Wall clock time and date at job start Tue Mar 31 2020 05:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36268 * 119.93743 * 2 1 4 4 C 1.40908 * 119.87657 * 180.02562 * 3 2 1 5 5 C 1.41027 * 120.11567 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99678 * 334.45669 * 5 4 3 7 7 C 1.40009 * 120.00206 * 154.46212 * 5 4 3 8 8 N 1.30791 * 119.99970 * 343.13993 * 7 5 4 9 9 Si 1.86797 * 119.99665 * 163.13957 * 7 5 4 10 10 H 1.48498 * 109.47396 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46982 * 120.00287 * 9 7 5 12 12 H 1.48501 * 109.47192 * 239.99590 * 9 7 5 13 13 C 1.40947 * 119.76993 * 359.97438 * 4 3 2 14 14 C 1.36225 * 119.87681 * 0.25968 * 13 4 3 15 15 C 1.39927 * 119.94045 * 180.02562 * 2 1 3 16 16 C 1.47963 * 119.88381 * 0.02562 * 15 2 1 17 17 C 1.39664 * 120.12630 * 244.72327 * 16 15 2 18 18 C 1.37918 * 119.97421 * 179.69796 * 17 16 15 19 19 C 1.38371 * 120.22276 * 0.57627 * 18 17 16 20 20 C 1.38791 * 120.25524 * 359.72296 * 19 18 17 21 21 O 1.35928 * 119.98752 * 179.97438 * 20 19 18 22 22 C 1.38588 * 120.02141 * 359.97438 * 20 19 18 23 23 Cl 1.73597 * 120.10973 * 180.02562 * 22 20 19 24 24 H 1.09001 * 109.46906 * 90.00452 * 1 2 3 25 25 H 1.09001 * 109.46699 * 210.00010 * 1 2 3 26 26 H 1.08995 * 109.47333 * 329.99994 * 1 2 3 27 27 H 1.08002 * 120.05686 * 0.02562 * 3 2 1 28 28 H 0.97001 * 120.00040 * 180.02562 * 8 7 5 29 29 H 1.08004 * 120.05929 * 179.97438 * 13 4 3 30 30 H 1.08003 * 119.93895 * 179.71859 * 14 13 4 31 31 H 1.07996 * 120.01019 * 359.97438 * 17 16 15 32 32 H 1.07994 * 119.89031 * 180.27726 * 18 17 16 33 33 H 1.07999 * 119.86466 * 179.69565 * 19 18 17 34 34 H 0.96700 * 113.99703 * 269.97855 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1871 1.1809 0.0000 4 6 3.5962 1.1794 -0.0005 5 6 4.3051 2.3985 -0.0011 6 1 3.8468 3.2894 -0.4044 7 6 5.6030 2.4539 0.5211 8 7 6.0379 1.4937 1.2954 9 14 6.7133 3.8992 0.1119 10 1 5.9897 4.8433 -0.7771 11 1 7.1006 4.5962 1.3647 12 1 7.9329 3.4068 -0.5777 13 6 4.2947 -0.0448 -0.0005 14 6 3.6051 -1.2196 -0.0054 15 6 2.2054 -1.2125 -0.0005 16 6 1.4617 -2.4917 -0.0017 17 6 1.5548 -3.3576 1.0901 18 6 0.8553 -4.5463 1.0884 19 6 0.0696 -4.8905 0.0027 20 6 -0.0248 -4.0399 -1.0899 21 8 -0.7978 -4.3837 -2.1539 22 6 0.6687 -2.8400 -1.0965 23 17 0.5518 -1.7740 -2.4616 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.6470 2.1161 0.0004 28 1 6.9369 1.5323 1.6575 29 1 5.3747 -0.0514 -0.0014 30 1 4.1393 -2.1583 -0.0100 31 1 2.1708 -3.0945 1.9372 32 1 0.9248 -5.2128 1.9353 33 1 -0.4718 -5.8250 0.0054 34 1 -0.3289 -4.8852 -2.8349 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242803212.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:06 Heat of formation + Delta-G solvation = -17.404974 kcal Electronic energy + Delta-G solvation = -19728.862258 eV Core-core repulsion = 16616.731926 eV Total energy + Delta-G solvation = -3112.130332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.61634 -37.90083 -36.36680 -35.92614 -34.06473 -31.51750 -31.15837 -29.54179 -28.80543 -25.83731 -25.26793 -22.32806 -22.22315 -20.47196 -19.92713 -17.97892 -16.96147 -16.40687 -15.73582 -15.45343 -15.17133 -14.35947 -13.94274 -13.87652 -13.67873 -13.01461 -12.66899 -12.53247 -12.16389 -11.95966 -11.73280 -11.54036 -11.49427 -11.15046 -11.01077 -10.93102 -10.82434 -10.52285 -10.34184 -10.10313 -9.67462 -9.47680 -9.25850 -8.40961 -8.31175 -7.47338 -7.20826 -6.86273 -4.42827 1.36001 1.41864 2.62175 2.66724 3.02429 3.06635 3.08070 3.11119 3.77163 3.86026 4.26475 4.52948 5.06377 5.24908 5.49795 5.54366 5.60671 5.86547 5.97306 6.05259 6.17144 6.34517 6.39813 6.40180 6.53756 6.64734 6.74918 6.88705 6.97130 6.98646 7.19789 7.31157 7.58780 7.66829 7.84811 8.00073 8.05176 8.21790 8.55873 8.80023 8.90507 10.07117 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.029157 B = 0.004478 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.096487 B = 6251.239064 C = 6669.360191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.022 4.022 3 C -0.227 4.227 4 C 0.122 3.878 5 C -0.454 4.454 6 H 0.080 0.920 7 C 0.076 3.924 8 N -0.785 5.785 9 Si 0.908 3.092 10 H -0.259 1.259 11 H -0.273 1.273 12 H -0.271 1.271 13 C -0.172 4.172 14 C -0.070 4.070 15 C -0.209 4.209 16 C 0.041 3.959 17 C -0.121 4.121 18 C -0.102 4.102 19 C -0.160 4.160 20 C 0.107 3.893 21 O -0.491 6.491 22 C -0.065 4.065 23 Cl -0.054 7.054 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.093 0.907 28 H 0.282 0.718 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.027 -9.250 -2.311 11.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.022 4.022 3 C -0.246 4.246 4 C 0.120 3.880 5 C -0.483 4.483 6 H 0.098 0.902 7 C -0.143 4.143 8 N -0.410 5.410 9 Si 0.732 3.268 10 H -0.183 1.183 11 H -0.199 1.199 12 H -0.196 1.196 13 C -0.191 4.191 14 C -0.089 4.089 15 C -0.210 4.210 16 C 0.040 3.960 17 C -0.139 4.139 18 C -0.120 4.120 19 C -0.178 4.178 20 C 0.062 3.938 21 O -0.301 6.301 22 C -0.092 4.092 23 Cl -0.025 7.025 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.136 0.864 30 H 0.105 0.895 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.274 -8.912 -1.982 11.078 hybrid contribution 0.940 0.400 -0.425 1.107 sum -5.334 -8.512 -2.407 10.330 Atomic orbital electron populations 1.20868 0.93906 1.00719 1.01412 1.18972 0.93326 0.92497 0.97428 1.20512 0.94195 0.95329 1.14587 1.17667 0.90868 0.93199 0.86287 1.19668 0.97989 0.96293 1.34313 0.90202 1.25967 0.98387 0.97383 0.92598 1.69817 1.17969 1.31704 1.21487 0.86254 0.79880 0.81271 0.79345 1.18284 1.19878 1.19599 1.20933 0.99647 0.91326 1.07187 1.20328 0.92051 0.96971 0.99549 1.17686 0.92423 0.89069 1.21843 1.18832 0.92383 0.94436 0.90339 1.21436 1.00414 0.93867 0.98205 1.20995 0.96439 0.96807 0.97795 1.21204 1.02045 1.00102 0.94483 1.18120 0.93640 0.92476 0.89566 1.84838 1.37667 1.76591 1.30998 1.21708 1.02205 0.93358 0.91913 1.98340 1.97081 1.64553 1.42520 0.91812 0.93242 0.92981 0.88854 0.90730 0.86438 0.89461 0.85101 0.85653 0.85452 0.75849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 8.53 36.01 0.31 -1.83 16 2 C -0.02 -0.49 5.29 -104.70 -0.55 -1.04 16 3 C -0.23 -5.50 9.36 -39.28 -0.37 -5.86 16 4 C 0.12 3.19 5.57 -106.80 -0.59 2.59 16 5 C -0.45 -11.74 9.03 -37.86 -0.34 -12.08 16 6 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 7 C 0.08 1.84 5.15 -17.33 -0.09 1.75 16 8 N -0.79 -19.66 10.95 55.55 0.61 -19.05 16 9 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 10 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 11 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 12 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 13 C -0.17 -4.34 8.62 -39.28 -0.34 -4.68 16 14 C -0.07 -1.61 9.66 -39.66 -0.38 -1.99 16 15 C -0.21 -4.51 4.69 -104.63 -0.49 -5.00 16 16 C 0.04 0.76 4.11 -104.87 -0.43 0.33 16 17 C -0.12 -1.94 9.74 -39.17 -0.38 -2.33 16 18 C -0.10 -1.35 10.03 -39.65 -0.40 -1.75 16 19 C -0.16 -2.10 9.98 -39.33 -0.39 -2.49 16 20 C 0.11 1.60 6.69 -39.25 -0.26 1.34 16 21 O -0.49 -6.41 12.96 -19.51 -0.25 -6.66 16 22 C -0.06 -1.12 5.64 -38.94 -0.22 -1.34 16 23 Cl -0.05 -0.95 24.69 -51.86 -1.28 -2.23 16 24 H 0.06 1.17 6.39 -51.93 -0.33 0.84 16 25 H 0.05 0.92 6.90 -51.93 -0.36 0.56 16 26 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 27 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 28 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 29 H 0.12 3.06 6.19 -52.48 -0.32 2.74 16 30 H 0.09 1.83 8.06 -52.48 -0.42 1.40 16 31 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 32 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.39 3.28 9.06 45.56 0.41 3.70 16 LS Contribution 304.69 15.07 4.59 4.59 Total: -1.00 -27.79 304.69 -8.98 -36.77 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -2.68 Total: 7.86 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: -4.94 Total: -34.39 kcal Atomic # 7 Polarization: -19.66 SS G_CDS: 0.61 Total: -19.05 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.25 Total: -6.66 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.28 Total: -2.23 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.79 -8.98 -36.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242803212.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.366 kcal (2) G-P(sol) polarization free energy of solvation -27.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds