Wall clock time and date at job start Tue Mar 31 2020 06:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76206 * 102.99967 * 2 1 4 4 C 1.39346 * 119.91917 * 180.02562 * 3 2 1 5 5 C 1.37597 * 120.11486 * 179.72696 * 4 3 2 6 6 C 1.39804 * 119.96307 * 0.25334 * 5 4 3 7 7 C 1.47740 * 120.07769 * 180.02562 * 6 5 4 8 8 C 1.40072 * 119.89369 * 309.72904 * 7 6 5 9 9 C 1.36166 * 120.10959 * 179.71685 * 8 7 6 10 10 C 1.40973 * 119.88869 * 0.53328 * 9 8 7 11 11 C 1.40945 * 120.10748 * 179.72029 * 10 9 8 12 12 H 1.08004 * 120.00012 * 24.74304 * 11 10 9 13 13 C 1.39927 * 120.00301 * 204.74530 * 11 10 9 14 14 N 1.30852 * 119.99792 * 18.00181 * 13 11 10 15 15 Si 1.86796 * 120.00478 * 198.00362 * 13 11 10 16 16 H 1.48502 * 109.47056 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47487 * 119.99688 * 15 13 11 18 18 H 1.48504 * 109.47362 * 240.00109 * 15 13 11 19 19 C 1.40982 * 119.78522 * 359.73573 * 10 9 8 20 20 C 1.36169 * 119.88869 * 0.02562 * 19 10 9 21 21 C 1.40027 * 119.84696 * 0.02562 * 6 5 4 22 22 F 1.35093 * 120.06479 * 179.97438 * 21 6 5 23 23 C 1.37914 * 119.87521 * 359.97438 * 21 6 5 24 24 H 1.08997 * 109.47218 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46987 * 299.99751 * 1 2 3 26 26 H 1.08994 * 109.47523 * 59.99785 * 1 2 3 27 27 H 1.07992 * 119.94567 * 359.97438 * 4 3 2 28 28 H 1.08002 * 120.01400 * 180.27560 * 5 4 3 29 29 H 1.08004 * 119.94312 * 0.02562 * 8 7 6 30 30 H 1.08004 * 120.05433 * 180.27123 * 9 8 7 31 31 H 0.97000 * 120.00419 * 179.97438 * 14 13 11 32 32 H 1.08001 * 120.05132 * 179.97438 * 19 10 9 33 33 H 1.08003 * 119.93970 * 180.02562 * 20 19 10 34 34 H 1.08006 * 119.97992 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5435 2.1224 -0.0005 5 6 3.8576 3.4621 -0.0062 6 6 2.8378 4.4184 -0.0061 7 6 3.1721 5.8574 -0.0127 8 6 4.0896 6.3652 0.9159 9 6 4.4053 7.6898 0.9100 10 6 3.7987 8.5524 -0.0256 11 6 4.1177 9.9252 -0.0320 12 1 5.0652 10.2613 0.3627 13 6 3.2068 10.8528 -0.5495 14 7 1.9497 10.5219 -0.6989 15 14 3.7853 12.5635 -1.0272 16 1 5.2414 12.6857 -0.7619 17 1 3.5242 12.7891 -2.4715 18 1 3.0503 13.5760 -0.2272 19 6 2.8716 8.0374 -0.9545 20 6 2.5661 6.7105 -0.9438 21 6 1.4986 4.0091 0.0004 22 9 0.5097 4.9294 0.0010 23 6 1.1912 2.6647 0.0060 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 4.3315 1.3841 -0.0005 28 1 4.8914 3.7745 -0.0111 29 1 4.5510 5.7042 1.6346 30 1 5.1161 8.0796 1.6236 31 1 1.3181 11.1650 -1.0573 32 1 2.4040 8.6945 -1.6729 33 1 1.8563 6.3151 -1.6554 34 1 0.1589 2.3471 0.0114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242813281.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:04 Heat of formation + Delta-G solvation = -23.387932 kcal Electronic energy + Delta-G solvation = -19113.630290 eV Core-core repulsion = 16015.657014 eV Total energy + Delta-G solvation = -3097.973277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.84902 -40.18965 -38.96209 -35.77975 -33.29338 -31.97181 -31.35317 -30.48261 -29.63020 -27.10980 -24.22032 -23.71040 -22.53962 -21.88695 -19.32253 -19.17832 -17.65761 -17.38346 -17.03294 -16.72245 -16.58649 -15.85641 -15.59342 -15.20688 -14.98251 -14.64401 -14.55902 -14.25410 -13.93264 -13.86880 -13.64746 -13.35634 -13.21455 -12.92462 -12.72806 -12.67147 -12.22148 -12.05292 -11.59709 -11.41800 -11.27282 -11.16435 -10.56256 -9.87859 -9.52045 -9.28400 -8.72839 -8.27834 -6.37116 -0.10486 0.19576 0.54021 0.92026 1.16114 1.37208 1.41178 1.48579 1.53435 2.17134 2.47406 2.72086 3.37140 3.64182 3.78468 3.95485 4.06222 4.24711 4.27260 4.34108 4.38146 4.45545 4.58047 4.85429 4.90000 5.01945 5.04255 5.09775 5.19998 5.23735 5.34698 5.43038 5.65721 5.76610 5.99642 6.04800 6.14222 6.28635 6.61429 6.84695 6.96149 8.23884 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.042476 B = 0.003365 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.031696 B = 8319.309525 C = 8791.577893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.113 6.113 3 C -0.084 4.084 4 C -0.099 4.099 5 C -0.079 4.079 6 C -0.049 4.049 7 C -0.203 4.203 8 C -0.061 4.061 9 C -0.243 4.243 10 C 0.089 3.911 11 C -0.486 4.486 12 H 0.083 0.917 13 C 0.033 3.967 14 N -0.817 5.817 15 Si 0.987 3.013 16 H -0.254 1.254 17 H -0.264 1.264 18 H -0.265 1.265 19 C -0.193 4.193 20 C -0.078 4.078 21 C 0.082 3.918 22 F -0.151 7.151 23 C -0.163 4.163 24 H 0.132 0.868 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.158 0.842 28 H 0.148 0.852 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.291 0.709 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.295 -15.954 0.197 16.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.128 5.872 3 C -0.196 4.196 4 C -0.123 4.123 5 C -0.098 4.098 6 C -0.052 4.052 7 C -0.204 4.204 8 C -0.079 4.079 9 C -0.263 4.263 10 C 0.086 3.914 11 C -0.515 4.515 12 H 0.101 0.899 13 C -0.184 4.184 14 N -0.442 5.442 15 Si 0.807 3.193 16 H -0.177 1.177 17 H -0.189 1.189 18 H -0.189 1.189 19 C -0.213 4.213 20 C -0.096 4.096 21 C 0.061 3.939 22 F -0.129 7.129 23 C -0.187 4.187 24 H 0.150 0.850 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.175 0.825 28 H 0.166 0.834 29 H 0.140 0.860 30 H 0.124 0.876 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.943 -16.904 0.137 16.931 hybrid contribution -1.217 2.457 -0.234 2.752 sum -2.160 -14.447 -0.097 14.608 Atomic orbital electron populations 1.23829 0.92420 1.08728 1.06337 1.85315 1.09105 1.00279 1.92486 1.21760 0.95939 0.97465 1.04440 1.20985 0.94786 0.95826 1.00655 1.21286 0.99125 0.91380 0.98026 1.19124 0.91562 0.93739 1.00764 1.18178 1.07037 0.91230 1.03968 1.20592 0.95752 0.94832 0.96762 1.20872 1.08178 0.94528 1.02685 1.18054 0.90241 0.93891 0.89218 1.19919 1.03381 0.91946 1.36211 0.89877 1.26903 0.93824 1.05522 0.92111 1.69912 1.03825 1.38572 1.31867 0.85089 0.79947 0.75449 0.78839 1.17748 1.18861 1.18939 1.20901 1.04434 0.94056 1.01877 1.20568 0.97705 0.93626 0.97728 1.18002 0.84738 0.86318 1.04814 1.91452 1.60779 1.66648 1.94064 1.21096 1.00697 0.90190 1.06734 0.84974 0.89220 0.89264 0.82466 0.83417 0.86029 0.87639 0.89843 0.88165 0.89191 0.83246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.14 113.37 1.04 -0.85 16 2 S -0.11 -2.18 22.56 -56.49 -1.27 -3.46 16 3 C -0.08 -2.12 6.13 22.76 0.14 -1.98 16 4 C -0.10 -2.51 9.77 22.38 0.22 -2.29 16 5 C -0.08 -2.36 9.49 22.50 0.21 -2.15 16 6 C -0.05 -1.84 5.48 -19.95 -0.11 -1.95 16 7 C -0.20 -9.16 5.34 -19.88 -0.11 -9.26 16 8 C -0.06 -2.72 9.44 22.23 0.21 -2.51 16 9 C -0.24 -11.96 9.73 22.46 0.22 -11.74 16 10 C 0.09 4.84 5.57 -21.27 -0.12 4.72 16 11 C -0.49 -26.06 9.02 23.34 0.21 -25.85 16 12 H 0.08 4.24 7.91 -2.91 -0.02 4.22 16 13 C 0.03 1.64 5.13 85.25 0.44 2.07 16 14 N -0.82 -43.07 10.96 21.82 0.24 -42.83 16 15 Si 0.99 37.64 29.60 68.60 2.03 39.67 16 16 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 17 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 18 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 19 C -0.19 -10.55 8.63 22.46 0.19 -10.36 16 20 C -0.08 -3.88 8.78 22.23 0.20 -3.68 16 21 C 0.08 2.99 7.15 22.63 0.16 3.15 16 22 F -0.15 -6.23 15.88 44.97 0.71 -5.51 16 23 C -0.16 -4.65 9.32 22.42 0.21 -4.44 16 24 H 0.13 1.08 8.14 -2.39 -0.02 1.07 16 25 H 0.09 1.14 7.73 -2.39 -0.02 1.12 16 26 H 0.09 1.14 7.75 -2.39 -0.02 1.12 16 27 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 28 H 0.15 3.98 8.04 -2.91 -0.02 3.96 16 29 H 0.12 4.54 8.04 -2.91 -0.02 4.51 16 30 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 31 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 32 H 0.10 5.71 6.16 -2.91 -0.02 5.69 16 33 H 0.09 4.29 7.77 -2.91 -0.02 4.27 16 34 H 0.15 3.52 5.86 -2.91 -0.02 3.50 16 Total: -1.00 -61.58 310.24 5.94 -55.64 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 1.12 Total: 23.60 kcal Atomic # 6 Polarization: -70.23 SS G_CDS: 3.11 Total: -67.12 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.24 Total: -42.83 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.71 Total: -5.51 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Atomic # 16 Polarization: -2.18 SS G_CDS: -1.27 Total: -3.46 kcal Total: -61.58 5.94 -55.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242813281.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.254 kcal (2) G-P(sol) polarization free energy of solvation -61.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds