Wall clock time and date at job start Tue Mar 31 2020 06:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76195 * 102.99637 * 2 1 4 4 C 1.38892 * 120.17731 * 359.72659 * 3 2 1 5 5 C 1.38050 * 120.06363 * 179.69653 * 4 3 2 6 6 C 1.38600 * 120.41314 * 0.60414 * 5 4 3 7 7 C 1.37837 * 120.34875 * 359.67187 * 6 5 4 8 8 C 1.39650 * 119.92892 * 0.02912 * 7 6 5 9 9 C 1.47649 * 120.20469 * 179.97438 * 8 7 6 10 10 C 1.39202 * 120.33641 * 65.01524 * 9 8 7 11 11 C 1.38274 * 119.95192 * 180.02562 * 10 9 8 12 12 F 1.35104 * 119.68734 * 179.97438 * 11 10 9 13 13 C 1.39272 * 120.62756 * 359.97438 * 11 10 9 14 14 C 1.36308 * 120.68284 * 359.97438 * 13 11 10 15 15 C 1.40803 * 120.02239 * 359.75982 * 14 13 11 16 16 C 1.40759 * 120.31090 * 180.27953 * 15 14 13 17 17 H 1.08005 * 120.00123 * 205.19275 * 16 15 14 18 18 C 1.40001 * 120.00111 * 25.19600 * 16 15 14 19 19 N 1.30825 * 119.99570 * 15.93980 * 18 16 15 20 20 Si 1.86802 * 120.00167 * 195.93785 * 18 16 15 21 21 H 1.48504 * 109.46870 * 89.99838 * 20 18 16 22 22 H 1.48491 * 109.47078 * 209.99997 * 20 18 16 23 23 H 1.48504 * 109.46880 * 330.00289 * 20 18 16 24 24 H 1.09005 * 109.46827 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47556 * 60.00241 * 1 2 3 26 26 H 1.08996 * 109.46957 * 299.99709 * 1 2 3 27 27 H 1.08002 * 119.96262 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.79920 * 180.32079 * 5 4 3 29 29 H 1.08000 * 119.82788 * 179.69978 * 6 5 4 30 30 H 1.08005 * 120.03618 * 179.97438 * 7 6 5 31 31 H 1.08005 * 120.02316 * 359.97438 * 10 9 8 32 32 H 1.07997 * 119.65898 * 180.02562 * 13 11 10 33 33 H 1.07996 * 119.99152 * 180.02562 * 14 13 11 34 34 H 0.97005 * 119.99865 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1974 2.6671 -0.0057 5 6 1.5105 4.0116 0.0006 6 6 2.8337 4.4239 0.0001 7 6 3.8525 3.4954 0.0001 8 6 3.5522 2.1316 -0.0001 9 6 4.6387 1.1318 -0.0007 10 6 5.5000 1.0289 1.0880 11 6 6.5152 0.0901 1.0788 12 9 7.3485 -0.0048 2.1380 13 6 6.6868 -0.7587 -0.0120 14 6 5.8576 -0.6809 -1.0911 15 6 4.8112 0.2610 -1.1090 16 6 3.9477 0.3426 -2.2177 17 1 3.4340 1.2674 -2.4352 18 6 3.7547 -0.7751 -3.0384 19 7 4.1114 -1.9625 -2.6209 20 14 2.9878 -0.5709 -4.7294 21 1 4.0567 -0.3294 -5.7317 22 1 2.2431 -1.8046 -5.0874 23 1 2.0543 0.5839 -4.7134 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 0.1638 2.3538 -0.0106 28 1 0.7195 4.7469 0.0014 29 1 3.0679 5.4782 0.0002 30 1 4.8819 3.8223 -0.0007 31 1 5.3761 1.6825 1.9388 32 1 7.4846 -1.4865 -0.0025 33 1 6.0006 -1.3449 -1.9308 34 1 3.9773 -2.7370 -3.1893 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242945742.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:19 Heat of formation + Delta-G solvation = -17.654341 kcal Electronic energy + Delta-G solvation = -20112.838320 eV Core-core repulsion = 17015.113671 eV Total energy + Delta-G solvation = -3097.724649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.27375 -40.22280 -38.65540 -35.47037 -33.34456 -32.07321 -31.24552 -29.81598 -29.51322 -26.90053 -24.14920 -23.54371 -22.71327 -21.58772 -19.26095 -18.56766 -17.71721 -17.21940 -16.61666 -16.31528 -16.08339 -15.86255 -15.71865 -15.26591 -14.78601 -14.59121 -14.53285 -14.07349 -13.94713 -13.72477 -13.32325 -13.23156 -13.02771 -12.79936 -12.54771 -12.41446 -12.19966 -11.89666 -11.72488 -11.33167 -11.04918 -10.64992 -10.39974 -9.79389 -9.32258 -9.16085 -8.62834 -7.95733 -6.21222 0.38342 0.51720 0.84400 0.90364 1.06899 1.40806 1.49548 1.51014 1.89178 2.21740 2.68087 2.93735 3.63901 3.91940 4.10391 4.19313 4.28593 4.30713 4.32865 4.34427 4.50325 4.64857 4.69231 4.87965 4.99869 5.07147 5.18494 5.22513 5.33337 5.43779 5.59849 5.65640 5.69409 5.85323 5.96533 6.08332 6.19597 6.30763 6.63169 6.91417 6.98590 8.31894 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.010399 B = 0.010014 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.857389 B = 2795.494699 C = 4299.331741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 S -0.119 6.119 3 C -0.083 4.083 4 C -0.147 4.147 5 C -0.112 4.112 6 C -0.128 4.128 7 C -0.118 4.118 8 C -0.003 4.003 9 C -0.174 4.174 10 C -0.096 4.096 11 C -0.072 4.072 12 F -0.174 7.174 13 C -0.127 4.127 14 C -0.160 4.160 15 C 0.110 3.890 16 C -0.423 4.423 17 H 0.069 0.931 18 C 0.055 3.945 19 N -0.798 5.798 20 Si 0.961 3.039 21 H -0.263 1.263 22 H -0.267 1.267 23 H -0.262 1.262 24 H 0.112 0.888 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.138 0.862 28 H 0.154 0.846 29 H 0.150 0.850 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.932 6.538 0.344 10.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 S 0.127 5.873 3 C -0.197 4.197 4 C -0.172 4.172 5 C -0.132 4.132 6 C -0.148 4.148 7 C -0.138 4.138 8 C -0.009 4.009 9 C -0.176 4.176 10 C -0.115 4.115 11 C -0.092 4.092 12 F -0.153 7.153 13 C -0.147 4.147 14 C -0.179 4.179 15 C 0.106 3.894 16 C -0.451 4.451 17 H 0.087 0.913 18 C -0.164 4.164 19 N -0.422 5.422 20 Si 0.783 3.217 21 H -0.188 1.188 22 H -0.191 1.191 23 H -0.186 1.186 24 H 0.130 0.870 25 H 0.104 0.896 26 H 0.109 0.891 27 H 0.155 0.845 28 H 0.171 0.829 29 H 0.168 0.832 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.310 5.149 0.324 8.948 hybrid contribution -0.545 0.631 -0.375 0.914 sum -7.855 5.780 -0.051 9.752 Atomic orbital electron populations 1.23792 0.95462 1.07373 1.05695 1.86833 1.05438 1.03898 1.91164 1.22124 0.96051 0.96745 1.04731 1.21338 0.98107 0.93580 1.04125 1.21330 0.97155 0.95017 0.99675 1.21315 0.92395 1.00087 1.01018 1.21413 1.00097 0.91532 1.00750 1.18386 0.90562 0.93025 0.98943 1.18483 0.99595 1.04144 0.95388 1.20648 0.94620 0.97872 0.98312 1.17250 0.97633 1.06352 0.87932 1.91268 1.71393 1.96556 1.56098 1.20614 1.00873 0.99146 0.94026 1.20943 0.95763 1.02764 0.98415 1.17737 0.90887 0.89640 0.91140 1.19366 1.20993 0.97643 1.07130 0.91322 1.26470 0.94106 0.93859 1.01955 1.69827 1.35300 0.99912 1.37145 0.85493 0.79202 0.79158 0.77847 1.18789 1.19109 1.18568 0.86973 0.89586 0.89054 0.84455 0.82861 0.83240 0.86013 0.87029 0.86881 0.86204 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 9.15 113.37 1.04 -3.17 16 2 S -0.12 -4.80 19.46 -56.49 -1.10 -5.90 16 3 C -0.08 -3.27 5.52 22.97 0.13 -3.14 16 4 C -0.15 -4.61 9.36 22.38 0.21 -4.40 16 5 C -0.11 -3.00 10.03 22.31 0.22 -2.77 16 6 C -0.13 -3.61 10.02 22.26 0.22 -3.38 16 7 C -0.12 -4.23 9.74 22.52 0.22 -4.01 16 8 C 0.00 -0.14 4.40 -19.91 -0.09 -0.22 16 9 C -0.17 -8.31 4.66 -19.63 -0.09 -8.40 16 10 C -0.10 -4.51 9.70 22.51 0.22 -4.29 16 11 C -0.07 -3.49 7.30 22.53 0.16 -3.33 16 12 F -0.17 -8.08 17.26 44.97 0.78 -7.31 16 13 C -0.13 -6.19 9.94 22.07 0.22 -5.97 16 14 C -0.16 -8.15 8.62 22.45 0.19 -7.95 16 15 C 0.11 5.57 5.01 -21.10 -0.11 5.47 16 16 C -0.42 -20.89 6.52 23.31 0.15 -20.74 16 17 H 0.07 3.46 7.06 -2.91 -0.02 3.44 16 18 C 0.05 2.53 5.17 85.27 0.44 2.97 16 19 N -0.80 -38.26 10.88 21.84 0.24 -38.02 16 20 Si 0.96 36.04 29.59 68.60 2.03 38.07 16 21 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 22 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 23 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 24 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 25 H 0.09 2.15 7.74 -2.39 -0.02 2.13 16 26 H 0.09 2.11 7.76 -2.39 -0.02 2.09 16 27 H 0.14 3.54 5.89 -2.91 -0.02 3.52 16 28 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 30 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 31 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 32 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 33 H 0.12 6.21 6.13 -2.91 -0.02 6.20 16 34 H 0.29 12.65 8.30 -92.70 -0.77 11.88 16 Total: -1.00 -57.75 304.97 6.21 -51.54 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 1.12 Total: 24.96 kcal Atomic # 6 Polarization: -66.49 SS G_CDS: 3.14 Total: -63.34 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.24 Total: -38.02 kcal Atomic # 9 Polarization: -8.08 SS G_CDS: 0.78 Total: -7.31 kcal Atomic # 14 Polarization: 36.04 SS G_CDS: 2.03 Total: 38.07 kcal Atomic # 16 Polarization: -4.80 SS G_CDS: -1.10 Total: -5.90 kcal Total: -57.75 6.21 -51.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242945742.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.887 kcal (2) G-P(sol) polarization free energy of solvation -57.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds