Wall clock time and date at job start Tue Mar 31 2020 05:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36234 * 119.94137 * 2 1 4 4 C 1.40936 * 119.88243 * 179.97438 * 3 2 1 5 5 C 1.41002 * 120.11039 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99816 * 334.43356 * 5 4 3 7 7 C 1.39984 * 119.99813 * 154.43798 * 5 4 3 8 8 N 1.30807 * 119.99995 * 343.16574 * 7 5 4 9 9 Si 1.86797 * 119.99523 * 163.16702 * 7 5 4 10 10 H 1.48503 * 109.47272 * 60.00055 * 9 7 5 11 11 H 1.48507 * 109.46963 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47444 * 299.99883 * 9 7 5 13 13 C 1.40966 * 119.77706 * 359.97438 * 4 3 2 14 14 C 1.36196 * 119.88242 * 0.25405 * 13 4 3 15 15 C 1.39988 * 119.94537 * 180.02562 * 2 1 3 16 16 C 1.47855 * 119.88128 * 359.97438 * 15 2 1 17 17 C 1.39641 * 120.16827 * 244.99205 * 16 15 2 18 18 C 1.37867 * 119.92405 * 180.02562 * 17 16 15 19 19 C 1.38506 * 120.29039 * 359.97438 * 18 17 16 20 20 C 1.38281 * 120.35118 * 0.04551 * 19 18 17 21 21 Cl 1.73596 * 119.96754 * 180.02562 * 20 19 18 22 22 C 1.38676 * 120.06252 * 359.67477 * 20 19 18 23 23 O 1.35796 * 120.14195 * 180.30650 * 22 20 19 24 24 H 1.08999 * 109.46933 * 90.00400 * 1 2 3 25 25 H 1.09002 * 109.46689 * 210.00107 * 1 2 3 26 26 H 1.08993 * 109.47263 * 330.00218 * 1 2 3 27 27 H 1.07999 * 120.05837 * 0.02562 * 3 2 1 28 28 H 0.97003 * 119.99777 * 179.97438 * 8 7 5 29 29 H 1.07997 * 120.05692 * 179.97438 * 13 4 3 30 30 H 1.08001 * 119.94277 * 179.74541 * 14 13 4 31 31 H 1.07998 * 120.04121 * 0.02844 * 17 16 15 32 32 H 1.07999 * 119.85104 * 180.02562 * 18 17 16 33 33 H 1.07998 * 119.82349 * 180.02562 * 19 18 17 34 34 H 0.96707 * 114.00242 * 270.27060 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.1805 0.0000 4 6 3.5963 1.1791 0.0005 5 6 4.3049 2.3981 0.0000 6 1 3.8470 3.2887 -0.4044 7 6 5.6020 2.4539 0.5236 8 7 6.0363 1.4939 1.2987 9 14 6.7124 3.8994 0.1153 10 1 6.0806 5.1578 0.5871 11 1 8.0240 3.7218 0.7889 12 1 6.9155 3.9682 -1.3541 13 6 4.2951 -0.0452 0.0016 14 6 3.6059 -1.2199 -0.0031 15 6 2.2058 -1.2130 -0.0005 16 6 1.4626 -2.4912 -0.0005 17 6 1.5516 -3.3547 1.0933 18 6 0.8569 -4.5455 1.0878 19 6 0.0697 -4.8901 0.0015 20 6 -0.0264 -4.0440 -1.0881 21 17 -1.0165 -4.4855 -2.4440 22 6 0.6615 -2.8399 -1.0955 23 8 0.5632 -2.0050 -2.1619 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5138 27 1 1.6470 2.1158 0.0004 28 1 6.9352 1.5324 1.6612 29 1 5.3751 -0.0516 0.0016 30 1 4.1404 -2.1584 -0.0064 31 1 2.1637 -3.0899 1.9427 32 1 0.9262 -5.2122 1.9346 33 1 -0.4715 -5.8246 0.0053 34 1 1.2255 -2.1642 -2.8485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242367439.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:13 Heat of formation + Delta-G solvation = -19.002540 kcal Electronic energy + Delta-G solvation = -19710.059556 eV Core-core repulsion = 16597.859948 eV Total energy + Delta-G solvation = -3112.199608 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.66294 -37.58733 -36.34723 -36.18776 -34.10544 -31.48957 -31.21581 -29.57268 -28.76128 -25.81377 -25.23505 -22.38920 -22.11518 -20.41086 -19.89270 -18.03640 -16.97556 -16.37191 -15.68741 -15.30146 -15.17201 -14.22805 -14.10532 -13.74564 -13.64328 -12.81536 -12.69125 -12.60410 -12.12838 -11.98377 -11.83448 -11.56955 -11.47045 -11.20235 -11.11317 -10.94205 -10.89059 -10.71892 -10.40819 -10.11058 -9.68676 -9.48910 -9.26116 -8.43430 -8.30940 -7.49268 -7.20618 -6.87282 -4.44167 1.36096 1.41865 2.27928 2.68086 3.00627 3.03103 3.06370 3.12540 3.80187 3.84868 4.45258 4.52428 5.05845 5.29499 5.46807 5.55943 5.59509 5.91124 5.98986 6.08549 6.18135 6.34316 6.35739 6.45937 6.55917 6.70195 6.78470 6.88836 6.97438 6.98870 7.19355 7.30271 7.57709 7.82333 7.98480 7.99502 8.05254 8.21076 8.54162 8.78605 8.89230 10.06000 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.031884 B = 0.003987 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.978053 B = 7020.757552 C = 7350.359187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.018 4.018 3 C -0.230 4.230 4 C 0.122 3.878 5 C -0.455 4.455 6 H 0.079 0.921 7 C 0.076 3.924 8 N -0.786 5.786 9 Si 0.910 3.090 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.262 1.262 13 C -0.173 4.173 14 C -0.075 4.075 15 C -0.206 4.206 16 C 0.006 3.994 17 C -0.106 4.106 18 C -0.118 4.118 19 C -0.124 4.124 20 C -0.062 4.062 21 Cl -0.077 7.077 22 C 0.112 3.888 23 O -0.476 6.476 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.093 0.907 28 H 0.283 0.717 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.025 -9.098 -2.271 11.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.019 4.019 3 C -0.249 4.249 4 C 0.120 3.880 5 C -0.484 4.484 6 H 0.097 0.903 7 C -0.143 4.143 8 N -0.410 5.410 9 Si 0.734 3.266 10 H -0.189 1.189 11 H -0.202 1.202 12 H -0.187 1.187 13 C -0.192 4.192 14 C -0.094 4.094 15 C -0.208 4.208 16 C 0.006 3.994 17 C -0.124 4.124 18 C -0.136 4.136 19 C -0.143 4.143 20 C -0.089 4.089 21 Cl -0.048 7.048 22 C 0.066 3.934 23 O -0.285 6.285 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.135 0.865 30 H 0.105 0.895 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -6.376 -8.953 -1.933 11.160 hybrid contribution 0.898 0.346 -0.418 1.049 sum -5.479 -8.608 -2.351 10.471 Atomic orbital electron populations 1.20698 0.93701 1.00277 1.01346 1.19015 0.93497 0.92418 0.96929 1.20530 0.94179 0.95419 1.14801 1.17665 0.90871 0.93172 0.86312 1.19603 0.98077 0.96301 1.34379 0.90268 1.25964 0.98371 0.97410 0.92581 1.69810 1.18120 1.31741 1.21323 0.86337 0.78819 0.81452 0.80005 1.18886 1.20235 1.18697 1.20931 0.99636 0.91348 1.07293 1.20371 0.92177 0.96923 0.99931 1.17638 0.92170 0.89154 1.21796 1.19296 0.93396 0.94765 0.91979 1.21476 0.99307 0.93631 0.98006 1.20987 0.97500 0.97234 0.97908 1.20825 1.01184 0.99519 0.92783 1.21353 1.00197 0.95828 0.91502 1.98334 1.68880 1.92635 1.44927 1.18413 0.97258 0.87850 0.89875 1.84796 1.57415 1.56543 1.29742 0.91630 0.93437 0.93314 0.88897 0.90612 0.86483 0.89521 0.85257 0.85553 0.85513 0.75865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.98 8.63 36.01 0.31 -1.67 16 2 C -0.02 -0.41 5.64 -104.69 -0.59 -1.00 16 3 C -0.23 -5.54 9.36 -39.28 -0.37 -5.91 16 4 C 0.12 3.16 5.57 -106.80 -0.59 2.57 16 5 C -0.45 -11.68 9.03 -37.88 -0.34 -12.02 16 6 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 7 C 0.08 1.83 5.15 -17.33 -0.09 1.74 16 8 N -0.79 -19.55 10.95 55.55 0.61 -18.94 16 9 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 10 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 11 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 12 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 13 C -0.17 -4.31 8.62 -39.28 -0.34 -4.65 16 14 C -0.08 -1.69 9.66 -39.65 -0.38 -2.07 16 15 C -0.21 -4.37 4.97 -104.64 -0.52 -4.90 16 16 C 0.01 0.12 4.13 -104.75 -0.43 -0.32 16 17 C -0.11 -1.68 9.74 -39.19 -0.38 -2.07 16 18 C -0.12 -1.56 10.03 -39.62 -0.40 -1.96 16 19 C -0.12 -1.64 9.82 -39.47 -0.39 -2.03 16 20 C -0.06 -0.92 6.33 -39.40 -0.25 -1.17 16 21 Cl -0.08 -1.03 28.50 -51.86 -1.48 -2.51 16 22 C 0.11 1.86 5.90 -38.73 -0.23 1.64 16 23 O -0.48 -7.76 10.90 -19.10 -0.21 -7.97 16 24 H 0.07 1.23 7.37 -51.93 -0.38 0.85 16 25 H 0.05 0.89 6.89 -51.93 -0.36 0.53 16 26 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 27 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 28 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 29 H 0.12 3.02 6.19 -52.49 -0.32 2.69 16 30 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 32 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.39 5.03 9.06 45.56 0.41 5.44 16 LS Contribution 307.89 15.07 4.64 4.64 Total: -1.00 -26.85 307.89 -9.19 -36.04 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -2.73 Total: 9.57 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: -4.99 Total: -33.81 kcal Atomic # 7 Polarization: -19.55 SS G_CDS: 0.61 Total: -18.94 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.21 Total: -7.97 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.48 Total: -2.51 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.85 -9.19 -36.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242367439.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.042 kcal (2) G-P(sol) polarization free energy of solvation -26.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds