Wall clock time and date at job start Tue Mar 31 2020 06:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76205 * 102.99809 * 2 1 4 4 C 1.38890 * 120.17159 * 359.97438 * 3 2 1 5 5 C 1.38054 * 120.05641 * 180.02562 * 4 3 2 6 6 C 1.38608 * 120.41435 * 0.02562 * 5 4 3 7 7 C 1.37845 * 120.34195 * 359.69256 * 6 5 4 8 8 C 1.39633 * 119.93199 * 0.58151 * 7 6 5 9 9 C 1.47714 * 120.20188 * 179.72267 * 8 7 6 10 10 C 1.40061 * 119.90733 * 64.97101 * 9 8 7 11 11 C 1.36163 * 120.12956 * 180.30257 * 10 9 8 12 12 C 1.41016 * 119.93651 * 359.47035 * 11 10 9 13 13 C 1.40952 * 120.09135 * 180.27569 * 12 11 10 14 14 H 1.08001 * 120.00299 * 204.74778 * 13 12 11 15 15 C 1.39947 * 120.00163 * 24.75539 * 13 12 11 16 16 N 1.30836 * 119.99695 * 17.98745 * 15 13 12 17 17 Si 1.86801 * 120.00056 * 197.99082 * 15 13 12 18 18 H 1.48504 * 109.46874 * 59.99748 * 17 15 13 19 19 H 1.48491 * 109.47096 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46902 * 300.00096 * 17 15 13 21 21 C 1.40900 * 119.81321 * 0.25748 * 12 11 10 22 22 C 1.36410 * 119.86751 * 0.02562 * 21 12 11 23 23 F 1.35104 * 119.96672 * 180.02562 * 22 21 12 24 24 H 1.08994 * 109.47007 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46802 * 300.00028 * 1 2 3 26 26 H 1.08997 * 109.46883 * 59.99956 * 1 2 3 27 27 H 1.07998 * 119.97445 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.79825 * 179.97438 * 5 4 3 29 29 H 1.07993 * 119.83018 * 179.97438 * 6 5 4 30 30 H 1.07995 * 120.03334 * 180.28323 * 7 6 5 31 31 H 1.07998 * 119.93192 * 0.02570 * 10 9 8 32 32 H 1.08004 * 120.03248 * 179.75518 * 11 10 9 33 33 H 0.97003 * 119.99664 * 179.97438 * 16 15 13 34 34 H 1.08004 * 120.06762 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1974 2.6671 -0.0005 5 6 1.5106 4.0117 -0.0011 6 6 2.8340 4.4239 -0.0016 7 6 3.8526 3.4952 0.0048 8 6 3.5522 2.1315 -0.0005 9 6 4.6391 1.1312 0.0001 10 6 5.4970 1.0329 1.1028 11 6 6.5042 0.1166 1.1056 12 6 6.6770 -0.7426 0.0008 13 6 7.7149 -1.6962 0.0027 14 1 8.1107 -2.0656 -0.9319 15 6 8.2326 -2.1647 1.2156 16 7 7.5517 -2.0076 2.3217 17 14 9.8959 -3.0140 1.2553 18 1 10.9392 -2.0829 0.7556 19 1 10.2152 -3.4121 2.6498 20 1 9.8557 -4.2217 0.3921 21 6 5.8089 -0.6453 -1.1047 22 6 4.8061 0.2794 -1.1017 23 9 3.9722 0.3740 -2.1605 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.1638 2.3540 -0.0005 28 1 0.7196 4.7470 -0.0019 29 1 3.0682 5.4781 -0.0024 30 1 4.8819 3.8219 0.0089 31 1 5.3622 1.6881 1.9507 32 1 7.1673 0.0447 1.9551 33 1 7.9103 -2.3326 3.1623 34 1 5.9378 -1.3010 -1.9532 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242945154.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:53 Heat of formation + Delta-G solvation = -9.560520 kcal Electronic energy + Delta-G solvation = -19629.675426 eV Core-core repulsion = 16532.301751 eV Total energy + Delta-G solvation = -3097.373675 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.65145 -38.73199 -37.18531 -33.93816 -31.66004 -30.93325 -29.32069 -28.62210 -28.50584 -25.39067 -22.41075 -22.23757 -20.96540 -20.27798 -17.69958 -17.28198 -16.01220 -15.55795 -15.07001 -15.02198 -14.64510 -14.45939 -14.12366 -13.82640 -13.64786 -13.55252 -13.10272 -12.50547 -12.44430 -12.26235 -12.12799 -11.91146 -11.46927 -11.20944 -11.03379 -10.82616 -10.60753 -10.52565 -10.11943 -9.75994 -9.53348 -9.33672 -9.24628 -8.48865 -7.63746 -7.29546 -6.97833 -6.85469 -4.55399 1.58768 1.68643 1.94621 2.57843 2.84888 2.93680 2.98038 2.99996 3.08224 3.79025 4.07257 4.40680 5.14323 5.19446 5.20875 5.24272 5.38539 5.49548 5.65819 5.72578 5.73972 5.86499 6.14323 6.19837 6.36035 6.58345 6.75688 6.77828 6.83271 6.91863 6.95593 7.07888 7.26556 7.49848 7.59007 7.86686 7.90044 8.07571 8.44170 8.66684 8.75679 9.95851 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.024275 B = 0.004723 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.154656 B = 5926.750076 C = 6306.203240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 S -0.076 6.076 3 C -0.085 4.085 4 C -0.137 4.137 5 C -0.122 4.122 6 C -0.129 4.129 7 C -0.102 4.102 8 C 0.029 3.971 9 C -0.243 4.243 10 C -0.050 4.050 11 C -0.178 4.178 12 C 0.139 3.861 13 C -0.446 4.446 14 H 0.083 0.917 15 C 0.076 3.924 16 N -0.775 5.775 17 Si 0.913 3.087 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.263 1.263 21 C -0.268 4.268 22 C 0.155 3.845 23 F -0.158 7.158 24 H 0.102 0.898 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.096 0.904 32 H 0.123 0.877 33 H 0.286 0.714 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.767 5.951 -0.761 9.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.332 4.332 2 S 0.168 5.832 3 C -0.198 4.198 4 C -0.162 4.162 5 C -0.142 4.142 6 C -0.149 4.149 7 C -0.122 4.122 8 C 0.024 3.976 9 C -0.246 4.246 10 C -0.069 4.069 11 C -0.197 4.197 12 C 0.135 3.865 13 C -0.474 4.474 14 H 0.101 0.899 15 C -0.145 4.145 16 N -0.399 5.399 17 Si 0.737 3.263 18 H -0.185 1.185 19 H -0.201 1.201 20 H -0.187 1.187 21 C -0.289 4.289 22 C 0.136 3.864 23 F -0.137 7.137 24 H 0.120 0.880 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.143 0.857 31 H 0.114 0.886 32 H 0.140 0.860 33 H 0.097 0.903 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.186 4.781 -0.532 8.647 hybrid contribution -0.390 0.728 -0.032 0.827 sum -7.576 5.509 -0.564 9.384 Atomic orbital electron populations 1.23732 0.98293 1.06380 1.04748 1.86231 1.02214 1.02939 1.91801 1.22112 0.96109 0.96506 1.05087 1.20981 0.97589 0.93256 1.04339 1.20880 0.96352 0.94923 1.02056 1.21005 0.92790 0.99066 1.02063 1.21314 0.99228 0.91838 0.99838 1.18440 0.90298 0.92898 0.95976 1.17854 1.03834 1.04797 0.98098 1.20230 0.94158 0.97665 0.94844 1.20999 1.00448 0.97201 1.01038 1.17430 0.89392 0.89893 0.89746 1.19609 1.14774 1.19485 0.93557 0.89854 1.26019 0.98621 0.94904 0.94934 1.69830 1.35750 1.34108 1.00180 0.86272 0.81546 0.80147 0.78347 1.18530 1.20098 1.18732 1.20589 1.00330 1.04594 1.03367 1.17153 0.89531 0.96447 0.83319 1.91366 1.71045 1.95712 1.55568 0.87954 0.90451 0.90429 0.86602 0.86633 0.86473 0.85745 0.88569 0.85953 0.90280 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.15 101.05 0.92 -1.13 16 2 S -0.08 -1.40 20.14 -107.50 -2.16 -3.57 16 3 C -0.09 -1.60 5.97 -38.51 -0.23 -1.83 16 4 C -0.14 -2.15 9.36 -39.41 -0.37 -2.52 16 5 C -0.12 -1.74 10.03 -39.51 -0.40 -2.13 16 6 C -0.13 -1.89 10.03 -39.59 -0.40 -2.29 16 7 C -0.10 -1.79 9.74 -39.20 -0.38 -2.17 16 8 C 0.03 0.59 5.01 -104.67 -0.52 0.07 16 9 C -0.24 -5.53 4.64 -104.58 -0.49 -6.02 16 10 C -0.05 -1.16 9.66 -39.64 -0.38 -1.54 16 11 C -0.18 -4.43 8.62 -39.28 -0.34 -4.77 16 12 C 0.14 3.58 5.57 -106.81 -0.60 2.98 16 13 C -0.45 -11.27 9.02 -37.91 -0.34 -11.61 16 14 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 15 C 0.08 1.80 5.13 -17.34 -0.09 1.71 16 16 N -0.78 -18.95 10.96 55.55 0.61 -18.34 16 17 Si 0.91 17.56 29.60 -169.99 -5.03 12.53 16 18 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 20 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 21 C -0.27 -6.68 9.70 -39.23 -0.38 -7.06 16 22 C 0.15 3.71 6.33 -39.48 -0.25 3.46 16 23 F -0.16 -3.68 15.92 2.25 0.04 -3.65 16 24 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.08 0.88 7.75 -51.92 -0.40 0.48 16 26 H 0.08 0.90 7.75 -51.93 -0.40 0.49 16 27 H 0.12 1.52 5.89 -52.49 -0.31 1.22 16 28 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 29 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.12 2.04 8.06 -52.49 -0.42 1.61 16 31 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 32 H 0.12 3.09 6.16 -52.48 -0.32 2.77 16 33 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 34 H 0.11 2.50 8.06 -52.48 -0.42 2.08 16 LS Contribution 308.08 15.07 4.64 4.64 Total: -1.00 -27.20 308.08 -9.67 -36.87 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -3.52 Total: 6.36 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: -4.24 Total: -34.85 kcal Atomic # 7 Polarization: -18.95 SS G_CDS: 0.61 Total: -18.34 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.04 Total: -3.65 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.16 Total: -3.57 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.20 -9.67 -36.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242945154.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.311 kcal (2) G-P(sol) polarization free energy of solvation -27.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds