37643 -32.25027 -31.23126 -29.00468 -28.79932 -26.93280 -25.29123 -22.71428 -21.99126 -21.39607 -20.03051 -19.75679 -18.27196 -17.89459 -17.27830 -16.75194 -16.24165 -16.00887 -14.79448 -14.57388 -14.39316 -14.09835 -13.93453 -13.50344 -13.48351 -13.05456 -12.78663 -12.62744 -12.33354 -12.17505 -11.66487 -11.64996 -11.30895 -10.91767 -10.82732 -10.76328 -10.68393 -10.41393 -10.05637 -9.30858 -8.90620 -8.82223 -8.52148 -7.65883 -6.99234 -6.40581 -3.99000 1.92640 2.03384 2.28727 2.43092 2.58262 3.09732 3.14990 3.16391 3.20694 3.56781 3.99444 4.51818 4.63933 4.94148 4.98849 5.12625 5.22412 5.29905 5.50180 5.70063 5.77852 5.94737 6.15834 6.23364 6.27459 6.29006 6.56903 6.75107 6.92203 7.13322 7.15209 7.27258 7.38188 7.42022 7.50646 7.72318 7.85812 8.03148 8.25362 9.04402 9.75512 10.76154 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.004909 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.472256 B = 5702.281369 C = 7269.666223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.042 3.958 3 Si 0.937 3.063 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.394 4.394 8 H 0.091 0.909 9 O -0.165 6.165 10 C 0.162 3.838 11 C -0.234 4.234 12 C -0.075 4.075 13 C -0.214 4.214 14 C -0.067 4.067 15 C -0.090 4.090 16 C -0.146 4.146 17 C 0.097 3.903 18 N -0.282 5.282 19 N -0.385 5.385 20 C 0.156 3.844 21 C 0.460 3.540 22 O -0.481 6.481 23 O -0.520 6.520 24 C 0.043 3.957 25 H 0.269 0.731 26 H 0.127 0.873 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.185 0.815 31 H 0.124 0.876 32 H 0.133 0.867 33 H 0.412 0.588 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.803 -12.634 -2.674 13.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.163 4.163 3 Si 0.762 3.238 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.470 4.470 8 H 0.108 0.892 9 O -0.067 6.067 10 C 0.108 3.892 11 C -0.253 4.253 12 C -0.093 4.093 13 C -0.233 4.233 14 C -0.085 4.085 15 C -0.092 4.092 16 C -0.157 4.157 17 C -0.092 4.092 18 N -0.101 5.101 19 N -0.170 5.170 20 C 0.031 3.969 21 C 0.299 3.701 22 O -0.365 6.365 23 O -0.332 6.332 24 C -0.099 4.099 25 H 0.079 0.921 26 H 0.145 0.855 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.202 0.798 31 H 0.141 0.859 32 H 0.151 0.849 33 H 0.272 0.728 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.288 -12.088 -2.482 13.426 hybrid contribution 1.105 0.498 0.226 1.233 sum -4.183 -11.590 -2.256 12.527 Atomic orbital electron populations 1.70051 1.05797 1.27538 1.45648 1.25238 0.95780 0.98651 0.96612 0.85770 0.78989 0.80393 0.78621 1.20017 1.20328 1.19230 1.21319 0.91781 0.80962 1.52961 0.89191 1.83999 1.33904 1.11101 1.77720 1.19333 0.89925 0.87596 0.92365 1.21103 0.93587 0.99015 1.11599 1.20776 0.98406 0.92424 0.97737 1.20497 0.94163 0.96898 1.11763 1.20666 0.93330 0.95966 0.98581 1.17154 0.89474 0.90929 1.11689 1.18681 0.93029 1.01788 1.02229 1.24045 0.88863 0.97717 0.98559 1.77312 1.21908 1.04706 1.06157 1.47701 1.03771 1.31674 1.33830 1.20726 0.86039 0.98316 0.91771 1.23560 0.79870 0.75962 0.90741 1.90827 1.69592 1.54080 1.21992 1.84478 1.36645 1.67122 1.45004 1.22327 0.83203 1.02549 1.01810 0.92107 0.85529 0.87644 0.87701 0.87206 0.79845 0.85869 0.84894 0.72842 0.81205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.76 13.67 55.48 0.76 -24.00 16 2 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 3 Si 0.94 20.41 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.39 -10.76 9.49 30.88 0.29 -10.47 16 8 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 9 O -0.16 -4.53 8.67 0.24 0.00 -4.53 16 10 C 0.16 3.85 6.63 -38.77 -0.26 3.59 16 11 C -0.23 -5.01 9.16 -39.44 -0.36 -5.37 16 12 C -0.08 -1.36 10.03 -39.55 -0.40 -1.76 16 13 C -0.21 -3.66 10.03 -39.58 -0.40 -4.06 16 14 C -0.07 -1.20 9.70 -39.29 -0.38 -1.58 16 15 C -0.09 -1.89 5.77 -104.71 -0.60 -2.49 16 16 C -0.15 -2.99 5.31 -105.34 -0.56 -3.55 16 17 C 0.10 2.13 11.31 -17.05 -0.19 1.94 16 18 N -0.28 -5.95 11.60 30.81 0.36 -5.59 16 19 N -0.39 -6.44 3.39 -62.26 -0.21 -6.66 16 20 C 0.16 1.72 7.09 -5.19 -0.04 1.68 16 21 C 0.46 5.58 8.36 36.01 0.30 5.88 16 22 O -0.48 -8.16 16.46 -18.75 -0.31 -8.47 16 23 O -0.52 -4.30 13.42 -39.25 -0.53 -4.83 16 24 C 0.04 0.72 11.31 -16.86 -0.19 0.53 16 25 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.13 2.71 5.64 -52.48 -0.30 2.42 16 27 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 28 H 0.10 1.49 8.06 -52.48 -0.42 1.07 16 29 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.18 4.21 8.06 -52.49 -0.42 3.78 16 31 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.13 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.41 1.85 9.10 45.56 0.41 2.26 16 34 H 0.17 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 312.54 15.07 4.71 4.71 Total: -1.00 -35.71 312.54 -5.37 -41.08 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -2.25 Total: 7.51 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -2.88 Total: -14.62 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.90 Total: -36.24 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.83 Total: -17.82 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.71 -5.37 -41.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242184964.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.794 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds