Wall clock time and date at job start Tue Mar 31 2020 05:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36231 * 120.06293 * 2 1 4 4 C 1.39984 * 120.12285 * 179.97438 * 3 2 1 5 5 C 1.47853 * 119.88941 * 180.02562 * 4 3 2 6 6 C 1.39633 * 120.17358 * 309.72546 * 5 4 3 7 7 C 1.37867 * 119.93007 * 179.76847 * 6 5 4 8 8 C 1.38510 * 120.28409 * 0.52862 * 7 6 5 9 9 C 1.38283 * 120.35187 * 359.69898 * 8 7 6 10 10 Cl 1.73598 * 119.96452 * 180.02562 * 9 8 7 11 11 C 1.38666 * 120.06047 * 0.04556 * 9 8 7 12 12 O 1.35811 * 120.14114 * 179.97438 * 11 9 8 13 13 C 1.40023 * 120.22470 * 359.97438 * 4 3 2 14 14 C 1.36200 * 120.11370 * 359.78076 * 13 4 3 15 15 C 1.40935 * 120.05856 * 180.02562 * 2 1 3 16 16 C 1.40993 * 120.11038 * 359.96163 * 15 2 1 17 17 H 1.07992 * 120.00384 * 334.47874 * 16 15 2 18 18 C 1.39990 * 119.99878 * 154.48046 * 16 15 2 19 19 N 1.30816 * 120.00087 * 334.59812 * 18 16 15 20 20 Si 1.86800 * 119.99908 * 154.59376 * 18 16 15 21 21 H 1.48502 * 109.47000 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47174 * 300.00122 * 20 18 16 23 23 H 1.48503 * 109.47012 * 60.00240 * 20 18 16 24 24 H 1.09000 * 109.47258 * 269.98132 * 1 2 3 25 25 H 1.09004 * 109.46654 * 29.98642 * 1 2 3 26 26 H 1.08996 * 109.46753 * 149.98093 * 1 2 3 27 27 H 1.08004 * 119.93350 * 0.02562 * 3 2 1 28 28 H 1.07998 * 120.04057 * 0.02562 * 6 5 4 29 29 H 1.08002 * 119.85716 * 180.23249 * 7 6 5 30 30 H 1.07996 * 119.82395 * 179.72729 * 8 7 6 31 31 H 0.96694 * 114.00196 * 269.98527 * 12 11 9 32 32 H 1.07997 * 119.94285 * 180.02562 * 13 4 3 33 33 H 1.07999 * 120.05736 * 180.22970 * 14 13 4 34 34 H 0.97003 * 119.99620 * 354.16299 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1790 0.0000 4 6 3.5893 1.1805 0.0005 5 6 4.3247 2.4631 0.0011 6 6 4.0049 3.4560 -0.9272 7 6 4.6907 4.6519 -0.9191 8 6 5.7042 4.8697 -0.0004 9 6 6.0338 3.8928 0.9211 10 17 7.3053 4.1768 2.0684 11 6 5.3499 2.6866 0.9293 12 8 5.6726 1.7258 1.8333 13 6 4.2954 -0.0286 0.0016 14 6 3.6226 -1.2128 0.0067 15 6 2.2129 -1.2198 -0.0005 16 6 1.5116 -2.4429 -0.0003 17 1 0.5110 -2.4916 0.4032 18 6 2.1122 -3.5943 -0.5231 19 7 3.0523 -3.4889 -1.4266 20 14 1.5714 -5.2812 0.0697 21 1 2.3562 -6.3279 -0.6330 22 1 1.8017 -5.3891 1.5328 23 1 0.1266 -5.4676 -0.2190 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5137 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6494 2.1144 0.0004 28 1 3.2184 3.2888 -1.6482 29 1 4.4398 5.4205 -1.6352 30 1 6.2395 5.8077 -0.0036 31 1 6.3531 1.1107 1.5275 32 1 5.3754 -0.0222 0.0025 33 1 4.1682 -2.1449 0.0112 34 1 3.2744 -2.6200 -1.7962 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242368119.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:38 Heat of formation + Delta-G solvation = -39.447681 kcal Electronic energy + Delta-G solvation = -19580.774637 eV Core-core repulsion = 16467.688462 eV Total energy + Delta-G solvation = -3113.086175 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.00776 -39.55768 -37.65250 -37.42527 -35.90540 -33.80177 -32.36442 -30.78660 -30.05155 -27.93250 -26.64555 -23.98423 -23.50318 -22.25744 -21.47533 -19.75396 -19.20434 -17.68111 -16.96010 -16.50200 -16.45205 -16.15577 -15.62122 -15.32723 -15.16774 -14.48889 -14.15082 -14.11102 -13.83799 -13.58720 -13.28761 -13.15241 -12.94947 -12.84692 -12.51105 -12.37910 -12.20535 -12.03246 -11.97494 -11.57129 -11.44082 -11.15198 -10.86856 -10.01296 -9.59950 -9.50588 -9.22292 -8.96808 -6.40159 0.04056 0.13672 0.94859 1.01175 1.13600 1.51014 1.64063 1.79304 2.31664 2.51183 2.72607 3.19938 3.52211 3.82839 4.07854 4.28511 4.29012 4.30997 4.36106 4.59881 4.65950 4.76679 4.88324 4.94875 5.06342 5.13351 5.21174 5.24470 5.34205 5.46043 5.47493 5.71447 5.77905 5.85744 5.98667 6.04973 6.25024 6.39286 6.70488 6.80658 6.94363 8.01215 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.026059 B = 0.004120 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.215834 B = 6794.701344 C = 7391.899436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.218 4.218 3 C -0.063 4.063 4 C -0.191 4.191 5 C -0.032 4.032 6 C -0.111 4.111 7 C -0.102 4.102 8 C -0.112 4.112 9 C -0.067 4.067 10 Cl -0.064 7.064 11 C 0.092 3.908 12 O -0.494 6.494 13 C -0.060 4.060 14 C -0.240 4.240 15 C 0.076 3.924 16 C -0.537 4.537 17 H 0.079 0.921 18 C 0.005 3.995 19 N -0.811 5.811 20 Si 1.113 2.887 21 H -0.272 1.272 22 H -0.266 1.266 23 H -0.255 1.255 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.114 0.886 28 H 0.135 0.865 29 H 0.168 0.832 30 H 0.161 0.839 31 H 0.395 0.605 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.834 11.989 0.551 12.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.219 4.219 3 C -0.081 4.081 4 C -0.192 4.192 5 C -0.033 4.033 6 C -0.130 4.130 7 C -0.119 4.119 8 C -0.130 4.130 9 C -0.095 4.095 10 Cl -0.035 7.035 11 C 0.047 3.953 12 O -0.305 6.305 13 C -0.078 4.078 14 C -0.259 4.259 15 C 0.073 3.927 16 C -0.565 4.565 17 H 0.097 0.903 18 C -0.213 4.213 19 N -0.434 5.434 20 Si 0.930 3.070 21 H -0.197 1.197 22 H -0.191 1.191 23 H -0.179 1.179 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.132 0.868 28 H 0.153 0.847 29 H 0.186 0.814 30 H 0.178 0.822 31 H 0.252 0.748 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.886 10.678 0.809 11.392 hybrid contribution 0.376 1.083 0.041 1.147 sum 4.262 11.761 0.850 12.538 Atomic orbital electron populations 1.20376 0.91384 1.01279 1.00552 1.19811 0.96299 0.92715 1.13085 1.20495 0.92900 0.96577 0.98110 1.18082 0.92612 0.90917 1.17585 1.19269 0.95463 0.94500 0.94079 1.21531 1.00561 0.93138 0.97735 1.21381 0.94649 0.97124 0.98790 1.21287 0.98727 0.98921 0.94114 1.21444 0.94784 0.96716 0.96507 1.98342 1.49718 1.95949 1.59533 1.18504 0.96397 0.89148 0.91297 1.84783 1.62155 1.43209 1.40325 1.20413 0.97718 0.91914 0.97757 1.20776 0.94597 0.96685 1.13872 1.17943 0.92152 0.93367 0.89209 1.20771 1.03687 0.94731 1.37292 0.90271 1.28400 0.91991 1.08811 0.92053 1.70562 1.24184 1.30564 1.18085 0.83055 0.77597 0.69292 0.77063 1.19710 1.19113 1.17943 0.93059 0.91743 0.93124 0.86823 0.84697 0.81421 0.82193 0.74764 0.87922 0.89502 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.17 9.39 71.24 0.67 -2.50 16 2 C -0.22 -10.24 5.90 -19.67 -0.12 -10.36 16 3 C -0.06 -2.70 9.08 22.23 0.20 -2.49 16 4 C -0.19 -8.05 5.30 -19.88 -0.11 -8.15 16 5 C -0.03 -1.13 5.48 -19.95 -0.11 -1.24 16 6 C -0.11 -3.15 9.51 22.52 0.21 -2.93 16 7 C -0.10 -2.18 10.03 22.25 0.22 -1.95 16 8 C -0.11 -2.48 9.82 22.35 0.22 -2.26 16 9 C -0.07 -1.86 6.33 22.38 0.14 -1.72 16 10 Cl -0.06 -1.62 28.50 -2.72 -0.08 -1.70 16 11 C 0.09 3.05 6.61 22.82 0.15 3.20 16 12 O -0.49 -16.83 11.57 -91.43 -1.06 -17.89 16 13 C -0.06 -2.69 8.70 22.23 0.19 -2.49 16 14 C -0.24 -12.27 7.89 22.47 0.18 -12.09 16 15 C 0.08 3.98 5.29 -21.27 -0.11 3.86 16 16 C -0.54 -28.03 8.04 23.37 0.19 -27.84 16 17 H 0.08 4.00 6.91 -2.91 -0.02 3.98 16 18 C 0.00 0.23 4.93 85.27 0.42 0.65 16 19 N -0.81 -43.05 12.32 21.84 0.27 -42.78 16 20 Si 1.11 42.27 30.00 68.60 2.06 44.33 16 21 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 22 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 23 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 24 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 26 H 0.05 2.10 6.76 -2.39 -0.02 2.08 16 27 H 0.11 4.26 8.04 -2.91 -0.02 4.24 16 28 H 0.14 3.59 8.04 -2.91 -0.02 3.57 16 29 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 30 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 31 H 0.39 10.87 8.23 -74.06 -0.61 10.26 16 32 H 0.10 4.08 7.08 -2.91 -0.02 4.06 16 33 H 0.09 4.67 6.50 -2.91 -0.02 4.65 16 34 H 0.28 15.74 6.70 -92.71 -0.62 15.12 16 Total: -1.00 -60.41 306.59 4.23 -56.18 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 0.68 Total: 30.18 kcal Atomic # 6 Polarization: -70.68 SS G_CDS: 2.35 Total: -68.33 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.27 Total: -42.78 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -1.06 Total: -17.89 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.06 Total: 44.33 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.70 kcal Total: -60.41 4.23 -56.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242368119.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.733 kcal (2) G-P(sol) polarization free energy of solvation -60.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds