Wall clock time and date at job start Tue Mar 31 2020 06:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76201 * 102.99916 * 2 1 4 4 C 1.38907 * 120.17039 * 0.29986 * 3 2 1 5 5 C 1.38046 * 120.05607 * 180.27751 * 4 3 2 6 6 C 1.38605 * 120.40472 * 359.69558 * 5 4 3 7 7 C 1.37845 * 120.34196 * 0.02562 * 6 5 4 8 8 C 1.39612 * 119.93332 * 0.02562 * 7 6 5 9 9 C 1.47766 * 120.19719 * 179.97438 * 8 7 6 10 10 C 1.40132 * 119.87268 * 310.00337 * 9 8 7 11 11 C 1.36133 * 120.17178 * 179.97438 * 10 9 8 12 12 C 1.40978 * 119.91148 * 0.27290 * 11 10 9 13 13 C 1.40895 * 120.12739 * 179.72659 * 12 11 10 14 14 H 1.08002 * 119.99897 * 204.84781 * 13 12 11 15 15 C 1.39944 * 120.00183 * 24.84566 * 13 12 11 16 16 N 1.30859 * 119.99785 * 17.88897 * 15 13 12 17 17 Si 1.86796 * 120.00030 * 197.88544 * 15 13 12 18 18 H 1.48509 * 109.46816 * 90.00397 * 17 15 13 19 19 H 1.48502 * 109.47134 * 210.00051 * 17 15 13 20 20 H 1.48493 * 109.47402 * 330.00699 * 17 15 13 21 21 C 1.41213 * 119.74549 * 359.51974 * 12 11 10 22 22 F 1.35100 * 120.08504 * 180.22928 * 21 12 11 23 23 C 1.36494 * 119.82404 * 0.43396 * 21 12 11 24 24 H 1.09004 * 109.46903 * 60.00284 * 1 2 3 25 25 H 1.08996 * 109.46976 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47497 * 300.00109 * 1 2 3 27 27 H 1.08000 * 119.96879 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.79885 * 179.71650 * 5 4 3 29 29 H 1.07998 * 119.82597 * 180.02562 * 6 5 4 30 30 H 1.08001 * 120.03350 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.91584 * 359.97438 * 10 9 8 32 32 H 1.08006 * 120.04883 * 180.02562 * 11 10 9 33 33 H 0.97000 * 119.99565 * 179.97438 * 16 15 13 34 34 H 1.08001 * 119.95097 * 179.79127 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1973 2.6672 0.0063 5 6 1.5104 4.0117 0.0005 6 6 2.8338 4.4236 -0.0053 7 6 3.8523 3.4948 -0.0058 8 6 3.5517 2.1314 -0.0010 9 6 4.6389 1.1306 -0.0022 10 6 5.6782 1.2301 -0.9369 11 6 6.6831 0.3118 -0.9430 12 6 6.6752 -0.7453 -0.0103 13 6 7.7100 -1.7015 -0.0163 14 1 7.5338 -2.6903 0.3807 15 6 8.9660 -1.3701 -0.5368 16 7 9.2994 -0.1142 -0.6917 17 14 10.1667 -2.7204 -1.0104 18 1 9.9531 -3.0968 -2.4311 19 1 11.5574 -2.2313 -0.8317 20 1 9.9440 -3.9066 -0.1454 21 6 5.6285 -0.8396 0.9329 22 9 5.6165 -1.8471 1.8328 23 6 4.6267 0.0875 0.9302 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.1637 2.3539 0.0108 28 1 0.7194 4.7470 0.0008 29 1 3.0682 5.4779 -0.0094 30 1 4.8817 3.8213 -0.0107 31 1 5.6820 2.0374 -1.6543 32 1 7.4834 0.3906 -1.6641 33 1 10.1702 0.1155 -1.0521 34 1 3.8234 0.0154 1.6485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242945069.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:51 Heat of formation + Delta-G solvation = -24.317208 kcal Electronic energy + Delta-G solvation = -19464.685802 eV Core-core repulsion = 16366.672229 eV Total energy + Delta-G solvation = -3098.013573 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.22468 -40.27340 -38.80518 -35.86953 -33.10276 -32.19619 -31.10854 -30.48115 -29.56946 -27.05398 -24.07692 -23.69644 -22.63068 -21.79833 -19.41370 -18.71468 -17.76395 -17.28490 -16.61795 -16.49967 -16.07481 -15.94644 -15.73166 -15.35393 -14.89701 -14.71707 -14.43614 -14.41694 -13.92504 -13.62396 -13.58806 -13.28683 -13.11275 -12.85157 -12.58899 -12.48432 -12.17471 -11.96881 -11.74909 -11.59289 -11.18587 -10.85467 -10.58945 -9.96132 -9.40674 -9.18747 -8.77469 -8.24080 -6.42959 0.16063 0.40983 0.67161 0.88850 1.00967 1.36318 1.49175 1.50258 1.70519 2.16416 2.55230 2.87346 3.48810 3.86104 4.01210 4.13073 4.24131 4.29941 4.31345 4.36047 4.49631 4.56155 4.58581 4.85142 4.88678 4.97322 5.08854 5.11676 5.21279 5.34289 5.54841 5.56687 5.63782 5.71621 5.97046 6.04951 6.10817 6.11666 6.49537 6.68812 6.83305 8.17373 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.004740 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.334192 B = 5905.220735 C = 6693.247180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.161 6.161 3 C -0.100 4.100 4 C -0.133 4.133 5 C -0.112 4.112 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.012 4.012 9 C -0.167 4.167 10 C -0.080 4.080 11 C -0.167 4.167 12 C 0.066 3.934 13 C -0.483 4.483 14 H 0.073 0.927 15 C 0.040 3.960 16 N -0.805 5.805 17 Si 0.988 3.012 18 H -0.256 1.256 19 H -0.260 1.260 20 H -0.263 1.263 21 C -0.060 4.060 22 F -0.171 7.171 23 C -0.083 4.083 24 H 0.093 0.907 25 H 0.117 0.883 26 H 0.093 0.907 27 H 0.145 0.855 28 H 0.157 0.843 29 H 0.152 0.848 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.296 0.704 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.423 6.823 -1.591 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.083 5.917 3 C -0.213 4.213 4 C -0.157 4.157 5 C -0.132 4.132 6 C -0.139 4.139 7 C -0.137 4.137 8 C -0.017 4.017 9 C -0.169 4.169 10 C -0.099 4.099 11 C -0.187 4.187 12 C 0.063 3.937 13 C -0.511 4.511 14 H 0.091 0.909 15 C -0.178 4.178 16 N -0.429 5.429 17 Si 0.807 3.193 18 H -0.180 1.180 19 H -0.184 1.184 20 H -0.187 1.187 21 C -0.080 4.080 22 F -0.151 7.151 23 C -0.103 4.103 24 H 0.111 0.889 25 H 0.136 0.864 26 H 0.112 0.888 27 H 0.162 0.838 28 H 0.175 0.825 29 H 0.169 0.831 30 H 0.142 0.858 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.108 0.892 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.613 5.868 -1.622 13.112 hybrid contribution 0.064 0.131 0.156 0.213 sum -11.549 5.999 -1.466 13.097 Atomic orbital electron populations 1.23799 0.93133 1.07946 1.06291 1.86495 1.08263 1.04491 1.92486 1.22045 0.95962 0.96510 1.06750 1.21374 0.98243 0.93326 1.02758 1.21409 0.97153 0.95211 0.99405 1.21409 0.92425 1.00288 0.99749 1.21405 1.00381 0.91320 1.00574 1.18554 0.90351 0.93320 0.99485 1.18035 0.98179 0.98678 1.01969 1.20719 0.93176 0.98256 0.97725 1.20786 0.99799 0.97552 1.00542 1.18025 0.91582 0.94113 0.89993 1.19724 0.96099 0.99231 1.36002 0.90912 1.26795 1.00221 0.98850 0.91903 1.69838 1.22513 1.19923 1.30660 0.85119 0.76493 0.77867 0.79803 1.18035 1.18390 1.18674 1.17679 1.03072 0.92159 0.95136 1.91234 1.97060 1.60015 1.66749 1.20351 0.96374 0.94050 0.99540 0.88853 0.86435 0.88792 0.83770 0.82493 0.83050 0.85823 0.86487 0.86488 0.89246 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.15 113.37 1.04 -1.84 16 2 S -0.16 -5.33 19.36 -56.49 -1.09 -6.42 16 3 C -0.10 -3.33 6.10 22.96 0.14 -3.19 16 4 C -0.13 -3.37 9.36 22.38 0.21 -3.16 16 5 C -0.11 -2.43 10.03 22.31 0.22 -2.21 16 6 C -0.12 -2.85 10.03 22.26 0.22 -2.63 16 7 C -0.12 -3.72 9.50 22.51 0.21 -3.50 16 8 C -0.01 -0.44 5.48 -19.90 -0.11 -0.55 16 9 C -0.17 -7.51 5.09 -19.89 -0.10 -7.62 16 10 C -0.08 -3.74 9.43 22.24 0.21 -3.53 16 11 C -0.17 -8.76 8.62 22.45 0.19 -8.57 16 12 C 0.07 3.71 5.58 -21.23 -0.12 3.59 16 13 C -0.48 -26.87 8.75 23.33 0.20 -26.66 16 14 H 0.07 4.07 7.73 -2.91 -0.02 4.04 16 15 C 0.04 1.99 5.13 85.25 0.44 2.43 16 16 N -0.81 -40.78 10.97 21.83 0.24 -40.54 16 17 Si 0.99 37.77 29.60 68.60 2.03 39.80 16 18 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 19 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 20 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 21 C -0.06 -3.29 7.25 22.59 0.16 -3.12 16 22 F -0.17 -9.33 16.70 44.97 0.75 -8.58 16 23 C -0.08 -4.05 7.98 22.27 0.18 -3.87 16 24 H 0.09 1.59 7.77 -2.39 -0.02 1.57 16 25 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.09 1.60 7.74 -2.39 -0.02 1.58 16 27 H 0.14 2.77 5.89 -2.91 -0.02 2.76 16 28 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 29 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 30 H 0.12 3.86 8.04 -2.91 -0.02 3.84 16 31 H 0.12 4.81 8.03 -2.91 -0.02 4.78 16 32 H 0.12 6.22 6.17 -2.91 -0.02 6.20 16 33 H 0.30 13.29 8.30 -92.71 -0.77 12.52 16 34 H 0.12 5.32 7.06 -2.91 -0.02 5.29 16 Total: -1.00 -63.56 306.41 6.16 -57.41 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 1.12 Total: 22.77 kcal Atomic # 6 Polarization: -67.54 SS G_CDS: 3.11 Total: -64.43 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.24 Total: -40.54 kcal Atomic # 9 Polarization: -9.33 SS G_CDS: 0.75 Total: -8.58 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Atomic # 16 Polarization: -5.33 SS G_CDS: -1.09 Total: -6.42 kcal Total: -63.56 6.16 -57.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242945069.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.090 kcal (2) G-P(sol) polarization free energy of solvation -63.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds