Wall clock time and date at job start Tue Mar 31 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76197 * 102.99981 * 2 1 4 4 C 1.38851 * 120.14804 * 0.29348 * 3 2 1 5 5 C 1.38101 * 120.03925 * 180.31936 * 4 3 2 6 6 C 1.38437 * 120.33253 * 359.68257 * 5 4 3 7 7 C 1.38025 * 120.28947 * 359.97438 * 6 5 4 8 8 C 1.39268 * 119.95905 * 0.02562 * 7 6 5 9 9 C 1.48287 * 120.16617 * 180.02562 * 8 7 6 10 10 C 1.39879 * 119.96970 * 130.00441 * 9 8 7 11 11 C 1.38224 * 120.41366 * 179.97438 * 10 9 8 12 12 C 1.38079 * 120.35162 * 0.29621 * 11 10 9 13 13 F 1.35104 * 120.03396 * 179.70709 * 12 11 10 14 14 C 1.41044 * 119.92448 * 359.45127 * 12 11 10 15 15 C 1.41318 * 120.20060 * 180.29949 * 14 12 11 16 16 H 1.07995 * 120.00125 * 334.91618 * 15 14 12 17 17 C 1.39921 * 119.99965 * 154.91352 * 15 14 12 18 18 N 1.30854 * 119.99763 * 342.89648 * 17 15 14 19 19 Si 1.86802 * 119.99912 * 162.89179 * 17 15 14 20 20 H 1.48502 * 109.46588 * 90.00522 * 19 17 15 21 21 H 1.48500 * 109.46813 * 209.99894 * 19 17 15 22 22 H 1.48495 * 109.47347 * 330.00335 * 19 17 15 23 23 C 1.38712 * 119.96707 * 309.97331 * 9 8 7 24 24 H 1.08999 * 109.47178 * 300.00727 * 1 2 3 25 25 H 1.09006 * 109.46572 * 60.00382 * 1 2 3 26 26 H 1.08994 * 109.47180 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.98038 * 0.02562 * 4 3 2 28 28 H 1.07995 * 119.83841 * 179.70419 * 5 4 3 29 29 H 1.07999 * 119.85750 * 180.02562 * 6 5 4 30 30 H 1.08004 * 120.02405 * 180.02562 * 7 6 5 31 31 H 1.08000 * 119.79161 * 359.97198 * 10 9 8 32 32 H 1.08005 * 119.82093 * 180.02562 * 11 10 9 33 33 H 0.96997 * 120.00049 * 180.02562 * 18 17 15 34 34 H 1.08001 * 120.17379 * 0.04999 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1974 2.6664 0.0062 5 6 1.5105 4.0114 -0.0005 6 6 2.8328 4.4214 -0.0067 7 6 3.8507 3.4891 -0.0058 8 6 3.5486 2.1296 0.0009 9 6 4.6386 1.1241 0.0025 10 6 4.6263 0.0819 0.9353 11 6 5.6373 -0.8607 0.9447 12 6 6.6746 -0.7804 0.0368 13 9 7.6625 -1.7017 0.0556 14 6 6.6986 0.2614 -0.9136 15 6 7.7540 0.3455 -1.8496 16 1 8.7149 -0.0912 -1.6207 17 6 7.5542 0.9947 -3.0729 18 7 6.3391 1.2261 -3.4999 19 14 9.0219 1.5309 -4.0965 20 1 9.4055 0.4358 -5.0233 21 1 8.6634 2.7401 -4.8804 22 1 10.1635 1.8429 -3.1995 23 6 5.6690 1.2177 -0.9214 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 0.1639 2.3529 0.0114 28 1 0.7200 4.7472 -0.0005 29 1 3.0690 5.4752 -0.0115 30 1 4.8808 3.8137 -0.0102 31 1 3.8219 0.0132 1.6527 32 1 5.6181 -1.6617 1.6690 33 1 6.2005 1.6758 -4.3481 34 1 5.6803 2.0219 -1.6422 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242946564.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:22 Heat of formation + Delta-G solvation = -24.576251 kcal Electronic energy + Delta-G solvation = -19644.476243 eV Core-core repulsion = 16546.451438 eV Total energy + Delta-G solvation = -3098.024806 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.21745 -40.32824 -38.73059 -35.74373 -33.23122 -32.23012 -31.65913 -29.59532 -29.36550 -27.27392 -24.04782 -23.89865 -22.84538 -21.61865 -19.38580 -18.36762 -17.98692 -17.33615 -16.86088 -16.51290 -16.05878 -15.86118 -15.72105 -15.07877 -14.86521 -14.71059 -14.50721 -14.42932 -13.93823 -13.59894 -13.50792 -13.30940 -13.16017 -12.80993 -12.70416 -12.49703 -12.26052 -12.00205 -11.75412 -11.45448 -11.15420 -10.86425 -10.61681 -9.98003 -9.51192 -9.03597 -8.69995 -8.18932 -6.43390 0.11714 0.37097 0.66819 0.91412 0.96107 1.35554 1.45140 1.51746 1.70620 2.17716 2.58524 2.83716 3.48607 3.85663 3.98454 4.02783 4.18598 4.31601 4.32788 4.34249 4.52295 4.54468 4.67641 4.83031 4.88629 4.96874 5.02820 5.14289 5.23360 5.29811 5.51940 5.55412 5.62871 5.70850 5.96489 6.00280 6.05452 6.14478 6.51637 6.75481 6.84466 8.24650 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.005906 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.580141 B = 4739.797884 C = 5680.782268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S -0.146 6.146 3 C -0.091 4.091 4 C -0.136 4.136 5 C -0.104 4.104 6 C -0.122 4.122 7 C -0.111 4.111 8 C -0.034 4.034 9 C -0.050 4.050 10 C -0.181 4.181 11 C -0.119 4.119 12 C -0.059 4.059 13 F -0.170 7.170 14 C 0.056 3.944 15 C -0.494 4.494 16 H 0.071 0.929 17 C 0.040 3.960 18 N -0.815 5.815 19 Si 0.983 3.017 20 H -0.263 1.263 21 H -0.259 1.259 22 H -0.260 1.260 23 C -0.136 4.136 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.119 0.881 27 H 0.149 0.851 28 H 0.161 0.839 29 H 0.152 0.848 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.292 0.708 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.124 6.087 4.045 14.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.098 5.902 3 C -0.204 4.204 4 C -0.160 4.160 5 C -0.123 4.123 6 C -0.142 4.142 7 C -0.131 4.131 8 C -0.040 4.040 9 C -0.050 4.050 10 C -0.201 4.201 11 C -0.138 4.138 12 C -0.079 4.079 13 F -0.149 7.149 14 C 0.053 3.947 15 C -0.523 4.523 16 H 0.089 0.911 17 C -0.176 4.176 18 N -0.440 5.440 19 Si 0.803 3.197 20 H -0.187 1.187 21 H -0.183 1.183 22 H -0.183 1.183 23 C -0.156 4.156 24 H 0.115 0.885 25 H 0.107 0.893 26 H 0.138 0.862 27 H 0.167 0.833 28 H 0.179 0.821 29 H 0.170 0.830 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.103 0.897 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.625 5.054 3.840 13.245 hybrid contribution 0.384 0.693 -0.582 0.983 sum -11.242 5.747 3.257 13.039 Atomic orbital electron populations 1.23834 0.93384 1.08058 1.06269 1.86418 1.07967 1.03606 1.92226 1.21938 0.95591 0.97246 1.05580 1.21410 0.98375 0.93266 1.02908 1.21433 0.97022 0.95393 0.98489 1.21405 0.92498 1.00212 1.00108 1.21343 1.00300 0.91620 0.99856 1.18676 0.90979 0.93581 1.00727 1.18736 0.94286 0.95506 0.96510 1.20463 1.00079 0.96973 1.02597 1.20690 0.94035 1.00426 0.98646 1.18242 0.91073 0.92357 1.06208 1.91232 1.61617 1.65361 1.96716 1.17886 0.94539 0.90272 0.91980 1.19644 0.98348 1.33550 1.00753 0.91087 1.26723 0.99880 0.92623 0.98403 1.69864 1.23746 1.30431 1.20000 0.85190 0.77818 0.78906 0.77779 1.18724 1.18252 1.18337 1.21138 0.95190 0.99569 0.99687 0.88465 0.89264 0.86214 0.83341 0.82127 0.83025 0.86441 0.85513 0.85319 0.89735 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.15 113.37 1.04 -1.88 16 2 S -0.15 -4.80 19.36 -56.49 -1.09 -5.89 16 3 C -0.09 -3.13 6.09 22.86 0.14 -2.99 16 4 C -0.14 -3.56 9.36 22.38 0.21 -3.35 16 5 C -0.10 -2.39 10.03 22.28 0.22 -2.17 16 6 C -0.12 -3.21 10.03 22.27 0.22 -2.99 16 7 C -0.11 -3.90 9.49 22.47 0.21 -3.69 16 8 C -0.03 -1.37 5.48 -19.92 -0.11 -1.48 16 9 C -0.05 -2.33 5.06 -20.09 -0.10 -2.43 16 10 C -0.18 -8.11 8.08 22.66 0.18 -7.93 16 11 C -0.12 -5.59 9.99 22.23 0.22 -5.37 16 12 C -0.06 -3.16 7.31 22.92 0.17 -2.99 16 13 F -0.17 -9.12 16.71 44.97 0.75 -8.37 16 14 C 0.06 3.18 5.57 -21.28 -0.12 3.06 16 15 C -0.49 -27.95 8.77 23.44 0.21 -27.74 16 16 H 0.07 4.01 7.73 -2.91 -0.02 3.99 16 17 C 0.04 2.04 5.15 85.25 0.44 2.48 16 18 N -0.82 -42.94 10.97 21.82 0.24 -42.71 16 19 Si 0.98 38.87 29.59 68.60 2.03 40.91 16 20 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 23 C -0.14 -7.25 8.13 22.94 0.19 -7.06 16 24 H 0.10 1.57 7.74 -2.39 -0.02 1.55 16 25 H 0.09 1.59 7.76 -2.39 -0.02 1.57 16 26 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.15 2.91 5.88 -2.91 -0.02 2.90 16 28 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 29 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 30 H 0.12 4.19 8.04 -2.91 -0.02 4.16 16 31 H 0.13 5.11 7.06 -2.91 -0.02 5.09 16 32 H 0.13 5.22 8.06 -2.91 -0.02 5.20 16 33 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 34 H 0.11 6.28 6.16 -2.91 -0.02 6.26 16 Total: -1.00 -65.37 306.62 6.17 -59.20 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 1.12 Total: 23.38 kcal Atomic # 6 Polarization: -69.64 SS G_CDS: 3.12 Total: -66.52 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.24 Total: -42.71 kcal Atomic # 9 Polarization: -9.12 SS G_CDS: 0.75 Total: -8.37 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.91 kcal Atomic # 16 Polarization: -4.80 SS G_CDS: -1.09 Total: -5.89 kcal Total: -65.37 6.17 -59.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242946564.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.620 kcal (2) G-P(sol) polarization free energy of solvation -65.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds