Wall clock time and date at job start Tue Mar 31 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86808 * 119.99842 * 2 1 4 4 H 1.48499 * 109.47069 * 269.99841 * 3 2 1 5 5 H 1.48496 * 109.46927 * 29.99975 * 3 2 1 6 6 H 1.48503 * 109.46945 * 149.99908 * 3 2 1 7 7 C 1.38637 * 120.00613 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00325 * 180.02562 * 7 2 1 9 9 O 1.34817 * 119.99349 * 359.97438 * 7 2 1 10 10 C 1.35699 * 116.99733 * 185.06362 * 9 7 2 11 11 C 1.38735 * 120.13192 * 354.40449 * 10 9 7 12 12 C 1.38132 * 120.04577 * 180.31850 * 11 10 9 13 13 C 1.38421 * 120.31061 * 359.68207 * 12 11 10 14 14 C 1.38047 * 120.26001 * 0.02562 * 13 12 11 15 15 C 1.39217 * 119.94836 * 0.02562 * 14 13 12 16 16 C 1.48417 * 120.15297 * 180.02562 * 15 14 13 17 17 C 1.40874 * 126.22259 * 129.97497 * 16 15 14 18 18 N 1.30671 * 108.10206 * 180.02562 * 17 16 15 19 19 N 1.40013 * 108.53623 * 0.02562 * 18 17 16 20 20 C 1.46499 * 125.89186 * 180.02562 * 19 18 17 21 21 C 1.50701 * 109.47513 * 304.96218 * 20 19 18 22 22 O 1.20823 * 119.99872 * 0.02562 * 21 20 19 23 23 O 1.34228 * 119.99926 * 179.97438 * 21 20 19 24 24 C 1.34861 * 108.21508 * 0.02562 * 19 18 17 25 25 H 0.96991 * 119.99975 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.97893 * 0.02562 * 11 10 9 27 27 H 1.08005 * 119.84674 * 179.70187 * 12 11 10 28 28 H 1.08008 * 119.87013 * 180.02562 * 13 12 11 29 29 H 1.07999 * 120.02679 * 180.02562 * 14 13 12 30 30 H 1.08002 * 125.95240 * 0.02562 * 17 16 15 31 31 H 1.09005 * 109.46855 * 64.96637 * 20 19 18 32 32 H 1.08998 * 109.47440 * 184.95931 * 20 19 18 33 33 H 0.96702 * 116.99767 * 180.02562 * 23 21 20 34 34 H 1.07998 * 126.20044 * 179.72945 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4403 0.7001 7 6 2.0090 -1.2006 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3349 -2.3681 0.0016 10 6 2.0700 -3.5037 0.1088 11 6 3.4558 -3.4402 0.0943 12 6 4.2022 -4.5980 0.1969 13 6 3.5744 -5.8253 0.3212 14 6 2.1962 -5.9026 0.3431 15 6 1.4333 -4.7427 0.2393 16 6 -0.0486 -4.8206 0.2630 17 6 -0.9096 -4.0548 1.0734 18 7 -2.1390 -4.4097 0.8085 19 7 -2.1124 -5.4082 -0.1728 20 6 -3.2813 -6.0765 -0.7499 21 6 -4.1157 -6.6723 0.3546 22 8 -3.7697 -6.5507 1.5058 23 8 -5.2437 -7.3372 0.0594 24 6 -0.8250 -5.6484 -0.4949 25 1 -0.4850 0.8400 -0.0004 26 1 3.9513 -2.4854 -0.0021 27 1 5.2809 -4.5453 0.1804 28 1 4.1650 -6.7260 0.4013 29 1 1.7103 -6.8622 0.4406 30 1 -0.6065 -3.3048 1.7890 31 1 -3.8771 -5.3517 -1.3048 32 1 -2.9518 -6.8676 -1.4235 33 1 -5.7456 -7.7013 0.8015 34 1 -0.4723 -6.3681 -1.2188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242184964.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:10 Heat of formation + Delta-G solvation = -28.106038 kcal Electronic energy + Delta-G solvation = -21805.686149 eV Core-core repulsion = 18284.675370 eV Total energy + Delta-G solvation = -3521.010778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.22434 -41.06975 -40.40855 -37.94783 -37.16285 -34.63309 -34.18918 -32.72690 -30.54385 -30.15507 -28.29730 -27.22357 -23.96115 -23.37848 -22.95819 -21.33580 -21.21355 -19.69605 -19.19207 -18.82984 -17.89808 -17.47755 -17.06700 -16.38458 -16.22589 -15.90865 -15.48996 -15.45238 -15.08408 -15.01349 -14.31369 -14.16799 -14.01263 -13.69528 -13.48632 -13.46332 -12.95305 -12.59762 -12.49054 -12.37018 -12.24772 -12.09460 -11.86597 -11.53411 -11.07323 -10.74665 -10.33271 -10.01298 -9.18607 -8.60369 -8.38829 -6.04933 0.49972 0.84586 0.97018 1.11479 1.36177 1.40539 1.45330 1.52762 1.99208 2.12439 2.21044 2.93502 3.28353 3.62993 3.64416 3.98940 4.12018 4.16631 4.22175 4.29797 4.35069 4.44247 4.74524 4.75222 4.80132 5.04631 5.20306 5.24261 5.40221 5.53418 5.59322 5.80262 5.82695 5.88417 6.06924 6.17036 6.34980 6.75175 6.92413 7.05701 7.91125 8.82608 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.004909 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.472256 B = 5702.281369 C = 7269.666223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.019 4.019 3 Si 1.011 2.989 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.254 1.254 7 C -0.411 4.411 8 H 0.098 0.902 9 O -0.213 6.213 10 C 0.120 3.880 11 C -0.249 4.249 12 C -0.077 4.077 13 C -0.189 4.189 14 C -0.064 4.064 15 C -0.094 4.094 16 C -0.188 4.188 17 C 0.066 3.934 18 N -0.315 5.315 19 N -0.375 5.375 20 C 0.141 3.859 21 C 0.470 3.530 22 O -0.539 6.539 23 O -0.502 6.502 24 C 0.075 3.925 25 H 0.268 0.732 26 H 0.115 0.885 27 H 0.141 0.859 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.191 0.809 33 H 0.431 0.569 34 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.642 -16.042 -4.323 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.217 4.217 3 Si 0.832 3.168 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.178 1.178 7 C -0.488 4.488 8 H 0.115 0.885 9 O -0.118 6.118 10 C 0.068 3.932 11 C -0.268 4.268 12 C -0.095 4.095 13 C -0.207 4.207 14 C -0.082 4.082 15 C -0.096 4.096 16 C -0.199 4.199 17 C -0.121 4.121 18 N -0.136 5.136 19 N -0.159 5.159 20 C 0.020 3.980 21 C 0.311 3.689 22 O -0.428 6.428 23 O -0.316 6.316 24 C -0.070 4.070 25 H 0.077 0.923 26 H 0.133 0.867 27 H 0.158 0.842 28 H 0.168 0.832 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.161 0.839 32 H 0.208 0.792 33 H 0.293 0.707 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -4.136 -15.562 -4.137 16.625 hybrid contribution 0.704 1.128 0.699 1.502 sum -3.431 -14.434 -3.438 15.229 Atomic orbital electron populations 1.70219 1.07794 1.28236 1.48938 1.26422 0.96682 1.02350 0.96236 0.84685 0.77859 0.75239 0.79060 1.18975 1.20061 1.17809 1.21772 0.92362 0.81853 1.52766 0.88486 1.83986 1.35092 1.11926 1.80826 1.19961 0.91168 0.87791 0.94237 1.21236 0.93084 1.00151 1.12344 1.21176 1.00095 0.91630 0.96592 1.21083 0.94191 0.97941 1.07519 1.21111 0.93803 0.96212 0.97104 1.17534 0.90326 0.90977 1.10776 1.18861 0.93233 1.03688 1.04085 1.23713 0.90300 0.98401 0.99640 1.77183 1.21387 1.06717 1.08264 1.48082 1.05738 1.30128 1.31945 1.21424 0.84753 1.00094 0.91778 1.23671 0.80216 0.75048 0.89917 1.90833 1.71186 1.56519 1.24239 1.84433 1.35285 1.66114 1.45723 1.22999 0.82434 1.01151 1.00374 0.92324 0.86721 0.84170 0.83175 0.83555 0.83321 0.83859 0.79156 0.70676 0.75812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.80 13.67 21.61 0.30 -56.51 16 2 C -0.02 -1.09 5.49 84.83 0.47 -0.63 16 3 Si 1.01 43.77 29.55 68.60 2.03 45.80 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.41 -23.97 9.49 67.92 0.64 -23.32 16 8 H 0.10 5.23 5.21 -2.91 -0.02 5.22 16 9 O -0.21 -12.58 8.67 -22.04 -0.19 -12.77 16 10 C 0.12 5.90 6.63 22.79 0.15 6.05 16 11 C -0.25 -10.79 9.16 22.36 0.20 -10.59 16 12 C -0.08 -2.58 10.03 22.29 0.22 -2.35 16 13 C -0.19 -5.57 10.03 22.27 0.22 -5.35 16 14 C -0.06 -2.07 9.70 22.46 0.22 -1.85 16 15 C -0.09 -3.93 5.77 -19.92 -0.11 -4.04 16 16 C -0.19 -7.78 5.31 -20.33 -0.11 -7.89 16 17 C 0.07 3.16 11.31 85.51 0.97 4.13 16 18 N -0.32 -13.85 11.60 -56.44 -0.65 -14.51 16 19 N -0.37 -11.98 3.39 -350.89 -1.19 -13.17 16 20 C 0.14 2.62 7.09 85.63 0.61 3.22 16 21 C 0.47 10.35 8.36 71.24 0.60 10.94 16 22 O -0.54 -18.10 16.46 21.97 0.36 -17.74 16 23 O -0.50 -6.73 13.42 -51.40 -0.69 -7.42 16 24 C 0.07 2.31 11.31 83.82 0.95 3.26 16 25 H 0.27 15.47 8.31 -92.72 -0.77 14.70 16 26 H 0.11 5.11 5.64 -2.91 -0.02 5.09 16 27 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 28 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 29 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 30 H 0.15 7.83 8.06 -2.91 -0.02 7.81 16 31 H 0.14 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.19 1.35 8.07 -2.39 -0.02 1.33 16 33 H 0.43 2.70 9.10 -74.06 -0.67 2.03 16 34 H 0.23 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -87.80 312.54 5.47 -82.33 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.49 Total: 22.40 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 5.03 Total: -28.41 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -1.55 Total: -84.19 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.52 Total: -37.93 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -87.80 5.47 -82.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242184964.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.224 kcal (2) G-P(sol) polarization free energy of solvation -87.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds