Wall clock time and date at job start Tue Mar 31 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76200 * 103.00061 * 2 1 4 4 C 1.39133 * 119.94902 * 179.97438 * 3 2 1 5 5 C 1.37804 * 120.09764 * 180.02562 * 4 3 2 6 6 C 1.39424 * 119.97919 * 359.97438 * 5 4 3 7 7 C 1.48320 * 120.05089 * 179.97438 * 6 5 4 8 8 C 1.39776 * 120.00164 * 130.02265 * 7 6 5 9 9 C 1.38385 * 120.37341 * 180.02562 * 8 7 6 10 10 C 1.37726 * 120.38048 * 359.95973 * 9 8 7 11 11 C 1.40766 * 119.99831 * 0.02562 * 10 9 8 12 12 C 1.41426 * 120.18228 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00052 * 204.51570 * 12 11 10 14 14 C 1.39927 * 120.00075 * 24.51700 * 12 11 10 15 15 N 1.30834 * 120.00110 * 17.90171 * 14 12 11 16 16 Si 1.86801 * 119.99810 * 197.90375 * 14 12 11 17 17 H 1.48503 * 109.47027 * 89.99880 * 16 14 12 18 18 H 1.48499 * 109.47004 * 209.99848 * 16 14 12 19 19 H 1.48496 * 109.47515 * 329.99785 * 16 14 12 20 20 C 1.38770 * 120.00606 * 309.75126 * 7 6 5 21 21 C 1.39627 * 119.89743 * 0.02562 * 6 5 4 22 22 F 1.35093 * 120.04987 * 179.97438 * 21 6 5 23 23 C 1.38083 * 119.90514 * 0.25201 * 21 6 5 24 24 H 1.09006 * 109.46935 * 59.99455 * 1 2 3 25 25 H 1.08996 * 109.47662 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47178 * 300.00268 * 1 2 3 27 27 H 1.07997 * 119.95345 * 0.02736 * 4 3 2 28 28 H 1.07991 * 120.01105 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.81700 * 0.02562 * 8 7 6 30 30 H 1.08004 * 119.80756 * 179.97438 * 9 8 7 31 31 H 1.08001 * 119.99793 * 180.02562 * 10 9 8 32 32 H 0.96997 * 119.99826 * 180.02562 * 15 14 12 33 33 H 1.08004 * 120.18935 * 359.97387 * 20 7 6 34 34 H 1.08002 * 119.99310 * 179.74594 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5413 2.1224 0.0005 5 6 3.8548 3.4643 0.0011 6 6 2.8372 4.4175 0.0005 7 6 3.1728 5.8622 0.0017 8 6 2.5737 6.7197 -0.9254 9 6 2.8816 8.0688 -0.9316 10 6 3.7812 8.5821 -0.0238 11 6 4.3937 7.7329 0.9171 12 6 5.3184 8.2558 1.8507 13 1 6.0659 7.6114 2.2892 14 6 5.2648 9.6080 2.2064 15 7 4.1830 10.3046 1.9688 16 14 6.7378 10.4188 3.0203 17 1 7.6305 10.9846 1.9771 18 1 6.2713 11.5073 3.9162 19 1 7.4825 9.4090 3.8146 20 6 4.0774 6.3638 0.9268 21 6 1.5018 4.0099 0.0000 22 9 0.5134 4.9308 0.0000 23 6 1.1928 2.6641 0.0053 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 4.3298 1.3845 0.0005 28 1 4.8882 3.7776 0.0019 29 1 1.8664 6.3271 -1.6411 30 1 2.4135 8.7230 -1.6523 31 1 4.0166 9.6361 -0.0339 32 1 4.1460 11.2420 2.2151 33 1 4.5386 5.7050 1.6477 34 1 0.1603 2.3472 0.0090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242813703.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:06 Heat of formation + Delta-G solvation = -11.528139 kcal Electronic energy + Delta-G solvation = -19144.953419 eV Core-core repulsion = 16047.494421 eV Total energy + Delta-G solvation = -3097.458997 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.50566 -38.88474 -37.23853 -33.86924 -31.93234 -30.71152 -29.89939 -29.05672 -27.98204 -25.32694 -23.17971 -22.47885 -20.57828 -20.30287 -18.12166 -17.37260 -16.14320 -15.74979 -15.66641 -15.30632 -15.26414 -14.63987 -14.14990 -13.96120 -13.90564 -13.41258 -13.32079 -12.84727 -12.56833 -12.38765 -12.36047 -11.83837 -11.64401 -11.29944 -11.08726 -11.01247 -10.78839 -10.50230 -10.45412 -9.78363 -9.57853 -9.36094 -9.18082 -8.70177 -7.72855 -7.53008 -7.06640 -6.78519 -4.40216 1.11229 1.34465 1.39009 2.23379 2.74323 2.84991 3.06004 3.09363 3.18317 3.74851 3.91189 4.52565 4.59701 4.82682 4.83300 4.83599 5.11313 5.20443 5.38336 5.47604 5.63346 5.70515 6.10172 6.16383 6.25590 6.34743 6.41316 6.57122 6.85184 6.92249 7.04719 7.18331 7.26819 7.48645 7.77528 7.96195 7.99628 8.20028 8.56958 8.84202 8.89464 10.16269 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.030157 B = 0.003603 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.257990 B = 7770.499496 C = 8308.991058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.119 6.119 3 C -0.076 4.076 4 C -0.108 4.108 5 C -0.069 4.069 6 C -0.043 4.043 7 C -0.048 4.048 8 C -0.210 4.210 9 C -0.107 4.107 10 C -0.153 4.153 11 C 0.107 3.893 12 C -0.465 4.465 13 H 0.078 0.922 14 C 0.076 3.924 15 N -0.794 5.794 16 Si 0.909 3.091 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.262 1.262 20 C -0.198 4.198 21 C 0.120 3.880 22 F -0.129 7.129 23 C -0.170 4.170 24 H 0.084 0.916 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.131 0.869 28 H 0.140 0.860 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.281 0.719 33 H 0.096 0.904 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.072 -13.776 -3.148 14.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.123 5.877 3 C -0.188 4.188 4 C -0.132 4.132 5 C -0.089 4.089 6 C -0.046 4.046 7 C -0.048 4.048 8 C -0.229 4.229 9 C -0.126 4.126 10 C -0.172 4.172 11 C 0.105 3.895 12 C -0.494 4.494 13 H 0.097 0.903 14 C -0.141 4.141 15 N -0.420 5.420 16 Si 0.733 3.267 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.186 1.186 20 C -0.217 4.217 21 C 0.099 3.901 22 F -0.108 7.108 23 C -0.195 4.195 24 H 0.103 0.897 25 H 0.125 0.875 26 H 0.103 0.897 27 H 0.149 0.851 28 H 0.158 0.842 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.138 0.862 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.589 -14.569 -3.095 15.321 hybrid contribution -0.589 1.775 0.426 1.918 sum -4.177 -12.795 -2.669 13.721 Atomic orbital electron populations 1.23672 0.94923 1.06923 1.05872 1.85332 1.06319 1.03087 1.93011 1.21362 0.96082 0.95837 1.05552 1.20687 0.93991 0.96109 1.02394 1.21143 0.99494 0.90992 0.97242 1.19299 0.90788 0.95295 0.99201 1.18135 0.99736 0.88634 0.98336 1.20356 1.05845 0.93655 1.03068 1.20619 0.98931 0.94140 0.98877 1.21447 0.99942 1.00400 0.95435 1.17520 0.90689 0.90471 0.90868 1.19557 1.14049 0.94070 1.21751 0.90346 1.25897 0.96228 0.97463 0.94559 1.69824 1.25648 1.09540 1.36971 0.86307 0.81763 0.79165 0.79463 1.19262 1.20341 1.18600 1.21004 1.02940 0.96336 1.01455 1.17567 0.85022 0.85411 1.02132 1.91511 1.60109 1.65593 1.93569 1.20923 0.99319 0.91349 1.07887 0.89696 0.87479 0.89656 0.85101 0.84223 0.89388 0.89062 0.86249 0.90832 0.88577 0.85100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.14 101.05 0.92 -0.24 16 2 S -0.12 -1.32 22.56 -107.50 -2.43 -3.74 16 3 C -0.08 -1.05 6.12 -38.96 -0.24 -1.29 16 4 C -0.11 -1.52 9.77 -39.41 -0.39 -1.90 16 5 C -0.07 -1.11 9.49 -39.30 -0.37 -1.48 16 6 C -0.04 -0.82 5.48 -104.79 -0.57 -1.39 16 7 C -0.05 -1.09 5.31 -104.98 -0.56 -1.64 16 8 C -0.21 -4.79 8.87 -38.95 -0.35 -5.13 16 9 C -0.11 -2.53 10.01 -39.71 -0.40 -2.93 16 10 C -0.15 -3.95 8.69 -38.81 -0.34 -4.28 16 11 C 0.11 2.81 5.57 -106.87 -0.60 2.22 16 12 C -0.46 -12.16 9.05 -37.74 -0.34 -12.50 16 13 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 14 C 0.08 1.89 5.14 -17.34 -0.09 1.81 16 15 N -0.79 -20.43 10.96 55.55 0.61 -19.82 16 16 Si 0.91 18.48 29.60 -169.99 -5.03 13.45 16 17 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 18 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 19 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 20 C -0.20 -4.78 9.24 -38.52 -0.36 -5.14 16 21 C 0.12 2.14 7.15 -39.12 -0.28 1.86 16 22 F -0.13 -2.50 15.87 2.25 0.04 -2.47 16 23 C -0.17 -2.51 9.33 -39.35 -0.37 -2.88 16 24 H 0.08 0.65 7.75 -51.92 -0.40 0.25 16 25 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.66 7.73 -51.92 -0.40 0.26 16 27 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 28 H 0.14 2.10 8.04 -52.49 -0.42 1.68 16 29 H 0.09 1.87 7.76 -52.49 -0.41 1.46 16 30 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 31 H 0.12 3.16 6.15 -52.49 -0.32 2.84 16 32 H 0.28 6.56 8.30 -40.82 -0.34 6.23 16 33 H 0.10 2.19 8.04 -52.48 -0.42 1.77 16 34 H 0.13 1.61 5.86 -52.49 -0.31 1.30 16 LS Contribution 310.44 15.07 4.68 4.68 Total: -1.00 -27.72 310.44 -9.95 -37.66 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -3.50 Total: 5.16 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: -4.31 Total: -34.92 kcal Atomic # 7 Polarization: -20.43 SS G_CDS: 0.61 Total: -19.82 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 16 Polarization: -1.32 SS G_CDS: -2.43 Total: -3.74 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.72 -9.95 -37.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242813703.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.137 kcal (2) G-P(sol) polarization free energy of solvation -27.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds