Wall clock time and date at job start Tue Mar 31 2020 05:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36234 * 119.94137 * 2 1 4 4 C 1.40936 * 119.88243 * 179.97438 * 3 2 1 5 5 C 1.41002 * 120.11039 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99816 * 334.43356 * 5 4 3 7 7 C 1.39984 * 119.99813 * 154.43798 * 5 4 3 8 8 N 1.30807 * 119.99995 * 343.16574 * 7 5 4 9 9 Si 1.86797 * 119.99523 * 163.16702 * 7 5 4 10 10 H 1.48503 * 109.47272 * 60.00055 * 9 7 5 11 11 H 1.48507 * 109.46963 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47444 * 299.99883 * 9 7 5 13 13 C 1.40966 * 119.77706 * 359.97438 * 4 3 2 14 14 C 1.36196 * 119.88242 * 0.25405 * 13 4 3 15 15 C 1.39988 * 119.94537 * 180.02562 * 2 1 3 16 16 C 1.47855 * 119.88128 * 359.97438 * 15 2 1 17 17 C 1.39641 * 120.16827 * 244.99205 * 16 15 2 18 18 C 1.37867 * 119.92405 * 180.02562 * 17 16 15 19 19 C 1.38506 * 120.29039 * 359.97438 * 18 17 16 20 20 C 1.38281 * 120.35118 * 0.04551 * 19 18 17 21 21 Cl 1.73596 * 119.96754 * 180.02562 * 20 19 18 22 22 C 1.38676 * 120.06252 * 359.67477 * 20 19 18 23 23 O 1.35796 * 120.14195 * 180.30650 * 22 20 19 24 24 H 1.08999 * 109.46933 * 90.00400 * 1 2 3 25 25 H 1.09002 * 109.46689 * 210.00107 * 1 2 3 26 26 H 1.08993 * 109.47263 * 330.00218 * 1 2 3 27 27 H 1.07999 * 120.05837 * 0.02562 * 3 2 1 28 28 H 0.97003 * 119.99777 * 179.97438 * 8 7 5 29 29 H 1.07997 * 120.05692 * 179.97438 * 13 4 3 30 30 H 1.08001 * 119.94277 * 179.74541 * 14 13 4 31 31 H 1.07998 * 120.04121 * 0.02844 * 17 16 15 32 32 H 1.07999 * 119.85104 * 180.02562 * 18 17 16 33 33 H 1.07998 * 119.82349 * 180.02562 * 19 18 17 34 34 H 0.96707 * 114.00242 * 270.27060 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.1805 0.0000 4 6 3.5963 1.1791 0.0005 5 6 4.3049 2.3981 0.0000 6 1 3.8470 3.2887 -0.4044 7 6 5.6020 2.4539 0.5236 8 7 6.0363 1.4939 1.2987 9 14 6.7124 3.8994 0.1153 10 1 6.0806 5.1578 0.5871 11 1 8.0240 3.7218 0.7889 12 1 6.9155 3.9682 -1.3541 13 6 4.2951 -0.0452 0.0016 14 6 3.6059 -1.2199 -0.0031 15 6 2.2058 -1.2130 -0.0005 16 6 1.4626 -2.4912 -0.0005 17 6 1.5516 -3.3547 1.0933 18 6 0.8569 -4.5455 1.0878 19 6 0.0697 -4.8901 0.0015 20 6 -0.0264 -4.0440 -1.0881 21 17 -1.0165 -4.4855 -2.4440 22 6 0.6615 -2.8399 -1.0955 23 8 0.5632 -2.0050 -2.1619 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5138 27 1 1.6470 2.1158 0.0004 28 1 6.9352 1.5324 1.6612 29 1 5.3751 -0.0516 0.0016 30 1 4.1404 -2.1584 -0.0064 31 1 2.1637 -3.0899 1.9427 32 1 0.9262 -5.2122 1.9346 33 1 -0.4715 -5.8246 0.0053 34 1 1.2255 -2.1642 -2.8485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242367439.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:12 Heat of formation + Delta-G solvation = -32.142429 kcal Electronic energy + Delta-G solvation = -19710.629344 eV Core-core repulsion = 16597.859948 eV Total energy + Delta-G solvation = -3112.769396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.97726 -39.25553 -37.53709 -37.33612 -35.85830 -33.11958 -32.85908 -30.83840 -30.26653 -27.55190 -26.87842 -23.80624 -23.35841 -22.12555 -21.56675 -19.27840 -18.80708 -17.69983 -17.12163 -16.81026 -16.44491 -15.70030 -15.63267 -15.32121 -15.05215 -14.35558 -14.29165 -13.85067 -13.72376 -13.52895 -13.28429 -13.04988 -12.93774 -12.70822 -12.67552 -12.33565 -12.23510 -12.16809 -11.94738 -11.61234 -11.32177 -11.18444 -11.03028 -9.72827 -9.52551 -9.28618 -8.97625 -8.66641 -6.34431 0.17215 0.21321 0.94226 1.18544 1.20561 1.37965 1.48796 1.53498 2.19479 2.58243 2.73716 3.29705 3.69602 3.91103 4.14792 4.34271 4.36873 4.39180 4.44180 4.66429 4.73352 4.88246 4.93892 5.03519 5.11118 5.14403 5.22415 5.30286 5.39646 5.49787 5.58658 5.75582 5.77334 6.05563 6.13091 6.22898 6.38398 6.68032 6.82125 6.91471 7.03307 8.29381 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.031884 B = 0.003987 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.978053 B = 7020.757552 C = 7350.359187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.029 4.029 3 C -0.248 4.248 4 C 0.091 3.909 5 C -0.497 4.497 6 H 0.075 0.925 7 C 0.038 3.962 8 N -0.819 5.819 9 Si 0.982 3.018 10 H -0.260 1.260 11 H -0.266 1.266 12 H -0.261 1.261 13 C -0.194 4.194 14 C -0.080 4.080 15 C -0.186 4.186 16 C -0.028 4.028 17 C -0.111 4.111 18 C -0.106 4.106 19 C -0.109 4.109 20 C -0.070 4.070 21 Cl -0.064 7.064 22 C 0.108 3.892 23 O -0.489 6.489 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.092 0.908 28 H 0.290 0.710 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.127 0.873 32 H 0.164 0.836 33 H 0.159 0.841 34 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.192 -11.113 -2.150 13.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.029 4.029 3 C -0.267 4.267 4 C 0.089 3.911 5 C -0.525 4.525 6 H 0.093 0.907 7 C -0.178 4.178 8 N -0.444 5.444 9 Si 0.802 3.198 10 H -0.184 1.184 11 H -0.190 1.190 12 H -0.185 1.185 13 C -0.213 4.213 14 C -0.098 4.098 15 C -0.187 4.187 16 C -0.029 4.029 17 C -0.130 4.130 18 C -0.124 4.124 19 C -0.128 4.128 20 C -0.097 4.097 21 Cl -0.035 7.035 22 C 0.063 3.937 23 O -0.300 6.300 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.145 0.855 32 H 0.182 0.818 33 H 0.177 0.823 34 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -7.556 -10.984 -1.818 13.455 hybrid contribution 1.075 0.722 -0.478 1.381 sum -6.481 -10.262 -2.295 12.352 Atomic orbital electron populations 1.20609 0.91433 1.00994 1.01796 1.19388 0.95253 0.92086 0.96166 1.20690 0.93914 0.96403 1.15738 1.17973 0.91852 0.93764 0.87495 1.19813 0.99785 0.96359 1.36578 0.90714 1.26758 0.99103 1.00197 0.91760 1.69858 1.18804 1.33606 1.22135 0.85262 0.77004 0.77843 0.79685 1.18428 1.18988 1.18490 1.20882 0.99040 0.92234 1.09159 1.20595 0.93152 0.96736 0.99341 1.17934 0.91851 0.90740 1.18209 1.19165 0.95379 0.94242 0.94070 1.21554 0.99734 0.94345 0.97328 1.21330 0.95804 0.96326 0.98914 1.21265 0.99953 0.99967 0.91571 1.21442 1.00214 0.95482 0.92556 1.98342 1.68373 1.92384 1.44422 1.18412 0.97252 0.88580 0.89504 1.84751 1.58042 1.57056 1.30148 0.91186 0.92772 0.92422 0.89006 0.89953 0.88131 0.87818 0.85475 0.81839 0.82331 0.74562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.43 8.63 71.24 0.61 -2.82 16 2 C -0.03 -1.28 5.64 -19.91 -0.11 -1.40 16 3 C -0.25 -12.44 9.36 22.46 0.21 -12.23 16 4 C 0.09 4.97 5.57 -21.27 -0.12 4.85 16 5 C -0.50 -26.85 9.03 23.37 0.21 -26.64 16 6 H 0.07 3.91 7.90 -2.91 -0.02 3.89 16 7 C 0.04 1.88 5.15 85.27 0.44 2.32 16 8 N -0.82 -42.33 10.95 21.83 0.24 -42.09 16 9 Si 0.98 37.78 29.59 68.60 2.03 39.81 16 10 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 11 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 12 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 13 C -0.19 -10.13 8.62 22.46 0.19 -9.94 16 14 C -0.08 -3.66 9.66 22.23 0.21 -3.44 16 15 C -0.19 -7.90 4.97 -19.88 -0.10 -8.00 16 16 C -0.03 -0.96 4.13 -19.94 -0.08 -1.04 16 17 C -0.11 -3.27 9.74 22.52 0.22 -3.05 16 18 C -0.11 -2.34 10.03 22.25 0.22 -2.12 16 19 C -0.11 -2.39 9.82 22.34 0.22 -2.17 16 20 C -0.07 -1.85 6.33 22.38 0.14 -1.71 16 21 Cl -0.06 -1.54 28.50 -2.72 -0.08 -1.62 16 22 C 0.11 3.40 5.90 22.82 0.13 3.53 16 23 O -0.49 -15.36 10.90 -91.27 -0.99 -16.36 16 24 H 0.07 2.56 7.37 -2.39 -0.02 2.54 16 25 H 0.05 1.94 6.89 -2.39 -0.02 1.92 16 26 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 27 H 0.09 4.46 8.06 -2.91 -0.02 4.43 16 28 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 29 H 0.10 5.49 6.19 -2.91 -0.02 5.47 16 30 H 0.10 4.27 8.06 -2.91 -0.02 4.25 16 31 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 32 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 34 H 0.40 10.05 9.06 -74.05 -0.67 9.38 16 Total: -1.00 -59.98 307.89 4.07 -55.91 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 0.47 Total: 28.19 kcal Atomic # 6 Polarization: -66.25 SS G_CDS: 2.41 Total: -63.85 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.24 Total: -42.09 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.99 Total: -16.36 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -59.98 4.07 -55.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242367439.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.763 kcal (2) G-P(sol) polarization free energy of solvation -59.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds