Wall clock time and date at job start Tue Mar 31 2020 05:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36268 * 119.93743 * 2 1 4 4 C 1.40908 * 119.87657 * 180.02562 * 3 2 1 5 5 C 1.41027 * 120.11567 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99678 * 334.45669 * 5 4 3 7 7 C 1.40009 * 120.00206 * 154.46212 * 5 4 3 8 8 N 1.30791 * 119.99970 * 343.13993 * 7 5 4 9 9 Si 1.86797 * 119.99665 * 163.13957 * 7 5 4 10 10 H 1.48498 * 109.47396 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46982 * 120.00287 * 9 7 5 12 12 H 1.48501 * 109.47192 * 239.99590 * 9 7 5 13 13 C 1.40947 * 119.76993 * 359.97438 * 4 3 2 14 14 C 1.36225 * 119.87681 * 0.25968 * 13 4 3 15 15 C 1.39927 * 119.94045 * 180.02562 * 2 1 3 16 16 C 1.47963 * 119.88381 * 0.02562 * 15 2 1 17 17 C 1.39664 * 120.12630 * 244.72327 * 16 15 2 18 18 C 1.37918 * 119.97421 * 179.69796 * 17 16 15 19 19 C 1.38371 * 120.22276 * 0.57627 * 18 17 16 20 20 C 1.38791 * 120.25524 * 359.72296 * 19 18 17 21 21 O 1.35928 * 119.98752 * 179.97438 * 20 19 18 22 22 C 1.38588 * 120.02141 * 359.97438 * 20 19 18 23 23 Cl 1.73597 * 120.10973 * 180.02562 * 22 20 19 24 24 H 1.09001 * 109.46906 * 90.00452 * 1 2 3 25 25 H 1.09001 * 109.46699 * 210.00010 * 1 2 3 26 26 H 1.08995 * 109.47333 * 329.99994 * 1 2 3 27 27 H 1.08002 * 120.05686 * 0.02562 * 3 2 1 28 28 H 0.97001 * 120.00040 * 180.02562 * 8 7 5 29 29 H 1.08004 * 120.05929 * 179.97438 * 13 4 3 30 30 H 1.08003 * 119.93895 * 179.71859 * 14 13 4 31 31 H 1.07996 * 120.01019 * 359.97438 * 17 16 15 32 32 H 1.07994 * 119.89031 * 180.27726 * 18 17 16 33 33 H 1.07999 * 119.86466 * 179.69565 * 19 18 17 34 34 H 0.96700 * 113.99703 * 269.97855 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1871 1.1809 0.0000 4 6 3.5962 1.1794 -0.0005 5 6 4.3051 2.3985 -0.0011 6 1 3.8468 3.2894 -0.4044 7 6 5.6030 2.4539 0.5211 8 7 6.0379 1.4937 1.2954 9 14 6.7133 3.8992 0.1119 10 1 5.9897 4.8433 -0.7771 11 1 7.1006 4.5962 1.3647 12 1 7.9329 3.4068 -0.5777 13 6 4.2947 -0.0448 -0.0005 14 6 3.6051 -1.2196 -0.0054 15 6 2.2054 -1.2125 -0.0005 16 6 1.4617 -2.4917 -0.0017 17 6 1.5548 -3.3576 1.0901 18 6 0.8553 -4.5463 1.0884 19 6 0.0696 -4.8905 0.0027 20 6 -0.0248 -4.0399 -1.0899 21 8 -0.7978 -4.3837 -2.1539 22 6 0.6687 -2.8400 -1.0965 23 17 0.5518 -1.7740 -2.4616 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.6470 2.1161 0.0004 28 1 6.9369 1.5323 1.6575 29 1 5.3747 -0.0514 -0.0014 30 1 4.1393 -2.1583 -0.0100 31 1 2.1708 -3.0945 1.9372 32 1 0.9248 -5.2128 1.9353 33 1 -0.4718 -5.8250 0.0054 34 1 -0.3289 -4.8852 -2.8349 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242803212.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:06 Heat of formation + Delta-G solvation = -32.002522 kcal Electronic energy + Delta-G solvation = -19729.495255 eV Core-core repulsion = 16616.731926 eV Total energy + Delta-G solvation = -3112.763329 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.87452 -39.50555 -37.59635 -37.22938 -35.81007 -33.17474 -32.78084 -30.81911 -30.29802 -27.58147 -26.92722 -23.76301 -23.43441 -22.16655 -21.60418 -19.18124 -18.80632 -17.60565 -17.23284 -16.82659 -16.53476 -15.88432 -15.52921 -15.38999 -15.00090 -14.55223 -14.32876 -13.93190 -13.66433 -13.54927 -13.27545 -13.01843 -12.86701 -12.72054 -12.68685 -12.34748 -12.23442 -12.05444 -11.84091 -11.58585 -11.34522 -11.17900 -11.04486 -9.73922 -9.53064 -9.28297 -8.99773 -8.67178 -6.34790 0.17672 0.20575 0.94806 1.18981 1.34363 1.37535 1.48813 1.52628 2.19221 2.58479 2.71108 3.21962 3.69672 3.92014 4.16376 4.25389 4.33964 4.39090 4.46995 4.64407 4.71932 4.85510 4.91212 5.03764 5.07285 5.12942 5.24906 5.30278 5.39478 5.47885 5.56553 5.74380 5.78022 6.04865 6.12260 6.20900 6.37148 6.67748 6.77889 6.91116 7.02666 8.29331 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.029157 B = 0.004478 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.096487 B = 6251.239064 C = 6669.360191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.030 4.030 3 C -0.245 4.245 4 C 0.092 3.908 5 C -0.495 4.495 6 H 0.074 0.926 7 C 0.037 3.963 8 N -0.819 5.819 9 Si 0.981 3.019 10 H -0.259 1.259 11 H -0.264 1.264 12 H -0.263 1.263 13 C -0.193 4.193 14 C -0.077 4.077 15 C -0.191 4.191 16 C 0.008 3.992 17 C -0.130 4.130 18 C -0.087 4.087 19 C -0.143 4.143 20 C 0.111 3.889 21 O -0.496 6.496 22 C -0.079 4.079 23 Cl -0.069 7.069 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.290 0.710 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.129 0.871 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.314 -11.510 -2.093 13.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.030 4.030 3 C -0.265 4.265 4 C 0.089 3.911 5 C -0.524 4.524 6 H 0.093 0.907 7 C -0.178 4.178 8 N -0.444 5.444 9 Si 0.802 3.198 10 H -0.183 1.183 11 H -0.188 1.188 12 H -0.188 1.188 13 C -0.212 4.212 14 C -0.096 4.096 15 C -0.192 4.192 16 C 0.007 3.993 17 C -0.148 4.148 18 C -0.105 4.105 19 C -0.162 4.162 20 C 0.065 3.935 21 O -0.308 6.308 22 C -0.106 4.106 23 Cl -0.040 7.040 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.147 0.853 32 H 0.182 0.818 33 H 0.181 0.819 34 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -7.573 -11.197 -1.776 13.633 hybrid contribution 1.154 0.824 -0.504 1.505 sum -6.419 -10.372 -2.279 12.409 Atomic orbital electron populations 1.20809 0.91545 1.01551 1.02059 1.19333 0.95145 0.92061 0.96446 1.20681 0.93898 0.96367 1.15505 1.17975 0.91896 0.93743 0.87454 1.19858 0.99701 0.96288 1.36519 0.90741 1.26763 0.99114 1.00188 0.91782 1.69860 1.18730 1.33557 1.22254 0.85170 0.77696 0.77665 0.79272 1.18305 1.18848 1.18776 1.20879 0.99038 0.92220 1.09105 1.20554 0.93108 0.96765 0.99136 1.17999 0.92091 0.90775 1.18370 1.18697 0.94221 0.93938 0.92395 1.21512 1.01114 0.94717 0.97465 1.21369 0.94552 0.95732 0.98834 1.21635 1.00829 1.00636 0.93082 1.18239 0.92821 0.91709 0.90699 1.84789 1.37749 1.76973 1.31303 1.21813 1.03107 0.94374 0.91321 1.98333 1.97189 1.65253 1.43195 0.91154 0.92466 0.91977 0.88849 0.89961 0.88106 0.87925 0.85324 0.81819 0.81857 0.73371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.86 8.53 71.24 0.61 -3.25 16 2 C -0.03 -1.34 5.29 -19.91 -0.11 -1.44 16 3 C -0.25 -12.38 9.36 22.46 0.21 -12.17 16 4 C 0.09 5.04 5.57 -21.28 -0.12 4.92 16 5 C -0.49 -27.00 9.03 23.38 0.21 -26.79 16 6 H 0.07 3.95 7.90 -2.91 -0.02 3.93 16 7 C 0.04 1.88 5.15 85.28 0.44 2.32 16 8 N -0.82 -42.64 10.95 21.84 0.24 -42.40 16 9 Si 0.98 38.18 29.59 68.60 2.03 40.21 16 10 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 11 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 12 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 13 C -0.19 -10.27 8.62 22.46 0.19 -10.08 16 14 C -0.08 -3.63 9.66 22.22 0.21 -3.42 16 15 C -0.19 -8.31 4.69 -19.87 -0.09 -8.40 16 16 C 0.01 0.30 4.11 -20.03 -0.08 0.22 16 17 C -0.13 -3.85 9.74 22.54 0.22 -3.63 16 18 C -0.09 -1.90 10.03 22.23 0.22 -1.68 16 19 C -0.14 -3.03 9.98 22.43 0.22 -2.81 16 20 C 0.11 2.91 6.69 22.49 0.15 3.06 16 21 O -0.50 -11.12 12.96 -92.73 -1.20 -12.33 16 22 C -0.08 -2.58 5.64 22.68 0.13 -2.45 16 23 Cl -0.07 -2.36 24.69 -2.72 -0.07 -2.43 16 24 H 0.07 2.54 6.39 -2.39 -0.02 2.53 16 25 H 0.06 2.04 6.90 -2.39 -0.02 2.02 16 26 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 27 H 0.09 4.54 8.06 -2.91 -0.02 4.52 16 28 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 29 H 0.10 5.59 6.19 -2.91 -0.02 5.57 16 30 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 31 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 32 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.41 5.45 9.06 -74.06 -0.67 4.78 16 Total: -1.00 -62.81 304.69 3.89 -58.92 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.47 Total: 23.63 kcal Atomic # 6 Polarization: -68.04 SS G_CDS: 2.42 Total: -65.62 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.24 Total: -42.40 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -1.20 Total: -12.33 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.07 Total: -2.43 kcal Total: -62.81 3.89 -58.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242803212.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.918 kcal (2) G-P(sol) polarization free energy of solvation -62.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds