Wall clock time and date at job start Tue Mar 31 2020 05:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36258 * 120.06583 * 2 1 4 4 C 1.39928 * 120.12829 * 179.97438 * 3 2 1 5 5 C 1.47961 * 119.88497 * 180.02562 * 4 3 2 6 6 C 1.39658 * 120.12762 * 310.00420 * 5 4 3 7 7 C 1.37919 * 119.97295 * 179.97438 * 6 5 4 8 8 C 1.38364 * 120.22841 * 359.97438 * 7 6 5 9 9 C 1.38781 * 120.25162 * 0.02562 * 8 7 6 10 10 O 1.35933 * 119.98680 * 179.97438 * 9 8 7 11 11 C 1.38590 * 120.02885 * 359.74378 * 9 8 7 12 12 Cl 1.73596 * 120.11888 * 180.25569 * 11 9 8 13 13 C 1.39968 * 120.23004 * 0.02562 * 4 3 2 14 14 C 1.36224 * 120.12261 * 359.78276 * 13 4 3 15 15 C 1.40922 * 120.06112 * 180.02562 * 2 1 3 16 16 C 1.41020 * 120.11476 * 359.94956 * 15 2 1 17 17 H 1.08003 * 119.99888 * 26.82134 * 16 15 2 18 18 C 1.40006 * 120.00135 * 206.82202 * 16 15 2 19 19 N 1.30800 * 119.99888 * 16.41937 * 18 16 15 20 20 Si 1.86797 * 120.00033 * 196.42646 * 18 16 15 21 21 H 1.48508 * 109.46902 * 265.18617 * 20 18 16 22 22 H 1.48496 * 109.47422 * 25.18074 * 20 18 16 23 23 H 1.48500 * 109.47234 * 145.18644 * 20 18 16 24 24 H 1.09006 * 109.46673 * 269.97546 * 1 2 3 25 25 H 1.08997 * 109.46792 * 29.97111 * 1 2 3 26 26 H 1.08996 * 109.47212 * 149.97791 * 1 2 3 27 27 H 1.08011 * 119.93696 * 0.03117 * 3 2 1 28 28 H 1.07999 * 120.01332 * 359.95445 * 6 5 4 29 29 H 1.08007 * 119.88648 * 179.97438 * 7 6 5 30 30 H 1.08004 * 119.87216 * 180.02562 * 8 7 6 31 31 H 0.96706 * 113.99995 * 90.00067 * 10 9 8 32 32 H 1.08002 * 119.93682 * 179.97438 * 13 4 3 33 33 H 1.08002 * 120.06219 * 180.25870 * 14 13 4 34 34 H 0.97001 * 119.99819 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1897 1.1792 0.0000 4 6 3.5889 1.1808 0.0005 5 6 4.3248 2.4644 0.0011 6 6 4.0001 3.4590 -0.9241 7 6 4.6877 4.6545 -0.9203 8 6 5.6992 4.8734 -0.0020 9 6 6.0296 3.8917 0.9215 10 8 7.0247 4.1123 1.8210 11 6 5.3424 2.6882 0.9303 12 17 5.7493 1.4611 2.0888 13 6 4.2950 -0.0278 0.0005 14 6 3.6224 -1.2124 0.0045 15 6 2.2129 -1.2197 -0.0005 16 6 1.5116 -2.4431 0.0000 17 1 0.5185 -2.4964 -0.4213 18 6 2.1025 -3.5886 0.5466 19 7 3.1423 -3.4765 1.3323 20 14 1.4063 -5.2768 0.1538 21 1 0.4586 -5.6824 1.2228 22 1 0.6926 -5.2275 -1.1475 23 1 2.5139 -6.2628 0.0739 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6496 2.1147 0.0005 28 1 3.2111 3.2918 -1.6423 29 1 4.4357 5.4225 -1.6367 30 1 6.2337 5.8120 -0.0040 31 1 6.7250 4.5123 2.6489 32 1 5.3750 -0.0211 0.0005 33 1 4.1682 -2.1444 0.0087 34 1 3.5519 -4.2702 1.7107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242801322.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:33 Heat of formation + Delta-G solvation = -32.855333 kcal Electronic energy + Delta-G solvation = -19573.521964 eV Core-core repulsion = 16460.721654 eV Total energy + Delta-G solvation = -3112.800310 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.79731 -39.54593 -37.65549 -37.23796 -35.59955 -33.72509 -32.25688 -30.84007 -30.17752 -27.90596 -26.61290 -23.91144 -23.50664 -22.23273 -21.14926 -19.26292 -18.97842 -17.56834 -17.23589 -16.79997 -16.43474 -15.86890 -15.57817 -15.29449 -14.99052 -14.42603 -14.30609 -13.90795 -13.64313 -13.45549 -13.22821 -12.97648 -12.81077 -12.75579 -12.59796 -12.35835 -12.29345 -12.08706 -11.90158 -11.58532 -11.32322 -11.08723 -11.01681 -9.85765 -9.53696 -9.22466 -8.93349 -8.63175 -6.28647 0.10169 0.20520 1.02475 1.21460 1.34867 1.38053 1.49483 1.54333 2.19033 2.58226 2.78449 3.21653 3.71047 3.91936 4.16106 4.26260 4.43742 4.45589 4.50472 4.70605 4.73602 4.88022 5.01523 5.04555 5.16033 5.25640 5.28884 5.35808 5.37977 5.48493 5.56507 5.80280 5.81423 6.05111 6.14766 6.22150 6.38897 6.70032 6.75968 6.93275 7.05480 8.30835 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.025546 B = 0.004697 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.807058 B = 5959.841191 C = 6742.208860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.215 4.215 3 C -0.065 4.065 4 C -0.194 4.194 5 C 0.004 3.996 6 C -0.129 4.129 7 C -0.084 4.084 8 C -0.149 4.149 9 C 0.111 3.889 10 O -0.498 6.498 11 C -0.094 4.094 12 Cl -0.075 7.075 13 C -0.072 4.072 14 C -0.193 4.193 15 C 0.093 3.907 16 C -0.482 4.482 17 H 0.087 0.913 18 C 0.034 3.966 19 N -0.822 5.822 20 Si 0.979 3.021 21 H -0.262 1.262 22 H -0.255 1.255 23 H -0.271 1.271 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.117 0.883 28 H 0.139 0.861 29 H 0.168 0.832 30 H 0.163 0.837 31 H 0.407 0.593 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.640 12.907 -1.690 13.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.216 4.216 3 C -0.083 4.083 4 C -0.196 4.196 5 C 0.004 3.996 6 C -0.147 4.147 7 C -0.102 4.102 8 C -0.167 4.167 9 C 0.065 3.935 10 O -0.310 6.310 11 C -0.121 4.121 12 Cl -0.046 7.046 13 C -0.090 4.090 14 C -0.212 4.212 15 C 0.091 3.909 16 C -0.511 4.511 17 H 0.105 0.895 18 C -0.182 4.182 19 N -0.448 5.448 20 Si 0.800 3.200 21 H -0.187 1.187 22 H -0.178 1.178 23 H -0.195 1.195 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.135 0.865 28 H 0.157 0.843 29 H 0.186 0.814 30 H 0.181 0.819 31 H 0.266 0.734 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.193 12.418 -1.847 12.744 hybrid contribution -0.088 -1.228 0.795 1.465 sum 2.105 11.190 -1.051 11.435 Atomic orbital electron populations 1.20374 0.91239 1.01299 1.00497 1.19848 0.96315 0.92730 1.12702 1.20418 0.92434 0.96707 0.98745 1.18165 0.92897 0.90664 1.17842 1.18852 0.93098 0.94243 0.93452 1.21504 1.01634 0.93196 0.98383 1.21407 0.93938 0.96820 0.98044 1.21624 0.99147 0.99447 0.96477 1.18279 0.89451 0.91486 0.94262 1.84789 1.31733 1.84607 1.29907 1.21885 1.00971 0.92420 0.96860 1.98352 1.93032 1.54733 1.58489 1.20497 0.97303 0.92497 0.98751 1.20860 0.94947 0.96360 1.09039 1.17897 0.92075 0.93107 0.87863 1.19897 1.02997 0.93594 1.34612 0.89469 1.26817 0.94258 1.05083 0.92026 1.69901 1.19653 1.33252 1.21968 0.85233 0.78806 0.75935 0.80046 1.18707 1.17807 1.19519 0.93439 0.91582 0.92787 0.86502 0.84288 0.81436 0.81922 0.73429 0.89411 0.88779 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.04 9.61 71.24 0.68 -2.35 16 2 C -0.21 -10.10 5.90 -19.67 -0.12 -10.22 16 3 C -0.06 -2.80 9.07 22.22 0.20 -2.60 16 4 C -0.19 -8.53 5.13 -19.87 -0.10 -8.63 16 5 C 0.00 0.16 5.47 -20.03 -0.11 0.05 16 6 C -0.13 -3.69 9.50 22.54 0.21 -3.47 16 7 C -0.08 -1.80 10.03 22.22 0.22 -1.58 16 8 C -0.15 -3.27 9.98 22.43 0.22 -3.04 16 9 C 0.11 3.12 6.69 22.48 0.15 3.27 16 10 O -0.50 -12.34 12.96 -92.80 -1.20 -13.55 16 11 C -0.09 -3.32 6.30 22.68 0.14 -3.17 16 12 Cl -0.07 -2.89 25.54 -2.72 -0.07 -2.96 16 13 C -0.07 -3.52 8.10 22.22 0.18 -3.34 16 14 C -0.19 -10.40 8.61 22.47 0.19 -10.21 16 15 C 0.09 4.96 5.56 -21.28 -0.12 4.84 16 16 C -0.48 -25.28 8.43 23.38 0.20 -25.08 16 17 H 0.09 4.32 6.27 -2.91 -0.02 4.30 16 18 C 0.03 1.68 5.15 85.28 0.44 2.12 16 19 N -0.82 -43.62 10.99 21.84 0.24 -43.38 16 20 Si 0.98 37.88 29.59 68.60 2.03 39.91 16 21 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 23 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 24 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 25 H 0.07 2.15 8.08 -2.39 -0.02 2.13 16 26 H 0.05 2.13 6.25 -2.39 -0.01 2.11 16 27 H 0.12 4.30 8.03 -2.90 -0.02 4.27 16 28 H 0.14 3.66 8.04 -2.91 -0.02 3.63 16 29 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 30 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.41 6.31 9.06 -74.05 -0.67 5.64 16 32 H 0.09 4.19 7.17 -2.91 -0.02 4.17 16 33 H 0.09 5.38 6.25 -2.91 -0.02 5.37 16 34 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 Total: -1.00 -63.42 305.62 3.88 -59.54 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.48 Total: 23.85 kcal Atomic # 6 Polarization: -65.82 SS G_CDS: 2.40 Total: -63.42 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.24 Total: -43.38 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -1.20 Total: -13.55 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Atomic # 17 Polarization: -2.89 SS G_CDS: -0.07 Total: -2.96 kcal Total: -63.42 3.88 -59.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242801322.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.684 kcal (2) G-P(sol) polarization free energy of solvation -63.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds