Wall clock time and date at job start Tue Mar 31 2020 06:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76195 * 102.99637 * 2 1 4 4 C 1.38892 * 120.17731 * 359.72659 * 3 2 1 5 5 C 1.38050 * 120.06363 * 179.69653 * 4 3 2 6 6 C 1.38600 * 120.41314 * 0.60414 * 5 4 3 7 7 C 1.37837 * 120.34875 * 359.67187 * 6 5 4 8 8 C 1.39650 * 119.92892 * 0.02912 * 7 6 5 9 9 C 1.47649 * 120.20469 * 179.97438 * 8 7 6 10 10 C 1.39202 * 120.33641 * 65.01524 * 9 8 7 11 11 C 1.38274 * 119.95192 * 180.02562 * 10 9 8 12 12 F 1.35104 * 119.68734 * 179.97438 * 11 10 9 13 13 C 1.39272 * 120.62756 * 359.97438 * 11 10 9 14 14 C 1.36308 * 120.68284 * 359.97438 * 13 11 10 15 15 C 1.40803 * 120.02239 * 359.75982 * 14 13 11 16 16 C 1.40759 * 120.31090 * 180.27953 * 15 14 13 17 17 H 1.08005 * 120.00123 * 205.19275 * 16 15 14 18 18 C 1.40001 * 120.00111 * 25.19600 * 16 15 14 19 19 N 1.30825 * 119.99570 * 15.93980 * 18 16 15 20 20 Si 1.86802 * 120.00167 * 195.93785 * 18 16 15 21 21 H 1.48504 * 109.46870 * 89.99838 * 20 18 16 22 22 H 1.48491 * 109.47078 * 209.99997 * 20 18 16 23 23 H 1.48504 * 109.46880 * 330.00289 * 20 18 16 24 24 H 1.09005 * 109.46827 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47556 * 60.00241 * 1 2 3 26 26 H 1.08996 * 109.46957 * 299.99709 * 1 2 3 27 27 H 1.08002 * 119.96262 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.79920 * 180.32079 * 5 4 3 29 29 H 1.08000 * 119.82788 * 179.69978 * 6 5 4 30 30 H 1.08005 * 120.03618 * 179.97438 * 7 6 5 31 31 H 1.08005 * 120.02316 * 359.97438 * 10 9 8 32 32 H 1.07997 * 119.65898 * 180.02562 * 13 11 10 33 33 H 1.07996 * 119.99152 * 180.02562 * 14 13 11 34 34 H 0.97005 * 119.99865 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1974 2.6671 -0.0057 5 6 1.5105 4.0116 0.0006 6 6 2.8337 4.4239 0.0001 7 6 3.8525 3.4954 0.0001 8 6 3.5522 2.1316 -0.0001 9 6 4.6387 1.1318 -0.0007 10 6 5.5000 1.0289 1.0880 11 6 6.5152 0.0901 1.0788 12 9 7.3485 -0.0048 2.1380 13 6 6.6868 -0.7587 -0.0120 14 6 5.8576 -0.6809 -1.0911 15 6 4.8112 0.2610 -1.1090 16 6 3.9477 0.3426 -2.2177 17 1 3.4340 1.2674 -2.4352 18 6 3.7547 -0.7751 -3.0384 19 7 4.1114 -1.9625 -2.6209 20 14 2.9878 -0.5709 -4.7294 21 1 4.0567 -0.3294 -5.7317 22 1 2.2431 -1.8046 -5.0874 23 1 2.0543 0.5839 -4.7134 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 0.1638 2.3538 -0.0106 28 1 0.7195 4.7469 0.0014 29 1 3.0679 5.4782 0.0002 30 1 4.8819 3.8223 -0.0007 31 1 5.3761 1.6825 1.9388 32 1 7.4846 -1.4865 -0.0025 33 1 6.0006 -1.3449 -1.9308 34 1 3.9773 -2.7370 -3.1893 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242945742.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:20 Heat of formation + Delta-G solvation = -7.821684 kcal Electronic energy + Delta-G solvation = -20112.411944 eV Core-core repulsion = 17015.113671 eV Total energy + Delta-G solvation = -3097.298273 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.43374 -38.71600 -37.02246 -33.69483 -31.77392 -30.73310 -29.45150 -28.32305 -28.19378 -25.11230 -22.58099 -22.14385 -20.96532 -19.96896 -17.49029 -17.03671 -16.14026 -15.49576 -15.08302 -14.66708 -14.42536 -14.16845 -14.08743 -13.81546 -13.54326 -13.34735 -12.87696 -12.46628 -12.41303 -12.07611 -11.94025 -11.79151 -11.34130 -11.16800 -11.03729 -10.86957 -10.59827 -10.37622 -10.00688 -9.61247 -9.36821 -9.19230 -8.98102 -8.30566 -7.58704 -7.36442 -6.89447 -6.43887 -4.39631 1.81009 1.88432 2.27126 2.61404 2.81013 3.01443 3.05305 3.10395 3.23543 3.84956 4.28193 4.48512 5.32896 5.38330 5.42150 5.44679 5.49361 5.58594 5.82845 5.92905 6.00458 6.07925 6.09275 6.24458 6.39415 6.61935 6.81825 6.87780 6.95512 7.05075 7.10324 7.16409 7.39145 7.43567 7.68091 7.82203 7.91369 8.11687 8.46140 8.71880 8.79637 10.03250 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.010399 B = 0.010014 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.857389 B = 2795.494699 C = 4299.331741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 S -0.030 6.030 3 C -0.075 4.075 4 C -0.143 4.143 5 C -0.123 4.123 6 C -0.135 4.135 7 C -0.106 4.106 8 C 0.035 3.965 9 C -0.181 4.181 10 C -0.087 4.087 11 C -0.054 4.054 12 F -0.175 7.175 13 C -0.122 4.122 14 C -0.138 4.138 15 C 0.129 3.871 16 C -0.417 4.417 17 H 0.080 0.920 18 C 0.084 3.916 19 N -0.775 5.775 20 Si 0.902 3.098 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.260 1.260 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.632 4.656 0.828 7.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.347 4.347 2 S 0.217 5.783 3 C -0.189 4.189 4 C -0.168 4.168 5 C -0.143 4.143 6 C -0.156 4.156 7 C -0.126 4.126 8 C 0.029 3.971 9 C -0.183 4.183 10 C -0.106 4.106 11 C -0.074 4.074 12 F -0.155 7.155 13 C -0.142 4.142 14 C -0.157 4.157 15 C 0.125 3.875 16 C -0.445 4.445 17 H 0.098 0.902 18 C -0.136 4.136 19 N -0.398 5.398 20 Si 0.726 3.274 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.184 1.184 24 H 0.116 0.884 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.138 0.862 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.147 0.853 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.025 3.259 0.797 6.042 hybrid contribution -1.154 1.128 -0.586 1.717 sum -6.179 4.387 0.211 7.581 Atomic orbital electron populations 1.23820 1.00710 1.05929 1.04276 1.86668 0.99492 1.01604 1.90522 1.22131 0.95807 0.97172 1.03779 1.20965 0.97601 0.93259 1.04985 1.20821 0.96199 0.94934 1.02343 1.20907 0.92833 0.98797 1.03032 1.21257 0.98925 0.92031 1.00398 1.18285 0.90508 0.92389 0.95907 1.18193 0.99513 1.04405 0.96197 1.20439 0.94640 0.97736 0.97778 1.17106 0.96959 1.05689 0.87628 1.91279 1.71422 1.96508 1.56269 1.20475 1.00611 0.98846 0.94245 1.20959 0.94772 1.01880 0.98099 1.17470 0.90623 0.89098 0.90304 1.19438 1.20805 0.97698 1.06564 0.90193 1.25853 0.93947 0.94485 0.99328 1.69790 1.34830 0.99251 1.35970 0.86381 0.79986 0.79144 0.81859 1.19179 1.20087 1.18393 0.88384 0.90638 0.91061 0.86833 0.87005 0.86863 0.86193 0.88218 0.88335 0.85300 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 9.15 101.05 0.92 -1.70 16 2 S -0.03 -0.59 19.46 -107.50 -2.09 -2.69 16 3 C -0.08 -1.51 5.52 -38.51 -0.21 -1.72 16 4 C -0.14 -2.46 9.36 -39.41 -0.37 -2.83 16 5 C -0.12 -1.91 10.03 -39.52 -0.40 -2.31 16 6 C -0.13 -2.14 10.02 -39.59 -0.40 -2.54 16 7 C -0.11 -1.96 9.74 -39.20 -0.38 -2.34 16 8 C 0.04 0.74 4.40 -104.69 -0.46 0.28 16 9 C -0.18 -4.21 4.66 -104.26 -0.49 -4.69 16 10 C -0.09 -2.00 9.70 -39.21 -0.38 -2.38 16 11 C -0.05 -1.28 7.30 -39.18 -0.29 -1.56 16 12 F -0.18 -4.02 17.26 2.25 0.04 -3.98 16 13 C -0.12 -2.87 9.94 -39.89 -0.40 -3.27 16 14 C -0.14 -3.38 8.62 -39.31 -0.34 -3.72 16 15 C 0.13 3.16 5.01 -106.53 -0.53 2.63 16 16 C -0.42 -10.05 6.52 -37.97 -0.25 -10.30 16 17 H 0.08 1.97 7.06 -52.48 -0.37 1.60 16 18 C 0.08 1.93 5.17 -17.32 -0.09 1.84 16 19 N -0.77 -18.20 10.88 55.55 0.60 -17.59 16 20 Si 0.90 17.69 29.59 -169.99 -5.03 12.66 16 21 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 22 H -0.28 -5.30 7.11 56.52 0.40 -4.89 16 23 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 24 H 0.10 1.29 8.14 -51.92 -0.42 0.87 16 25 H 0.07 1.05 7.74 -51.93 -0.40 0.65 16 26 H 0.07 0.93 7.76 -51.93 -0.40 0.53 16 27 H 0.11 1.69 5.89 -52.49 -0.31 1.38 16 28 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 29 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.12 2.08 8.06 -52.48 -0.42 1.66 16 31 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 32 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 33 H 0.13 3.19 6.13 -52.49 -0.32 2.87 16 34 H 0.28 6.10 8.30 -40.82 -0.34 5.76 16 LS Contribution 304.97 15.07 4.60 4.60 Total: -1.00 -25.94 304.97 -9.41 -35.35 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -3.48 Total: 6.26 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: -4.05 Total: -34.60 kcal Atomic # 7 Polarization: -18.20 SS G_CDS: 0.60 Total: -17.59 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.04 Total: -3.98 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Atomic # 16 Polarization: -0.59 SS G_CDS: -2.09 Total: -2.69 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -25.94 -9.41 -35.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242945742.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.525 kcal (2) G-P(sol) polarization free energy of solvation -25.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds