Wall clock time and date at job start Tue Mar 31 2020 06:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76197 * 102.99981 * 2 1 4 4 C 1.38851 * 120.14804 * 0.29348 * 3 2 1 5 5 C 1.38101 * 120.03925 * 180.31936 * 4 3 2 6 6 C 1.38437 * 120.33253 * 359.68257 * 5 4 3 7 7 C 1.38025 * 120.28947 * 359.97438 * 6 5 4 8 8 C 1.39268 * 119.95905 * 0.02562 * 7 6 5 9 9 C 1.48287 * 120.16617 * 180.02562 * 8 7 6 10 10 C 1.39879 * 119.96970 * 130.00441 * 9 8 7 11 11 C 1.38224 * 120.41366 * 179.97438 * 10 9 8 12 12 C 1.38079 * 120.35162 * 0.29621 * 11 10 9 13 13 F 1.35104 * 120.03396 * 179.70709 * 12 11 10 14 14 C 1.41044 * 119.92448 * 359.45127 * 12 11 10 15 15 C 1.41318 * 120.20060 * 180.29949 * 14 12 11 16 16 H 1.07995 * 120.00125 * 334.91618 * 15 14 12 17 17 C 1.39921 * 119.99965 * 154.91352 * 15 14 12 18 18 N 1.30854 * 119.99763 * 342.89648 * 17 15 14 19 19 Si 1.86802 * 119.99912 * 162.89179 * 17 15 14 20 20 H 1.48502 * 109.46588 * 90.00522 * 19 17 15 21 21 H 1.48500 * 109.46813 * 209.99894 * 19 17 15 22 22 H 1.48495 * 109.47347 * 330.00335 * 19 17 15 23 23 C 1.38712 * 119.96707 * 309.97331 * 9 8 7 24 24 H 1.08999 * 109.47178 * 300.00727 * 1 2 3 25 25 H 1.09006 * 109.46572 * 60.00382 * 1 2 3 26 26 H 1.08994 * 109.47180 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.98038 * 0.02562 * 4 3 2 28 28 H 1.07995 * 119.83841 * 179.70419 * 5 4 3 29 29 H 1.07999 * 119.85750 * 180.02562 * 6 5 4 30 30 H 1.08004 * 120.02405 * 180.02562 * 7 6 5 31 31 H 1.08000 * 119.79161 * 359.97198 * 10 9 8 32 32 H 1.08005 * 119.82093 * 180.02562 * 11 10 9 33 33 H 0.96997 * 120.00049 * 180.02562 * 18 17 15 34 34 H 1.08001 * 120.17379 * 0.04999 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1974 2.6664 0.0062 5 6 1.5105 4.0114 -0.0005 6 6 2.8328 4.4214 -0.0067 7 6 3.8507 3.4891 -0.0058 8 6 3.5486 2.1296 0.0009 9 6 4.6386 1.1241 0.0025 10 6 4.6263 0.0819 0.9353 11 6 5.6373 -0.8607 0.9447 12 6 6.6746 -0.7804 0.0368 13 9 7.6625 -1.7017 0.0556 14 6 6.6986 0.2614 -0.9136 15 6 7.7540 0.3455 -1.8496 16 1 8.7149 -0.0912 -1.6207 17 6 7.5542 0.9947 -3.0729 18 7 6.3391 1.2261 -3.4999 19 14 9.0219 1.5309 -4.0965 20 1 9.4055 0.4358 -5.0233 21 1 8.6634 2.7401 -4.8804 22 1 10.1635 1.8429 -3.1995 23 6 5.6690 1.2177 -0.9214 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 0.1639 2.3529 0.0114 28 1 0.7200 4.7472 -0.0005 29 1 3.0690 5.4752 -0.0115 30 1 4.8808 3.8137 -0.0102 31 1 3.8219 0.0132 1.6527 32 1 5.6181 -1.6617 1.6690 33 1 6.2005 1.6758 -4.3481 34 1 5.6803 2.0219 -1.6422 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242946564.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:23 Heat of formation + Delta-G solvation = -12.252292 kcal Electronic energy + Delta-G solvation = -19643.941836 eV Core-core repulsion = 16546.451438 eV Total energy + Delta-G solvation = -3097.490399 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.23265 -38.92684 -37.04549 -33.89008 -31.71866 -30.99547 -29.80817 -28.61264 -27.75479 -25.37777 -22.58484 -22.49363 -21.12294 -19.96874 -17.69241 -16.93009 -16.08489 -15.81493 -15.20390 -14.93702 -14.40673 -14.37063 -13.97890 -13.83309 -13.63172 -13.58794 -12.91719 -12.70708 -12.48297 -12.32123 -11.84637 -11.69934 -11.63843 -11.14242 -11.12602 -10.89615 -10.82799 -10.44895 -10.02225 -9.69770 -9.55061 -9.39113 -9.27584 -8.58764 -7.60918 -7.33603 -6.87891 -6.77979 -4.44383 1.49522 1.62201 1.87937 2.64718 2.70738 2.87984 3.03944 3.07748 3.15355 3.87982 4.05366 4.49354 5.10880 5.16661 5.17821 5.18748 5.32325 5.46353 5.67704 5.69662 5.81360 5.91780 6.05302 6.14991 6.28811 6.51375 6.55448 6.71117 6.81835 6.87136 7.07638 7.13648 7.22157 7.45204 7.56479 7.84199 7.91213 8.03209 8.45503 8.69070 8.77277 10.08300 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.005906 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.580141 B = 4739.797884 C = 5680.782268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 S -0.072 6.072 3 C -0.086 4.086 4 C -0.137 4.137 5 C -0.119 4.119 6 C -0.126 4.126 7 C -0.096 4.096 8 C 0.010 3.990 9 C -0.061 4.061 10 C -0.190 4.190 11 C -0.121 4.121 12 C -0.023 4.023 13 F -0.163 7.163 14 C 0.084 3.916 15 C -0.453 4.453 16 H 0.083 0.917 17 C 0.076 3.924 18 N -0.787 5.787 19 Si 0.911 3.089 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.116 4.116 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.283 0.717 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.327 4.288 3.916 10.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.339 4.339 2 S 0.173 5.827 3 C -0.198 4.198 4 C -0.161 4.161 5 C -0.139 4.139 6 C -0.146 4.146 7 C -0.116 4.116 8 C 0.005 3.995 9 C -0.062 4.062 10 C -0.210 4.210 11 C -0.140 4.140 12 C -0.044 4.044 13 F -0.142 7.142 14 C 0.081 3.919 15 C -0.482 4.482 16 H 0.101 0.899 17 C -0.143 4.143 18 N -0.412 5.412 19 Si 0.735 3.265 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.136 4.136 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.120 0.880 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.146 0.854 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.821 3.259 3.693 10.103 hybrid contribution -0.222 1.207 -0.638 1.383 sum -9.042 4.466 3.056 10.538 Atomic orbital electron populations 1.23803 0.99005 1.06308 1.04764 1.86306 1.01816 1.02619 1.91987 1.21864 0.95835 0.96764 1.05357 1.20981 0.97624 0.93222 1.04251 1.20892 0.96406 0.94983 1.01577 1.21035 0.92731 0.99213 1.01643 1.21255 0.99581 0.91681 0.99061 1.18676 0.90730 0.93355 0.96768 1.18434 0.94502 0.95084 0.98153 1.20180 1.00253 0.97739 1.02875 1.20385 0.94948 0.99676 0.99004 1.17948 0.89920 0.91795 1.04710 1.91272 1.61196 1.65202 1.96559 1.17518 0.93699 0.89443 0.91287 1.19486 0.98539 1.31072 0.99136 0.89878 1.25909 0.96950 0.93422 0.97976 1.69819 1.21924 1.30134 1.19281 0.86260 0.81792 0.78878 0.79613 1.19318 1.19958 1.18295 1.21232 0.93976 0.99706 0.98671 0.90464 0.90461 0.88029 0.86437 0.86484 0.86261 0.85430 0.87526 0.87904 0.90565 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.15 101.05 0.92 -1.07 16 2 S -0.07 -1.22 19.36 -107.50 -2.08 -3.30 16 3 C -0.09 -1.53 6.09 -38.68 -0.24 -1.77 16 4 C -0.14 -2.05 9.36 -39.40 -0.37 -2.42 16 5 C -0.12 -1.65 10.03 -39.56 -0.40 -2.04 16 6 C -0.13 -1.84 10.03 -39.59 -0.40 -2.24 16 7 C -0.10 -1.69 9.49 -39.28 -0.37 -2.07 16 8 C 0.01 0.20 5.48 -104.70 -0.57 -0.37 16 9 C -0.06 -1.38 5.06 -104.97 -0.53 -1.91 16 10 C -0.19 -4.17 8.08 -38.97 -0.32 -4.49 16 11 C -0.12 -2.77 9.99 -39.64 -0.40 -3.16 16 12 C -0.02 -0.60 7.31 -38.58 -0.28 -0.88 16 13 F -0.16 -4.15 16.71 2.25 0.04 -4.12 16 14 C 0.08 2.23 5.57 -106.80 -0.59 1.64 16 15 C -0.45 -12.08 8.77 -37.78 -0.33 -12.41 16 16 H 0.08 2.19 7.73 -52.49 -0.41 1.79 16 17 C 0.08 1.89 5.15 -17.34 -0.09 1.80 16 18 N -0.79 -19.96 10.97 55.55 0.61 -19.35 16 19 Si 0.91 18.49 29.59 -169.99 -5.03 13.46 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 C -0.12 -2.92 8.13 -38.54 -0.31 -3.24 16 24 H 0.08 0.80 7.74 -51.92 -0.40 0.40 16 25 H 0.08 0.85 7.76 -51.92 -0.40 0.44 16 26 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.12 1.46 5.88 -52.49 -0.31 1.15 16 28 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.13 2.19 8.04 -52.48 -0.42 1.76 16 31 H 0.11 2.15 7.06 -52.49 -0.37 1.78 16 32 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 33 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 34 H 0.13 3.31 6.16 -52.49 -0.32 2.99 16 LS Contribution 306.62 15.07 4.62 4.62 Total: -1.00 -27.98 306.62 -9.58 -37.56 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -3.46 Total: 5.76 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: -4.27 Total: -34.64 kcal Atomic # 7 Polarization: -19.96 SS G_CDS: 0.61 Total: -19.35 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.04 Total: -4.12 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Atomic # 16 Polarization: -1.22 SS G_CDS: -2.08 Total: -3.30 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.98 -9.58 -37.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242946564.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.306 kcal (2) G-P(sol) polarization free energy of solvation -27.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds