Wall clock time and date at job start Tue Mar 31 2020 05:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36231 * 120.06293 * 2 1 4 4 C 1.39984 * 120.12285 * 179.97438 * 3 2 1 5 5 C 1.47853 * 119.88941 * 180.02562 * 4 3 2 6 6 C 1.39633 * 120.17358 * 309.72546 * 5 4 3 7 7 C 1.37867 * 119.93007 * 179.76847 * 6 5 4 8 8 C 1.38510 * 120.28409 * 0.52862 * 7 6 5 9 9 C 1.38283 * 120.35187 * 359.69898 * 8 7 6 10 10 Cl 1.73598 * 119.96452 * 180.02562 * 9 8 7 11 11 C 1.38666 * 120.06047 * 0.04556 * 9 8 7 12 12 O 1.35811 * 120.14114 * 179.97438 * 11 9 8 13 13 C 1.40023 * 120.22470 * 359.97438 * 4 3 2 14 14 C 1.36200 * 120.11370 * 359.78076 * 13 4 3 15 15 C 1.40935 * 120.05856 * 180.02562 * 2 1 3 16 16 C 1.40993 * 120.11038 * 359.96163 * 15 2 1 17 17 H 1.07992 * 120.00384 * 334.47874 * 16 15 2 18 18 C 1.39990 * 119.99878 * 154.48046 * 16 15 2 19 19 N 1.30816 * 120.00087 * 334.59812 * 18 16 15 20 20 Si 1.86800 * 119.99908 * 154.59376 * 18 16 15 21 21 H 1.48502 * 109.47000 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47174 * 300.00122 * 20 18 16 23 23 H 1.48503 * 109.47012 * 60.00240 * 20 18 16 24 24 H 1.09000 * 109.47258 * 269.98132 * 1 2 3 25 25 H 1.09004 * 109.46654 * 29.98642 * 1 2 3 26 26 H 1.08996 * 109.46753 * 149.98093 * 1 2 3 27 27 H 1.08004 * 119.93350 * 0.02562 * 3 2 1 28 28 H 1.07998 * 120.04057 * 0.02562 * 6 5 4 29 29 H 1.08002 * 119.85716 * 180.23249 * 7 6 5 30 30 H 1.07996 * 119.82395 * 179.72729 * 8 7 6 31 31 H 0.96694 * 114.00196 * 269.98527 * 12 11 9 32 32 H 1.07997 * 119.94285 * 180.02562 * 13 4 3 33 33 H 1.07999 * 120.05736 * 180.22970 * 14 13 4 34 34 H 0.97003 * 119.99620 * 354.16299 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1790 0.0000 4 6 3.5893 1.1805 0.0005 5 6 4.3247 2.4631 0.0011 6 6 4.0049 3.4560 -0.9272 7 6 4.6907 4.6519 -0.9191 8 6 5.7042 4.8697 -0.0004 9 6 6.0338 3.8928 0.9211 10 17 7.3053 4.1768 2.0684 11 6 5.3499 2.6866 0.9293 12 8 5.6726 1.7258 1.8333 13 6 4.2954 -0.0286 0.0016 14 6 3.6226 -1.2128 0.0067 15 6 2.2129 -1.2198 -0.0005 16 6 1.5116 -2.4429 -0.0003 17 1 0.5110 -2.4916 0.4032 18 6 2.1122 -3.5943 -0.5231 19 7 3.0523 -3.4889 -1.4266 20 14 1.5714 -5.2812 0.0697 21 1 2.3562 -6.3279 -0.6330 22 1 1.8017 -5.3891 1.5328 23 1 0.1266 -5.4676 -0.2190 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5137 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6494 2.1144 0.0004 28 1 3.2184 3.2888 -1.6482 29 1 4.4398 5.4205 -1.6352 30 1 6.2395 5.8077 -0.0036 31 1 6.3531 1.1107 1.5275 32 1 5.3754 -0.0222 0.0025 33 1 4.1682 -2.1449 0.0112 34 1 3.2744 -2.6200 -1.7962 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242368119.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:38 Heat of formation + Delta-G solvation = -26.399949 kcal Electronic energy + Delta-G solvation = -19580.208845 eV Core-core repulsion = 16467.688462 eV Total energy + Delta-G solvation = -3112.520383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.67219 -37.90036 -36.41063 -36.25250 -34.19097 -32.17973 -30.79814 -29.54638 -28.48972 -26.24527 -24.99277 -22.50834 -22.25978 -20.59347 -19.87686 -18.13861 -17.76243 -16.38707 -15.66461 -15.17076 -14.78449 -14.51030 -14.13760 -13.97435 -13.76672 -12.87769 -12.76993 -12.51699 -12.24140 -12.00078 -11.96565 -11.77983 -11.47408 -11.29535 -11.11762 -10.92094 -10.82706 -10.67492 -10.48069 -10.16227 -9.71502 -9.51705 -9.11864 -8.61687 -8.41326 -7.72345 -7.45914 -7.23343 -4.54401 1.30575 1.33353 2.25419 2.64485 2.82414 3.08182 3.17054 3.28474 3.78041 3.90451 4.41595 4.42763 5.01766 5.21040 5.34312 5.43978 5.51446 5.84701 5.96829 5.99705 6.12379 6.24774 6.28586 6.45274 6.53609 6.55418 6.64613 6.81568 6.91380 6.95301 7.04363 7.29788 7.57417 7.65468 7.73891 7.80642 7.93155 8.04527 8.18254 8.61590 8.73657 9.87711 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.026059 B = 0.004120 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.215834 B = 6794.701344 C = 7391.899436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.204 4.204 3 C -0.049 4.049 4 C -0.209 4.209 5 C 0.005 3.995 6 C -0.112 4.112 7 C -0.114 4.114 8 C -0.129 4.129 9 C -0.057 4.057 10 Cl -0.075 7.075 11 C 0.103 3.897 12 O -0.476 6.476 13 C -0.050 4.050 14 C -0.222 4.222 15 C 0.106 3.894 16 C -0.502 4.502 17 H 0.082 0.918 18 C 0.038 3.962 19 N -0.784 5.784 20 Si 1.064 2.936 21 H -0.273 1.273 22 H -0.273 1.273 23 H -0.274 1.274 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.384 0.616 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.567 9.186 0.587 9.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.205 4.205 3 C -0.068 4.068 4 C -0.210 4.210 5 C 0.004 3.996 6 C -0.131 4.131 7 C -0.132 4.132 8 C -0.148 4.148 9 C -0.084 4.084 10 Cl -0.046 7.046 11 C 0.057 3.943 12 O -0.286 6.286 13 C -0.069 4.069 14 C -0.241 4.241 15 C 0.103 3.897 16 C -0.528 4.528 17 H 0.100 0.900 18 C -0.186 4.186 19 N -0.406 5.406 20 Si 0.887 3.113 21 H -0.197 1.197 22 H -0.198 1.198 23 H -0.199 1.199 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.240 0.760 32 H 0.102 0.898 33 H 0.124 0.876 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.617 7.852 0.845 8.687 hybrid contribution 0.296 1.567 0.002 1.595 sum 3.913 9.420 0.848 10.235 Atomic orbital electron populations 1.20397 0.93285 1.00599 0.99835 1.19364 0.94539 0.92797 1.13764 1.20177 0.92350 0.96110 0.98140 1.17699 0.92360 0.89685 1.21290 1.19311 0.93911 0.94806 0.91549 1.21362 1.00320 0.92897 0.98495 1.20972 0.96025 0.97478 0.98723 1.20808 0.99563 0.98560 0.95847 1.21331 0.94400 0.96987 0.95647 1.98336 1.50356 1.96112 1.59816 1.18390 0.96274 0.88364 0.91273 1.84827 1.61454 1.42592 1.39681 1.20179 0.96610 0.92149 0.97940 1.20794 0.94405 0.96512 1.12361 1.17599 0.91599 0.92261 0.88223 1.20665 1.03281 0.93793 1.35099 0.90034 1.27125 0.92750 1.05672 0.93040 1.70454 1.22086 1.31814 1.16280 0.83648 0.77006 0.73330 0.77340 1.19727 1.19813 1.19949 0.93915 0.94254 0.92056 0.89157 0.85353 0.85510 0.85446 0.76046 0.89787 0.87596 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 9.39 36.01 0.34 -1.36 16 2 C -0.20 -4.71 5.90 -104.32 -0.62 -5.33 16 3 C -0.05 -1.07 9.08 -39.65 -0.36 -1.43 16 4 C -0.21 -4.44 5.30 -104.64 -0.55 -4.99 16 5 C 0.01 0.09 5.48 -104.75 -0.57 -0.48 16 6 C -0.11 -1.77 9.51 -39.20 -0.37 -2.14 16 7 C -0.11 -1.50 10.03 -39.62 -0.40 -1.89 16 8 C -0.13 -1.73 9.82 -39.46 -0.39 -2.12 16 9 C -0.06 -0.87 6.33 -39.41 -0.25 -1.12 16 10 Cl -0.07 -1.04 28.50 -51.86 -1.48 -2.52 16 11 C 0.10 1.79 6.61 -38.73 -0.26 1.53 16 12 O -0.48 -8.27 11.57 -19.15 -0.22 -8.49 16 13 C -0.05 -1.10 8.70 -39.65 -0.35 -1.45 16 14 C -0.22 -5.38 7.89 -39.28 -0.31 -5.69 16 15 C 0.11 2.66 5.29 -106.80 -0.57 2.10 16 16 C -0.50 -12.49 8.04 -37.88 -0.30 -12.79 16 17 H 0.08 1.97 6.91 -52.49 -0.36 1.61 16 18 C 0.04 0.90 4.93 -17.33 -0.09 0.81 16 19 N -0.78 -19.73 12.32 55.55 0.68 -19.04 16 20 Si 1.06 20.42 30.00 -169.99 -5.10 15.32 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 23 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 26 H 0.06 1.25 6.76 -51.93 -0.35 0.90 16 27 H 0.09 1.78 8.04 -52.48 -0.42 1.35 16 28 H 0.13 1.90 8.04 -52.49 -0.42 1.48 16 29 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.38 5.31 8.23 45.56 0.37 5.69 16 32 H 0.08 1.63 7.08 -52.49 -0.37 1.26 16 33 H 0.11 2.65 6.50 -52.49 -0.34 2.31 16 34 H 0.30 7.79 6.70 -40.82 -0.27 7.52 16 LS Contribution 306.59 15.07 4.62 4.62 Total: -1.00 -26.79 306.59 -9.19 -35.97 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -2.65 Total: 10.49 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: -5.04 Total: -36.35 kcal Atomic # 7 Polarization: -19.73 SS G_CDS: 0.68 Total: -19.04 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.22 Total: -8.49 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.10 Total: 15.32 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.48 Total: -2.52 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -26.79 -9.19 -35.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242368119.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.572 kcal (2) G-P(sol) polarization free energy of solvation -26.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds