Wall clock time and date at job start Tue Mar 31 2020 06:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76200 * 103.00061 * 2 1 4 4 C 1.39133 * 119.94902 * 179.97438 * 3 2 1 5 5 C 1.37804 * 120.09764 * 180.02562 * 4 3 2 6 6 C 1.39424 * 119.97919 * 359.97438 * 5 4 3 7 7 C 1.48320 * 120.05089 * 179.97438 * 6 5 4 8 8 C 1.39776 * 120.00164 * 130.02265 * 7 6 5 9 9 C 1.38385 * 120.37341 * 180.02562 * 8 7 6 10 10 C 1.37726 * 120.38048 * 359.95973 * 9 8 7 11 11 C 1.40766 * 119.99831 * 0.02562 * 10 9 8 12 12 C 1.41426 * 120.18228 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00052 * 204.51570 * 12 11 10 14 14 C 1.39927 * 120.00075 * 24.51700 * 12 11 10 15 15 N 1.30834 * 120.00110 * 17.90171 * 14 12 11 16 16 Si 1.86801 * 119.99810 * 197.90375 * 14 12 11 17 17 H 1.48503 * 109.47027 * 89.99880 * 16 14 12 18 18 H 1.48499 * 109.47004 * 209.99848 * 16 14 12 19 19 H 1.48496 * 109.47515 * 329.99785 * 16 14 12 20 20 C 1.38770 * 120.00606 * 309.75126 * 7 6 5 21 21 C 1.39627 * 119.89743 * 0.02562 * 6 5 4 22 22 F 1.35093 * 120.04987 * 179.97438 * 21 6 5 23 23 C 1.38083 * 119.90514 * 0.25201 * 21 6 5 24 24 H 1.09006 * 109.46935 * 59.99455 * 1 2 3 25 25 H 1.08996 * 109.47662 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47178 * 300.00268 * 1 2 3 27 27 H 1.07997 * 119.95345 * 0.02736 * 4 3 2 28 28 H 1.07991 * 120.01105 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.81700 * 0.02562 * 8 7 6 30 30 H 1.08004 * 119.80756 * 179.97438 * 9 8 7 31 31 H 1.08001 * 119.99793 * 180.02562 * 10 9 8 32 32 H 0.96997 * 119.99826 * 180.02562 * 15 14 12 33 33 H 1.08004 * 120.18935 * 359.97387 * 20 7 6 34 34 H 1.08002 * 119.99310 * 179.74594 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5413 2.1224 0.0005 5 6 3.8548 3.4643 0.0011 6 6 2.8372 4.4175 0.0005 7 6 3.1728 5.8622 0.0017 8 6 2.5737 6.7197 -0.9254 9 6 2.8816 8.0688 -0.9316 10 6 3.7812 8.5821 -0.0238 11 6 4.3937 7.7329 0.9171 12 6 5.3184 8.2558 1.8507 13 1 6.0659 7.6114 2.2892 14 6 5.2648 9.6080 2.2064 15 7 4.1830 10.3046 1.9688 16 14 6.7378 10.4188 3.0203 17 1 7.6305 10.9846 1.9771 18 1 6.2713 11.5073 3.9162 19 1 7.4825 9.4090 3.8146 20 6 4.0774 6.3638 0.9268 21 6 1.5018 4.0099 0.0000 22 9 0.5134 4.9308 0.0000 23 6 1.1928 2.6641 0.0053 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 4.3298 1.3845 0.0005 28 1 4.8882 3.7776 0.0019 29 1 1.8664 6.3271 -1.6411 30 1 2.4135 8.7230 -1.6523 31 1 4.0166 9.6361 -0.0339 32 1 4.1460 11.2420 2.2151 33 1 4.5386 5.7050 1.6477 34 1 0.1603 2.3472 0.0090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242813703.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:05 Heat of formation + Delta-G solvation = -22.992610 kcal Electronic energy + Delta-G solvation = -19145.450555 eV Core-core repulsion = 16047.494421 eV Total energy + Delta-G solvation = -3097.956134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.92221 -40.26783 -38.93132 -35.69433 -33.40977 -31.99507 -31.70568 -29.97264 -29.37712 -27.22954 -24.61005 -23.77921 -22.38593 -21.98801 -19.44450 -18.99136 -17.44749 -17.41670 -16.85473 -16.77234 -16.68381 -16.35668 -15.51516 -15.20776 -15.03555 -14.65113 -14.64862 -14.29980 -14.14980 -13.61428 -13.50337 -13.40878 -13.16915 -12.92074 -12.74645 -12.58837 -12.38164 -12.11402 -11.59186 -11.38904 -11.29170 -11.05641 -10.72861 -9.92935 -9.46095 -9.26341 -8.66147 -8.29280 -6.37704 -0.18824 0.12463 0.49337 0.94769 1.05017 1.38547 1.38844 1.51983 1.52128 2.20575 2.44183 2.72222 3.28121 3.59475 3.75353 3.75970 4.00927 4.22332 4.25670 4.31488 4.43678 4.47172 4.59788 4.83108 4.86932 4.97242 4.98094 5.06757 5.11903 5.18562 5.31167 5.45076 5.61236 5.75624 5.91955 6.03891 6.10455 6.30749 6.64065 6.90731 6.97260 8.32281 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.030157 B = 0.003603 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.257990 B = 7770.499496 C = 8308.991058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.109 6.109 3 C -0.071 4.071 4 C -0.103 4.103 5 C -0.068 4.068 6 C -0.080 4.080 7 C -0.039 4.039 8 C -0.218 4.218 9 C -0.108 4.108 10 C -0.183 4.183 11 C 0.080 3.920 12 C -0.500 4.500 13 H 0.078 0.922 14 C 0.035 3.965 15 N -0.827 5.827 16 Si 0.984 3.016 17 H -0.261 1.261 18 H -0.269 1.269 19 H -0.257 1.257 20 C -0.215 4.215 21 C 0.102 3.898 22 F -0.145 7.145 23 C -0.165 4.165 24 H 0.092 0.908 25 H 0.133 0.867 26 H 0.090 0.910 27 H 0.159 0.841 28 H 0.144 0.856 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.289 0.711 33 H 0.101 0.899 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.356 -16.239 -3.104 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.133 5.867 3 C -0.184 4.184 4 C -0.127 4.127 5 C -0.087 4.087 6 C -0.084 4.084 7 C -0.039 4.039 8 C -0.238 4.238 9 C -0.127 4.127 10 C -0.202 4.202 11 C 0.078 3.922 12 C -0.529 4.529 13 H 0.096 0.904 14 C -0.180 4.180 15 N -0.453 5.453 16 Si 0.805 3.195 17 H -0.186 1.186 18 H -0.194 1.194 19 H -0.181 1.181 20 C -0.234 4.234 21 C 0.081 3.919 22 F -0.123 7.123 23 C -0.190 4.190 24 H 0.111 0.889 25 H 0.151 0.849 26 H 0.109 0.891 27 H 0.177 0.823 28 H 0.162 0.838 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.887 -17.062 -3.062 17.765 hybrid contribution -0.641 2.268 0.358 2.383 sum -4.528 -14.794 -2.704 15.706 Atomic orbital electron populations 1.23862 0.92163 1.08864 1.06535 1.85406 1.09345 0.99789 1.92142 1.21760 0.95863 0.97854 1.02931 1.20985 0.95103 0.95569 1.01008 1.21223 0.99086 0.91640 0.96796 1.19209 0.92276 0.93736 1.03152 1.18431 0.97859 0.90891 0.96695 1.20622 1.06159 0.93497 1.03480 1.20882 0.98159 0.95029 0.98600 1.21389 1.01959 0.99824 0.97030 1.17884 0.91296 0.91640 0.91357 1.19830 1.14818 0.95409 1.22840 0.90356 1.26784 0.98922 0.97446 0.94836 1.69884 1.27477 1.10157 1.37760 0.85171 0.77738 0.78099 0.78507 1.18595 1.19353 1.18074 1.21144 1.04079 0.95804 1.02408 1.17802 0.84263 0.86474 1.03318 1.91466 1.60557 1.66413 1.93879 1.21146 1.00969 0.89940 1.06900 0.88942 0.84920 0.89100 0.82315 0.83848 0.87844 0.86927 0.87748 0.90087 0.88100 0.82570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.14 113.37 1.04 -0.68 16 2 S -0.11 -2.01 22.56 -56.49 -1.27 -3.28 16 3 C -0.07 -1.77 6.12 22.67 0.14 -1.63 16 4 C -0.10 -2.64 9.77 22.38 0.22 -2.42 16 5 C -0.07 -2.13 9.49 22.45 0.21 -1.91 16 6 C -0.08 -3.06 5.48 -19.97 -0.11 -3.17 16 7 C -0.04 -1.78 5.31 -20.09 -0.11 -1.89 16 8 C -0.22 -10.16 8.87 22.68 0.20 -9.95 16 9 C -0.11 -5.27 10.01 22.18 0.22 -5.05 16 10 C -0.18 -9.88 8.69 22.77 0.20 -9.68 16 11 C 0.08 4.44 5.57 -21.32 -0.12 4.32 16 12 C -0.50 -27.22 9.05 23.46 0.21 -27.01 16 13 H 0.08 4.09 7.91 -2.91 -0.02 4.06 16 14 C 0.03 1.78 5.14 85.25 0.44 2.21 16 15 N -0.83 -43.92 10.96 21.82 0.24 -43.68 16 16 Si 0.98 38.38 29.60 68.60 2.03 40.41 16 17 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 18 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 19 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 20 C -0.21 -10.82 9.24 22.95 0.21 -10.61 16 21 C 0.10 3.59 7.15 22.57 0.16 3.76 16 22 F -0.14 -5.58 15.87 44.97 0.71 -4.87 16 23 C -0.17 -4.48 9.33 22.42 0.21 -4.28 16 24 H 0.09 1.02 7.75 -2.39 -0.02 1.00 16 25 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.09 1.04 7.73 -2.39 -0.02 1.02 16 27 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 28 H 0.14 4.28 8.04 -2.92 -0.02 4.25 16 29 H 0.10 4.41 7.76 -2.91 -0.02 4.39 16 30 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 31 H 0.10 5.85 6.15 -2.91 -0.02 5.83 16 32 H 0.29 13.81 8.30 -92.71 -0.77 13.05 16 33 H 0.10 4.81 8.04 -2.91 -0.02 4.78 16 34 H 0.16 3.35 5.86 -2.91 -0.02 3.33 16 Total: -1.00 -62.26 310.44 5.96 -56.30 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 1.12 Total: 23.12 kcal Atomic # 6 Polarization: -71.12 SS G_CDS: 3.13 Total: -67.99 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.24 Total: -43.68 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.71 Total: -4.87 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -1.27 Total: -3.28 kcal Total: -62.26 5.96 -56.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242813703.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.308 kcal (2) G-P(sol) polarization free energy of solvation -62.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds