Wall clock time and date at job start Tue Mar 31 2020 06:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76206 * 102.99967 * 2 1 4 4 C 1.39346 * 119.91917 * 180.02562 * 3 2 1 5 5 C 1.37597 * 120.11486 * 179.72696 * 4 3 2 6 6 C 1.39804 * 119.96307 * 0.25334 * 5 4 3 7 7 C 1.47740 * 120.07769 * 180.02562 * 6 5 4 8 8 C 1.40072 * 119.89369 * 309.72904 * 7 6 5 9 9 C 1.36166 * 120.10959 * 179.71685 * 8 7 6 10 10 C 1.40973 * 119.88869 * 0.53328 * 9 8 7 11 11 C 1.40945 * 120.10748 * 179.72029 * 10 9 8 12 12 H 1.08004 * 120.00012 * 24.74304 * 11 10 9 13 13 C 1.39927 * 120.00301 * 204.74530 * 11 10 9 14 14 N 1.30852 * 119.99792 * 18.00181 * 13 11 10 15 15 Si 1.86796 * 120.00478 * 198.00362 * 13 11 10 16 16 H 1.48502 * 109.47056 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47487 * 119.99688 * 15 13 11 18 18 H 1.48504 * 109.47362 * 240.00109 * 15 13 11 19 19 C 1.40982 * 119.78522 * 359.73573 * 10 9 8 20 20 C 1.36169 * 119.88869 * 0.02562 * 19 10 9 21 21 C 1.40027 * 119.84696 * 0.02562 * 6 5 4 22 22 F 1.35093 * 120.06479 * 179.97438 * 21 6 5 23 23 C 1.37914 * 119.87521 * 359.97438 * 21 6 5 24 24 H 1.08997 * 109.47218 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46987 * 299.99751 * 1 2 3 26 26 H 1.08994 * 109.47523 * 59.99785 * 1 2 3 27 27 H 1.07992 * 119.94567 * 359.97438 * 4 3 2 28 28 H 1.08002 * 120.01400 * 180.27560 * 5 4 3 29 29 H 1.08004 * 119.94312 * 0.02562 * 8 7 6 30 30 H 1.08004 * 120.05433 * 180.27123 * 9 8 7 31 31 H 0.97000 * 120.00419 * 179.97438 * 14 13 11 32 32 H 1.08001 * 120.05132 * 179.97438 * 19 10 9 33 33 H 1.08003 * 119.93970 * 180.02562 * 20 19 10 34 34 H 1.08006 * 119.97992 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5435 2.1224 -0.0005 5 6 3.8576 3.4621 -0.0062 6 6 2.8378 4.4184 -0.0061 7 6 3.1721 5.8574 -0.0127 8 6 4.0896 6.3652 0.9159 9 6 4.4053 7.6898 0.9100 10 6 3.7987 8.5524 -0.0256 11 6 4.1177 9.9252 -0.0320 12 1 5.0652 10.2613 0.3627 13 6 3.2068 10.8528 -0.5495 14 7 1.9497 10.5219 -0.6989 15 14 3.7853 12.5635 -1.0272 16 1 5.2414 12.6857 -0.7619 17 1 3.5242 12.7891 -2.4715 18 1 3.0503 13.5760 -0.2272 19 6 2.8716 8.0374 -0.9545 20 6 2.5661 6.7105 -0.9438 21 6 1.4986 4.0091 0.0004 22 9 0.5097 4.9294 0.0010 23 6 1.1912 2.6647 0.0060 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 4.3315 1.3841 -0.0005 28 1 4.8914 3.7745 -0.0111 29 1 4.5510 5.7042 1.6346 30 1 5.1161 8.0796 1.6236 31 1 1.3181 11.1650 -1.0573 32 1 2.4040 8.6945 -1.6729 33 1 1.8563 6.3151 -1.6554 34 1 0.1589 2.3471 0.0114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242813281.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:04 Heat of formation + Delta-G solvation = -12.412609 kcal Electronic energy + Delta-G solvation = -19113.154365 eV Core-core repulsion = 16015.657014 eV Total energy + Delta-G solvation = -3097.497351 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.35676 -38.74364 -37.30043 -34.01224 -31.77615 -30.67158 -29.56304 -29.07504 -28.60778 -25.39998 -22.75131 -22.30883 -20.76388 -20.21801 -17.96502 -17.44796 -16.20312 -15.99377 -15.56235 -15.38157 -15.08275 -14.48429 -14.02537 -13.89892 -13.80527 -13.42767 -13.22124 -12.72907 -12.52835 -12.28768 -12.18204 -12.07211 -11.76130 -11.28675 -11.24166 -11.07759 -10.66684 -10.54108 -10.32471 -9.81814 -9.65342 -9.44021 -9.08372 -8.60464 -7.69262 -7.61480 -7.06163 -6.91382 -4.46815 1.22628 1.46105 1.47953 2.32163 2.62985 2.99314 3.04231 3.06595 3.07823 3.80622 3.83979 4.48032 4.69226 4.88283 4.88883 4.92752 5.20115 5.39402 5.45837 5.55332 5.64082 5.83037 6.15128 6.22802 6.27363 6.33754 6.47755 6.67945 6.85651 6.92244 7.10050 7.18697 7.22534 7.51199 7.78066 7.93001 7.99764 8.14841 8.49512 8.72591 8.83903 9.99740 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.042476 B = 0.003365 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.031696 B = 8319.309525 C = 8791.577893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.125 6.125 3 C -0.090 4.090 4 C -0.103 4.103 5 C -0.087 4.087 6 C -0.012 4.012 7 C -0.215 4.215 8 C -0.058 4.058 9 C -0.231 4.231 10 C 0.120 3.880 11 C -0.448 4.448 12 H 0.082 0.918 13 C 0.073 3.927 14 N -0.778 5.778 15 Si 0.911 3.089 16 H -0.258 1.258 17 H -0.270 1.270 18 H -0.273 1.273 19 C -0.171 4.171 20 C -0.066 4.066 21 C 0.102 3.898 22 F -0.132 7.132 23 C -0.164 4.164 24 H 0.105 0.895 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.127 0.873 28 H 0.135 0.865 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.284 0.716 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.540 -13.281 -0.091 13.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.115 5.885 3 C -0.202 4.202 4 C -0.127 4.127 5 C -0.107 4.107 6 C -0.015 4.015 7 C -0.217 4.217 8 C -0.076 4.076 9 C -0.251 4.251 10 C 0.117 3.883 11 C -0.476 4.476 12 H 0.100 0.900 13 C -0.146 4.146 14 N -0.402 5.402 15 Si 0.735 3.265 16 H -0.182 1.182 17 H -0.195 1.195 18 H -0.198 1.198 19 C -0.191 4.191 20 C -0.084 4.084 21 C 0.081 3.919 22 F -0.110 7.110 23 C -0.188 4.188 24 H 0.124 0.876 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.145 0.855 28 H 0.153 0.847 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.136 0.864 33 H 0.105 0.895 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.186 -14.192 -0.157 14.242 hybrid contribution -1.050 2.070 -0.175 2.327 sum -2.236 -12.122 -0.332 12.331 Atomic orbital electron populations 1.23646 0.95004 1.06774 1.05800 1.85251 1.06261 1.03600 1.93348 1.21325 0.96019 0.95484 1.07375 1.20640 0.93834 0.96099 1.02098 1.21142 0.99251 0.91034 0.99293 1.19180 0.90278 0.95017 0.96992 1.17857 1.08737 0.89428 1.05650 1.20272 0.95838 0.95081 0.96447 1.20637 1.07886 0.93746 1.02799 1.17726 0.89327 0.92903 0.88311 1.19693 1.02668 0.91404 1.33883 0.89970 1.26026 0.94143 1.01561 0.92920 1.69855 1.02657 1.36824 1.30839 0.86213 0.80445 0.80775 0.79102 1.18191 1.19495 1.19799 1.20956 1.03311 0.93390 1.01404 1.20424 0.97242 0.93865 0.96911 1.17695 0.85278 0.85311 1.03584 1.91501 1.60094 1.65697 1.93717 1.20898 0.99099 0.91487 1.07353 0.87609 0.89763 0.89761 0.85500 0.84738 0.89137 0.88674 0.90513 0.86356 0.89456 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.14 101.05 0.92 -0.31 16 2 S -0.13 -1.46 22.56 -107.50 -2.43 -3.88 16 3 C -0.09 -1.29 6.13 -38.82 -0.24 -1.53 16 4 C -0.10 -1.48 9.77 -39.40 -0.39 -1.87 16 5 C -0.09 -1.41 9.49 -39.23 -0.37 -1.79 16 6 C -0.01 -0.23 5.48 -104.76 -0.57 -0.80 16 7 C -0.22 -4.80 5.34 -104.64 -0.56 -5.36 16 8 C -0.06 -1.28 9.44 -39.64 -0.37 -1.66 16 9 C -0.23 -5.54 9.73 -39.29 -0.38 -5.92 16 10 C 0.12 3.13 5.57 -106.80 -0.60 2.53 16 11 C -0.45 -11.48 9.02 -37.93 -0.34 -11.82 16 12 H 0.08 2.01 7.91 -52.48 -0.42 1.59 16 13 C 0.07 1.78 5.13 -17.34 -0.09 1.69 16 14 N -0.78 -19.57 10.96 55.55 0.61 -18.96 16 15 Si 0.91 17.91 29.60 -169.99 -5.03 12.88 16 16 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 17 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 18 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 19 C -0.17 -4.41 8.63 -39.29 -0.34 -4.75 16 20 C -0.07 -1.57 8.78 -39.64 -0.35 -1.92 16 21 C 0.10 1.90 7.15 -39.03 -0.28 1.62 16 22 F -0.13 -2.67 15.88 2.25 0.04 -2.64 16 23 C -0.16 -2.53 9.32 -39.35 -0.37 -2.90 16 24 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 0.71 7.73 -51.92 -0.40 0.30 16 26 H 0.08 0.71 7.75 -51.93 -0.40 0.30 16 27 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.13 1.99 8.04 -52.49 -0.42 1.56 16 29 H 0.09 1.76 8.04 -52.48 -0.42 1.33 16 30 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 31 H 0.28 6.43 8.30 -40.82 -0.34 6.10 16 32 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 33 H 0.09 1.98 7.77 -52.48 -0.41 1.57 16 34 H 0.13 1.68 5.86 -52.48 -0.31 1.37 16 LS Contribution 310.24 15.07 4.68 4.68 Total: -1.00 -27.07 310.24 -9.96 -37.03 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -3.50 Total: 5.67 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: -4.32 Total: -34.78 kcal Atomic # 7 Polarization: -19.57 SS G_CDS: 0.61 Total: -18.96 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.43 Total: -3.88 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.07 -9.96 -37.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242813281.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.619 kcal (2) G-P(sol) polarization free energy of solvation -27.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds