Wall clock time and date at job start Tue Mar 31 2020 06:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76201 * 102.99916 * 2 1 4 4 C 1.38907 * 120.17039 * 0.29986 * 3 2 1 5 5 C 1.38046 * 120.05607 * 180.27751 * 4 3 2 6 6 C 1.38605 * 120.40472 * 359.69558 * 5 4 3 7 7 C 1.37845 * 120.34196 * 0.02562 * 6 5 4 8 8 C 1.39612 * 119.93332 * 0.02562 * 7 6 5 9 9 C 1.47766 * 120.19719 * 179.97438 * 8 7 6 10 10 C 1.40132 * 119.87268 * 310.00337 * 9 8 7 11 11 C 1.36133 * 120.17178 * 179.97438 * 10 9 8 12 12 C 1.40978 * 119.91148 * 0.27290 * 11 10 9 13 13 C 1.40895 * 120.12739 * 179.72659 * 12 11 10 14 14 H 1.08002 * 119.99897 * 204.84781 * 13 12 11 15 15 C 1.39944 * 120.00183 * 24.84566 * 13 12 11 16 16 N 1.30859 * 119.99785 * 17.88897 * 15 13 12 17 17 Si 1.86796 * 120.00030 * 197.88544 * 15 13 12 18 18 H 1.48509 * 109.46816 * 90.00397 * 17 15 13 19 19 H 1.48502 * 109.47134 * 210.00051 * 17 15 13 20 20 H 1.48493 * 109.47402 * 330.00699 * 17 15 13 21 21 C 1.41213 * 119.74549 * 359.51974 * 12 11 10 22 22 F 1.35100 * 120.08504 * 180.22928 * 21 12 11 23 23 C 1.36494 * 119.82404 * 0.43396 * 21 12 11 24 24 H 1.09004 * 109.46903 * 60.00284 * 1 2 3 25 25 H 1.08996 * 109.46976 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47497 * 300.00109 * 1 2 3 27 27 H 1.08000 * 119.96879 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.79885 * 179.71650 * 5 4 3 29 29 H 1.07998 * 119.82597 * 180.02562 * 6 5 4 30 30 H 1.08001 * 120.03350 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.91584 * 359.97438 * 10 9 8 32 32 H 1.08006 * 120.04883 * 180.02562 * 11 10 9 33 33 H 0.97000 * 119.99565 * 179.97438 * 16 15 13 34 34 H 1.08001 * 119.95097 * 179.79127 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1973 2.6672 0.0063 5 6 1.5104 4.0117 0.0005 6 6 2.8338 4.4236 -0.0053 7 6 3.8523 3.4948 -0.0058 8 6 3.5517 2.1314 -0.0010 9 6 4.6389 1.1306 -0.0022 10 6 5.6782 1.2301 -0.9369 11 6 6.6831 0.3118 -0.9430 12 6 6.6752 -0.7453 -0.0103 13 6 7.7100 -1.7015 -0.0163 14 1 7.5338 -2.6903 0.3807 15 6 8.9660 -1.3701 -0.5368 16 7 9.2994 -0.1142 -0.6917 17 14 10.1667 -2.7204 -1.0104 18 1 9.9531 -3.0968 -2.4311 19 1 11.5574 -2.2313 -0.8317 20 1 9.9440 -3.9066 -0.1454 21 6 5.6285 -0.8396 0.9329 22 9 5.6165 -1.8471 1.8328 23 6 4.6267 0.0875 0.9302 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.1637 2.3539 0.0108 28 1 0.7194 4.7470 0.0008 29 1 3.0682 5.4779 -0.0094 30 1 4.8817 3.8213 -0.0107 31 1 5.6820 2.0374 -1.6543 32 1 7.4834 0.3906 -1.6641 33 1 10.1702 0.1155 -1.0521 34 1 3.8234 0.0154 1.6485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242945069.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:52 Heat of formation + Delta-G solvation = -12.754121 kcal Electronic energy + Delta-G solvation = -19464.184389 eV Core-core repulsion = 16366.672229 eV Total energy + Delta-G solvation = -3097.512160 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.22615 -38.87428 -37.12991 -34.09493 -31.54741 -30.99798 -29.30243 -28.83755 -28.55194 -25.32375 -22.59560 -22.30224 -20.90719 -20.16790 -17.54149 -17.35687 -16.25179 -15.57199 -15.03003 -14.94585 -14.42652 -14.22281 -14.03845 -13.96844 -13.81255 -13.64099 -12.94630 -12.71765 -12.53159 -12.27202 -12.01544 -11.83849 -11.44570 -11.23564 -11.06714 -10.94426 -10.75087 -10.44806 -9.95873 -9.91184 -9.55680 -9.40781 -9.32836 -8.55831 -7.58238 -7.41686 -6.97992 -6.89044 -4.50278 1.49807 1.62517 1.87703 2.59086 2.74041 2.96078 2.98716 3.03272 3.07434 3.79533 4.04281 4.43886 5.10579 5.14926 5.16434 5.21029 5.32774 5.45855 5.67574 5.69436 5.80939 5.98388 6.07171 6.22513 6.25110 6.42691 6.58854 6.71953 6.81157 6.89868 6.98780 7.11276 7.23381 7.45338 7.56240 7.86810 7.92202 7.99360 8.41182 8.57261 8.73771 9.93275 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.004740 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.334192 B = 5905.220735 C = 6693.247180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 S -0.080 6.080 3 C -0.099 4.099 4 C -0.132 4.132 5 C -0.129 4.129 6 C -0.122 4.122 7 C -0.109 4.109 8 C 0.033 3.967 9 C -0.188 4.188 10 C -0.076 4.076 11 C -0.155 4.155 12 C 0.095 3.905 13 C -0.439 4.439 14 H 0.086 0.914 15 C 0.075 3.925 16 N -0.777 5.777 17 Si 0.915 3.085 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.029 4.029 22 F -0.163 7.163 23 C -0.084 4.084 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.095 0.905 32 H 0.126 0.874 33 H 0.286 0.714 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.115 4.661 -1.010 11.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.336 4.336 2 S 0.164 5.836 3 C -0.211 4.211 4 C -0.156 4.156 5 C -0.149 4.149 6 C -0.143 4.143 7 C -0.129 4.129 8 C 0.027 3.973 9 C -0.190 4.190 10 C -0.095 4.095 11 C -0.174 4.174 12 C 0.092 3.908 13 C -0.467 4.467 14 H 0.105 0.895 15 C -0.146 4.146 16 N -0.400 5.400 17 Si 0.739 3.261 18 H -0.189 1.189 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.049 4.049 22 F -0.142 7.142 23 C -0.104 4.104 24 H 0.095 0.905 25 H 0.120 0.880 26 H 0.096 0.904 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.144 0.856 31 H 0.113 0.887 32 H 0.144 0.856 33 H 0.097 0.903 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.294 3.684 -1.045 10.052 hybrid contribution -0.324 0.581 -0.048 0.667 sum -9.617 4.265 -1.093 10.577 Atomic orbital electron populations 1.23776 0.98737 1.06314 1.04745 1.86258 1.02067 1.02999 1.92252 1.21998 0.96013 0.96422 1.06715 1.20973 0.97558 0.93233 1.03805 1.20865 0.96351 0.94938 1.02762 1.21022 0.92774 0.99118 1.01377 1.21293 0.99341 0.91804 1.00498 1.18579 0.90350 0.93005 0.95329 1.17699 0.98095 0.99102 1.04078 1.20460 0.93527 0.98286 0.97225 1.20794 0.99096 0.96969 1.00589 1.17723 0.90837 0.93111 0.89150 1.19621 0.94525 0.99516 1.33046 0.89548 1.26009 0.99324 0.96469 0.92766 1.69828 1.21469 1.18383 1.30325 0.86173 0.78491 0.81289 0.80140 1.18914 1.20011 1.18259 1.17348 1.01841 0.91228 0.94504 1.91281 1.96936 1.59515 1.66498 1.20225 0.96928 0.94159 0.99105 0.90510 0.88028 0.90443 0.86621 0.86668 0.86471 0.85630 0.88688 0.85635 0.90290 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 9.15 101.05 0.92 -1.01 16 2 S -0.08 -1.34 19.36 -107.50 -2.08 -3.42 16 3 C -0.10 -1.73 6.10 -38.52 -0.24 -1.97 16 4 C -0.13 -1.94 9.36 -39.40 -0.37 -2.31 16 5 C -0.13 -1.75 10.03 -39.52 -0.40 -2.15 16 6 C -0.12 -1.73 10.03 -39.59 -0.40 -2.13 16 7 C -0.11 -1.84 9.50 -39.21 -0.37 -2.22 16 8 C 0.03 0.63 5.48 -104.68 -0.57 0.05 16 9 C -0.19 -4.13 5.09 -104.67 -0.53 -4.67 16 10 C -0.08 -1.72 9.43 -39.63 -0.37 -2.10 16 11 C -0.16 -3.86 8.62 -39.30 -0.34 -4.20 16 12 C 0.10 2.52 5.58 -106.72 -0.60 1.92 16 13 C -0.44 -11.49 8.75 -37.94 -0.33 -11.82 16 14 H 0.09 2.24 7.73 -52.49 -0.41 1.83 16 15 C 0.07 1.80 5.13 -17.33 -0.09 1.71 16 16 N -0.78 -19.01 10.97 55.55 0.61 -18.40 16 17 Si 0.92 17.96 29.60 -169.99 -5.03 12.93 16 18 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 19 H -0.28 -5.24 7.11 56.52 0.40 -4.83 16 20 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 21 C -0.03 -0.74 7.25 -39.08 -0.28 -1.03 16 22 F -0.16 -4.16 16.70 2.25 0.04 -4.13 16 23 C -0.08 -1.95 7.98 -39.59 -0.32 -2.27 16 24 H 0.08 0.81 7.77 -51.92 -0.40 0.41 16 25 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.08 0.81 7.74 -51.92 -0.40 0.41 16 27 H 0.12 1.42 5.89 -52.49 -0.31 1.11 16 28 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.13 2.03 8.04 -52.49 -0.42 1.61 16 31 H 0.09 1.93 8.03 -52.49 -0.42 1.51 16 32 H 0.13 3.16 6.17 -52.48 -0.32 2.84 16 33 H 0.29 6.29 8.30 -40.82 -0.34 5.95 16 34 H 0.11 2.40 7.06 -52.49 -0.37 2.03 16 LS Contribution 306.41 15.07 4.62 4.62 Total: -1.00 -27.22 306.41 -9.59 -36.80 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -3.46 Total: 5.77 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: -4.28 Total: -34.18 kcal Atomic # 7 Polarization: -19.01 SS G_CDS: 0.61 Total: -18.40 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.04 Total: -4.13 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.08 Total: -3.42 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.22 -9.59 -36.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242945069.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.050 kcal (2) G-P(sol) polarization free energy of solvation -27.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds