Wall clock time and date at job start Tue Mar 31 2020 06:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76201 * 102.99884 * 2 1 4 4 C 1.38886 * 120.17657 * 359.97277 * 3 2 1 5 5 C 1.38054 * 120.06386 * 180.02562 * 4 3 2 6 6 C 1.38617 * 120.41983 * 359.97438 * 5 4 3 7 7 C 1.37821 * 120.35053 * 359.73779 * 6 5 4 8 8 C 1.39679 * 119.92583 * 0.53867 * 7 6 5 9 9 C 1.47610 * 120.20463 * 179.74078 * 8 7 6 10 10 C 1.39302 * 120.26682 * 64.97784 * 9 8 7 11 11 C 1.37901 * 120.12306 * 180.26728 * 10 9 8 12 12 C 1.39248 * 120.67127 * 359.49632 * 11 10 9 13 13 F 1.35105 * 119.73460 * 180.25039 * 12 11 10 14 14 C 1.37574 * 120.53224 * 0.22803 * 12 11 10 15 15 C 1.40743 * 119.85567 * 0.02562 * 14 12 11 16 16 C 1.40799 * 120.32635 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99905 * 204.98549 * 16 15 14 18 18 C 1.40012 * 120.00350 * 24.97910 * 16 15 14 19 19 N 1.30812 * 119.99340 * 16.26184 * 18 16 15 20 20 Si 1.86792 * 120.00350 * 196.25381 * 18 16 15 21 21 H 1.48505 * 109.47190 * 60.00369 * 20 18 16 22 22 H 1.48503 * 109.47168 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47259 * 300.00544 * 20 18 16 24 24 H 1.09000 * 109.47059 * 300.00552 * 1 2 3 25 25 H 1.09000 * 109.46911 * 60.00023 * 1 2 3 26 26 H 1.08993 * 109.47148 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.96760 * 0.02697 * 4 3 2 28 28 H 1.08004 * 119.79330 * 179.97438 * 5 4 3 29 29 H 1.07997 * 119.82385 * 179.97438 * 6 5 4 30 30 H 1.07996 * 120.03738 * 180.27636 * 7 6 5 31 31 H 1.08007 * 119.93716 * 0.02562 * 10 9 8 32 32 H 1.08004 * 119.66173 * 179.76767 * 11 10 9 33 33 H 1.07995 * 120.07522 * 180.02562 * 14 12 11 34 34 H 0.96997 * 119.99775 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1975 2.6672 -0.0006 5 6 1.5107 4.0117 -0.0011 6 6 2.8341 4.4241 -0.0005 7 6 3.8528 3.4958 0.0060 8 6 3.5525 2.1317 0.0007 9 6 4.6388 1.1322 0.0019 10 6 5.4958 1.0280 1.0951 11 6 6.5130 0.0969 1.0908 12 6 6.6912 -0.7553 0.0041 13 9 7.6909 -1.6639 0.0220 14 6 5.8573 -0.6798 -1.0875 15 6 4.8151 0.2658 -1.1089 16 6 3.9554 0.3513 -2.2207 17 1 3.4436 1.2772 -2.4376 18 6 3.7641 -0.7641 -3.0451 19 7 4.1122 -1.9537 -2.6271 20 14 3.0116 -0.5534 -4.7418 21 1 3.8659 0.3503 -5.5535 22 1 2.9164 -1.8767 -5.4089 23 1 1.6538 0.0338 -4.6117 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.1639 2.3540 -0.0006 28 1 0.7196 4.7470 -0.0020 29 1 3.0681 5.4784 -0.0014 30 1 4.8821 3.8228 0.0109 31 1 5.3657 1.6803 1.9461 32 1 7.1755 0.0251 1.9407 33 1 6.0019 -1.3447 -1.9261 34 1 3.9793 -2.7265 -3.1981 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242946495.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:21 Heat of formation + Delta-G solvation = -8.679996 kcal Electronic energy + Delta-G solvation = -20120.509842 eV Core-core repulsion = 17023.174349 eV Total energy + Delta-G solvation = -3097.335493 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.63072 -38.69875 -36.95070 -33.77669 -31.55189 -30.73116 -29.73897 -28.31903 -27.71220 -25.46212 -22.35286 -22.14947 -21.13015 -19.87840 -17.62028 -16.97883 -15.91677 -15.67996 -14.94457 -14.76805 -14.49160 -14.29407 -14.18896 -13.62064 -13.40322 -13.34615 -12.95839 -12.64987 -12.42030 -12.06203 -11.75644 -11.69917 -11.61043 -11.17363 -10.97876 -10.67834 -10.59684 -10.39940 -10.00702 -9.69806 -9.36484 -9.22883 -8.97838 -8.24916 -7.59983 -7.27577 -6.86497 -6.42851 -4.45756 1.81955 1.89176 2.27973 2.64402 2.80551 3.01473 3.04392 3.15158 3.24517 3.85559 4.28543 4.49727 5.33060 5.38982 5.42546 5.45389 5.51010 5.61588 5.68904 5.92290 5.95093 6.07516 6.22608 6.36198 6.38877 6.58854 6.81029 6.89180 6.95585 6.99031 7.10141 7.22344 7.43983 7.48043 7.67322 7.77260 7.88251 8.14542 8.47231 8.72242 8.77828 10.04214 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.011782 B = 0.009038 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.994797 B = 3097.209003 C = 4289.772046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 S -0.030 6.030 3 C -0.077 4.077 4 C -0.143 4.143 5 C -0.124 4.124 6 C -0.135 4.135 7 C -0.107 4.107 8 C 0.037 3.963 9 C -0.204 4.204 10 C -0.038 4.038 11 C -0.284 4.284 12 C 0.109 3.891 13 F -0.168 7.168 14 C -0.198 4.198 15 C 0.153 3.847 16 C -0.418 4.418 17 H 0.081 0.919 18 C 0.085 3.915 19 N -0.771 5.771 20 Si 0.902 3.098 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.263 1.263 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.132 0.868 34 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.740 5.456 1.998 8.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.347 4.347 2 S 0.216 5.784 3 C -0.190 4.190 4 C -0.168 4.168 5 C -0.144 4.144 6 C -0.156 4.156 7 C -0.127 4.127 8 C 0.031 3.969 9 C -0.206 4.206 10 C -0.056 4.056 11 C -0.304 4.304 12 C 0.090 3.910 13 F -0.148 7.148 14 C -0.218 4.218 15 C 0.149 3.851 16 C -0.446 4.446 17 H 0.099 0.901 18 C -0.137 4.137 19 N -0.394 5.394 20 Si 0.726 3.274 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.187 1.187 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.138 0.862 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.149 0.851 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.121 4.024 1.933 6.794 hybrid contribution -1.117 0.995 -0.754 1.675 sum -6.238 5.019 1.179 8.093 Atomic orbital electron populations 1.23815 1.00730 1.05912 1.04255 1.86675 0.99464 1.01665 1.90552 1.22152 0.95871 0.97116 1.03864 1.20964 0.97593 0.93266 1.04977 1.20819 0.96193 0.94921 1.02478 1.20906 0.92844 0.98779 1.03031 1.21259 0.98879 0.92043 1.00552 1.18337 0.90548 0.92431 0.95585 1.18468 1.00380 1.04900 0.96891 1.20304 0.93171 0.96129 0.96024 1.20108 1.05759 1.04710 0.99845 1.17772 0.87149 0.89312 0.96817 1.91331 1.60155 1.66170 1.97097 1.21239 0.96881 1.05272 0.98387 1.17144 0.89599 0.88121 0.90236 1.19394 1.21005 0.97761 1.06471 0.90084 1.25877 0.93872 0.94478 0.99427 1.69789 1.34198 0.99288 1.36140 0.86435 0.80595 0.78662 0.81666 1.18674 1.20148 1.18698 0.91073 0.90659 0.88406 0.86888 0.87052 0.86912 0.86210 0.88457 0.88303 0.85083 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 9.15 101.05 0.92 -1.71 16 2 S -0.03 -0.61 19.49 -107.50 -2.10 -2.70 16 3 C -0.08 -1.52 5.53 -38.50 -0.21 -1.74 16 4 C -0.14 -2.44 9.36 -39.41 -0.37 -2.81 16 5 C -0.12 -1.92 10.03 -39.51 -0.40 -2.31 16 6 C -0.13 -2.11 10.02 -39.59 -0.40 -2.51 16 7 C -0.11 -1.95 9.74 -39.20 -0.38 -2.33 16 8 C 0.04 0.77 4.38 -104.69 -0.46 0.31 16 9 C -0.20 -4.70 4.65 -104.25 -0.48 -5.19 16 10 C -0.04 -0.83 9.72 -39.31 -0.38 -1.21 16 11 C -0.28 -6.44 10.00 -39.33 -0.39 -6.83 16 12 C 0.11 2.66 7.28 -39.45 -0.29 2.37 16 13 F -0.17 -4.00 17.26 2.25 0.04 -3.96 16 14 C -0.20 -5.06 8.64 -38.88 -0.34 -5.39 16 15 C 0.15 3.81 5.02 -106.55 -0.53 3.27 16 16 C -0.42 -10.22 6.55 -37.95 -0.25 -10.47 16 17 H 0.08 2.00 7.07 -52.49 -0.37 1.63 16 18 C 0.08 1.98 5.17 -17.32 -0.09 1.89 16 19 N -0.77 -18.65 10.89 55.55 0.60 -18.05 16 20 Si 0.90 17.94 29.59 -169.99 -5.03 12.91 16 21 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 24 H 0.07 0.93 7.75 -51.92 -0.40 0.52 16 25 H 0.07 1.06 7.75 -51.92 -0.40 0.66 16 26 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.11 1.68 5.89 -52.49 -0.31 1.37 16 28 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 30 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 31 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 32 H 0.10 2.03 8.06 -52.48 -0.42 1.60 16 33 H 0.13 3.47 6.13 -52.49 -0.32 3.14 16 34 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 LS Contribution 305.13 15.07 4.60 4.60 Total: -1.00 -26.18 305.13 -9.41 -35.59 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -3.48 Total: 6.27 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: -4.05 Total: -34.65 kcal Atomic # 7 Polarization: -18.65 SS G_CDS: 0.60 Total: -18.05 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.04 Total: -3.96 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Atomic # 16 Polarization: -0.61 SS G_CDS: -2.10 Total: -2.70 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.18 -9.41 -35.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242946495.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.905 kcal (2) G-P(sol) polarization free energy of solvation -26.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds