Wall clock time and date at job start Tue Mar 31 2020 06:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76205 * 102.99809 * 2 1 4 4 C 1.38890 * 120.17159 * 359.97438 * 3 2 1 5 5 C 1.38054 * 120.05641 * 180.02562 * 4 3 2 6 6 C 1.38608 * 120.41435 * 0.02562 * 5 4 3 7 7 C 1.37845 * 120.34195 * 359.69256 * 6 5 4 8 8 C 1.39633 * 119.93199 * 0.58151 * 7 6 5 9 9 C 1.47714 * 120.20188 * 179.72267 * 8 7 6 10 10 C 1.40061 * 119.90733 * 64.97101 * 9 8 7 11 11 C 1.36163 * 120.12956 * 180.30257 * 10 9 8 12 12 C 1.41016 * 119.93651 * 359.47035 * 11 10 9 13 13 C 1.40952 * 120.09135 * 180.27569 * 12 11 10 14 14 H 1.08001 * 120.00299 * 204.74778 * 13 12 11 15 15 C 1.39947 * 120.00163 * 24.75539 * 13 12 11 16 16 N 1.30836 * 119.99695 * 17.98745 * 15 13 12 17 17 Si 1.86801 * 120.00056 * 197.99082 * 15 13 12 18 18 H 1.48504 * 109.46874 * 59.99748 * 17 15 13 19 19 H 1.48491 * 109.47096 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46902 * 300.00096 * 17 15 13 21 21 C 1.40900 * 119.81321 * 0.25748 * 12 11 10 22 22 C 1.36410 * 119.86751 * 0.02562 * 21 12 11 23 23 F 1.35104 * 119.96672 * 180.02562 * 22 21 12 24 24 H 1.08994 * 109.47007 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46802 * 300.00028 * 1 2 3 26 26 H 1.08997 * 109.46883 * 59.99956 * 1 2 3 27 27 H 1.07998 * 119.97445 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.79825 * 179.97438 * 5 4 3 29 29 H 1.07993 * 119.83018 * 179.97438 * 6 5 4 30 30 H 1.07995 * 120.03334 * 180.28323 * 7 6 5 31 31 H 1.07998 * 119.93192 * 0.02570 * 10 9 8 32 32 H 1.08004 * 120.03248 * 179.75518 * 11 10 9 33 33 H 0.97003 * 119.99664 * 179.97438 * 16 15 13 34 34 H 1.08004 * 120.06762 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1974 2.6671 -0.0005 5 6 1.5106 4.0117 -0.0011 6 6 2.8340 4.4239 -0.0016 7 6 3.8526 3.4952 0.0048 8 6 3.5522 2.1315 -0.0005 9 6 4.6391 1.1312 0.0001 10 6 5.4970 1.0329 1.1028 11 6 6.5042 0.1166 1.1056 12 6 6.6770 -0.7426 0.0008 13 6 7.7149 -1.6962 0.0027 14 1 8.1107 -2.0656 -0.9319 15 6 8.2326 -2.1647 1.2156 16 7 7.5517 -2.0076 2.3217 17 14 9.8959 -3.0140 1.2553 18 1 10.9392 -2.0829 0.7556 19 1 10.2152 -3.4121 2.6498 20 1 9.8557 -4.2217 0.3921 21 6 5.8089 -0.6453 -1.1047 22 6 4.8061 0.2794 -1.1017 23 9 3.9722 0.3740 -2.1605 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.1638 2.3540 -0.0005 28 1 0.7196 4.7470 -0.0019 29 1 3.0682 5.4781 -0.0024 30 1 4.8819 3.8219 0.0089 31 1 5.3622 1.6881 1.9507 32 1 7.1673 0.0447 1.9551 33 1 7.9103 -2.3326 3.1623 34 1 5.9378 -1.3010 -1.9532 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242945154.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:53 Heat of formation + Delta-G solvation = -20.920891 kcal Electronic energy + Delta-G solvation = -19630.168048 eV Core-core repulsion = 16532.301751 eV Total energy + Delta-G solvation = -3097.866298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.52499 -40.14331 -38.90495 -35.71248 -33.23976 -32.16141 -31.12643 -30.27817 -29.63139 -27.12081 -23.85579 -23.68019 -22.78391 -21.89020 -19.57233 -18.61970 -17.54844 -17.18209 -16.89616 -16.59223 -16.40867 -15.93048 -15.65951 -15.18181 -14.88361 -14.74047 -14.61207 -14.27531 -14.01826 -13.59222 -13.56941 -13.30989 -13.00534 -12.81177 -12.71408 -12.40107 -12.14284 -12.05646 -11.83141 -11.44923 -11.06130 -10.91488 -10.60469 -9.87888 -9.48102 -9.12051 -8.75900 -8.27142 -6.45773 0.25601 0.40823 0.69226 0.85810 0.97265 1.39295 1.50010 1.53559 1.67887 2.17840 2.57674 2.82389 3.54315 3.80289 3.97364 4.00644 4.22271 4.26396 4.27907 4.32995 4.53400 4.57613 4.78183 4.82623 4.89401 4.96709 5.04352 5.12515 5.19206 5.34515 5.53731 5.61710 5.64111 5.72215 5.96075 5.98581 6.10484 6.20632 6.54669 6.78351 6.86050 8.20581 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.024275 B = 0.004723 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.154656 B = 5926.750076 C = 6306.203240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.170 6.170 3 C -0.092 4.092 4 C -0.139 4.139 5 C -0.108 4.108 6 C -0.122 4.122 7 C -0.113 4.113 8 C -0.016 4.016 9 C -0.225 4.225 10 C -0.054 4.054 11 C -0.192 4.192 12 C 0.112 3.888 13 C -0.482 4.482 14 H 0.083 0.917 15 C 0.039 3.961 16 N -0.807 5.807 17 Si 0.988 3.012 18 H -0.257 1.257 19 H -0.264 1.264 20 H -0.259 1.259 21 C -0.288 4.288 22 C 0.145 3.855 23 F -0.157 7.157 24 H 0.118 0.882 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.144 0.856 28 H 0.159 0.841 29 H 0.154 0.846 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.295 0.705 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.495 7.812 -0.400 12.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.073 5.927 3 C -0.205 4.205 4 C -0.163 4.163 5 C -0.128 4.128 6 C -0.142 4.142 7 C -0.132 4.132 8 C -0.022 4.022 9 C -0.228 4.228 10 C -0.072 4.072 11 C -0.212 4.212 12 C 0.110 3.890 13 C -0.509 4.509 14 H 0.101 0.899 15 C -0.179 4.179 16 N -0.431 5.431 17 Si 0.808 3.192 18 H -0.181 1.181 19 H -0.188 1.188 20 H -0.183 1.183 21 C -0.309 4.309 22 C 0.126 3.874 23 F -0.135 7.135 24 H 0.137 0.863 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.162 0.838 28 H 0.177 0.823 29 H 0.172 0.828 30 H 0.144 0.856 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.106 0.894 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.929 6.659 -0.177 11.140 hybrid contribution -0.103 0.303 -0.163 0.360 sum -9.033 6.963 -0.340 11.410 Atomic orbital electron populations 1.23751 0.92403 1.08040 1.06314 1.86462 1.08864 1.05084 1.92269 1.22128 0.96243 0.96256 1.05851 1.21384 0.98189 0.93453 1.03271 1.21428 0.97276 0.95069 0.98998 1.21422 0.92364 1.00334 1.00083 1.21452 1.00458 0.91233 1.00086 1.18495 0.90302 0.93447 0.99916 1.18113 1.03680 1.04269 0.96727 1.20452 0.93758 0.97401 0.95631 1.20992 1.01349 0.98039 1.00800 1.17714 0.90194 0.90779 0.90358 1.19854 1.15935 1.20609 0.94546 0.89921 1.26866 1.01990 0.95114 0.93908 1.69865 1.37398 1.34871 1.00937 0.85159 0.76339 0.78885 0.78852 1.18149 1.18780 1.18310 1.20694 1.01142 1.05495 1.03531 1.17272 0.89369 0.96843 0.83945 1.91348 1.70944 1.95727 1.55529 0.86308 0.88656 0.88853 0.83844 0.82306 0.82788 0.85621 0.86787 0.86846 0.89387 0.87898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.15 113.37 1.04 -2.07 16 2 S -0.17 -6.29 20.14 -56.49 -1.14 -7.43 16 3 C -0.09 -3.35 5.97 22.96 0.14 -3.22 16 4 C -0.14 -3.86 9.36 22.38 0.21 -3.66 16 5 C -0.11 -2.53 10.03 22.31 0.22 -2.31 16 6 C -0.12 -3.09 10.03 22.26 0.22 -2.87 16 7 C -0.11 -3.76 9.74 22.51 0.22 -3.54 16 8 C -0.02 -0.65 5.01 -19.90 -0.10 -0.75 16 9 C -0.23 -10.57 4.64 -19.84 -0.09 -10.66 16 10 C -0.05 -2.58 9.66 22.23 0.21 -2.36 16 11 C -0.19 -10.09 8.62 22.47 0.19 -9.90 16 12 C 0.11 6.15 5.57 -21.28 -0.12 6.03 16 13 C -0.48 -25.53 9.02 23.35 0.21 -25.32 16 14 H 0.08 4.20 7.91 -2.91 -0.02 4.18 16 15 C 0.04 1.90 5.13 85.26 0.44 2.34 16 16 N -0.81 -40.67 10.96 21.83 0.24 -40.43 16 17 Si 0.99 36.42 29.60 68.60 2.03 38.45 16 18 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 19 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 20 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 21 C -0.29 -15.24 9.70 22.49 0.22 -15.02 16 22 C 0.15 7.26 6.33 22.34 0.14 7.40 16 23 F -0.16 -7.56 15.92 44.97 0.72 -6.85 16 24 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.09 1.84 7.75 -2.39 -0.02 1.82 16 26 H 0.09 1.84 7.75 -2.39 -0.02 1.82 16 27 H 0.14 3.11 5.89 -2.91 -0.02 3.09 16 28 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 30 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 31 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 32 H 0.11 6.04 6.16 -2.91 -0.02 6.03 16 33 H 0.30 13.29 8.30 -92.71 -0.77 12.52 16 34 H 0.10 5.26 8.06 -2.91 -0.02 5.24 16 Total: -1.00 -62.84 308.08 6.12 -56.72 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 1.12 Total: 25.43 kcal Atomic # 6 Polarization: -69.05 SS G_CDS: 3.16 Total: -65.89 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.24 Total: -40.43 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 0.72 Total: -6.85 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.03 Total: 38.45 kcal Atomic # 16 Polarization: -6.29 SS G_CDS: -1.14 Total: -7.43 kcal Total: -62.84 6.12 -56.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242945154.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.797 kcal (2) G-P(sol) polarization free energy of solvation -62.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds