Wall clock time and date at job start Tue Mar 31 2020 06:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76200 * 102.99887 * 2 1 4 4 C 1.38843 * 120.14465 * 0.02562 * 3 2 1 5 5 C 1.38108 * 120.04171 * 180.02562 * 4 3 2 6 6 C 1.38432 * 120.32921 * 359.97438 * 5 4 3 7 7 C 1.38034 * 120.28882 * 359.97239 * 6 5 4 8 8 C 1.39262 * 119.95283 * 359.79636 * 7 6 5 9 9 C 1.48299 * 120.16144 * 180.25074 * 8 7 6 10 10 C 1.39632 * 120.01757 * 64.95759 * 9 8 7 11 11 C 1.38465 * 120.41111 * 179.69358 * 10 9 8 12 12 C 1.37658 * 120.45447 * 0.60370 * 11 10 9 13 13 C 1.40759 * 120.03241 * 359.67372 * 12 11 10 14 14 C 1.41318 * 120.20925 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00334 * 204.66487 * 14 13 12 16 16 C 1.39928 * 119.99847 * 24.65544 * 14 13 12 17 17 N 1.30855 * 120.00037 * 17.80347 * 16 14 13 18 18 Si 1.86806 * 120.00074 * 197.79512 * 16 14 13 19 19 H 1.48500 * 109.46829 * 60.00849 * 18 16 14 20 20 H 1.48502 * 109.47091 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47130 * 300.00844 * 18 16 14 22 22 C 1.39107 * 120.02072 * 245.22619 * 9 8 7 23 23 F 1.35097 * 120.22614 * 0.02945 * 22 9 8 24 24 H 1.08997 * 109.47180 * 60.00210 * 1 2 3 25 25 H 1.08993 * 109.47082 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46693 * 179.97438 * 1 2 3 27 27 H 1.08007 * 119.98114 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.83853 * 179.97438 * 5 4 3 29 29 H 1.08000 * 119.85896 * 180.02562 * 6 5 4 30 30 H 1.07999 * 120.02387 * 180.02562 * 7 6 5 31 31 H 1.07992 * 119.79475 * 359.96963 * 10 9 8 32 32 H 1.07996 * 119.77195 * 180.29889 * 11 10 9 33 33 H 1.08007 * 119.98419 * 179.69502 * 12 11 10 34 34 H 0.96998 * 119.99797 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1973 2.6663 0.0005 5 6 1.5104 4.0114 0.0000 6 6 2.8326 4.4214 -0.0005 7 6 3.8505 3.4892 0.0000 8 6 3.5484 2.1297 0.0054 9 6 4.6384 1.1242 0.0117 10 6 5.4970 1.0315 1.1089 11 6 6.5134 0.0914 1.1261 12 6 6.6987 -0.7556 0.0568 13 6 5.8478 -0.6747 -1.0616 14 6 6.0342 -1.5427 -2.1611 15 1 5.6862 -1.2542 -3.1419 16 6 6.6698 -2.7759 -1.9790 17 7 6.7793 -3.2845 -0.7783 18 14 7.3619 -3.6962 -3.4499 19 1 8.3893 -2.8585 -4.1192 20 1 7.9796 -4.9669 -2.9928 21 1 6.2665 -3.9949 -4.4070 22 6 4.8096 0.2765 -1.0779 23 9 3.9858 0.3657 -2.1449 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.1637 2.3528 0.0014 28 1 0.7198 4.7471 0.0000 29 1 3.0688 5.4753 -0.0005 30 1 4.8806 3.8138 0.0000 31 1 5.3646 1.6941 1.9513 32 1 7.1685 0.0255 1.9822 33 1 7.4970 -1.4827 0.0762 34 1 7.2196 -4.1396 -0.6522 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242946903.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:56 Heat of formation + Delta-G solvation = -7.209253 kcal Electronic energy + Delta-G solvation = -19858.103572 eV Core-core repulsion = 16760.831856 eV Total energy + Delta-G solvation = -3097.271716 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.14781 -38.83770 -37.05663 -33.92312 -31.70008 -30.99627 -29.62694 -28.58959 -27.85069 -25.32896 -22.75276 -22.41727 -20.71108 -20.27439 -17.69027 -16.90718 -15.99422 -15.61423 -15.36838 -14.93847 -14.49171 -14.34178 -13.90571 -13.80500 -13.66870 -13.51973 -12.84394 -12.77425 -12.46374 -12.26729 -11.82354 -11.70658 -11.45838 -11.15972 -11.04569 -10.95136 -10.66380 -10.42632 -9.91111 -9.74786 -9.49237 -9.38082 -9.24013 -8.56789 -7.51914 -7.29322 -6.86701 -6.82014 -4.40601 1.51987 1.61108 1.93659 2.66372 2.72660 2.87541 3.05100 3.08511 3.16790 3.90187 4.01286 4.51035 5.09685 5.14296 5.20780 5.22676 5.30573 5.46267 5.65306 5.68669 5.81312 5.91622 6.04277 6.21173 6.28533 6.51372 6.57519 6.69223 6.80820 6.87045 7.08165 7.14789 7.20821 7.48571 7.59249 7.90234 7.96772 8.06749 8.51429 8.72742 8.81972 10.11438 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.021128 B = 0.005517 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.912182 B = 5073.861448 C = 5575.469117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 S -0.064 6.064 3 C -0.076 4.076 4 C -0.140 4.140 5 C -0.114 4.114 6 C -0.131 4.131 7 C -0.093 4.093 8 C 0.001 3.999 9 C -0.074 4.074 10 C -0.196 4.196 11 C -0.113 4.113 12 C -0.142 4.142 13 C 0.085 3.915 14 C -0.453 4.453 15 H 0.082 0.918 16 C 0.078 3.922 17 N -0.789 5.789 18 Si 0.911 3.089 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.264 1.264 22 C 0.008 3.992 23 F -0.152 7.152 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.126 0.874 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.183 7.300 2.256 10.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.334 4.334 2 S 0.181 5.819 3 C -0.189 4.189 4 C -0.164 4.164 5 C -0.134 4.134 6 C -0.152 4.152 7 C -0.113 4.113 8 C -0.005 4.005 9 C -0.076 4.076 10 C -0.216 4.216 11 C -0.131 4.131 12 C -0.162 4.162 13 C 0.082 3.918 14 C -0.481 4.481 15 H 0.100 0.900 16 C -0.141 4.141 17 N -0.414 5.414 18 Si 0.735 3.265 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.188 1.188 22 C -0.013 4.013 23 F -0.131 7.131 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.122 0.878 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.143 0.857 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.525 5.964 2.339 9.144 hybrid contribution -0.747 0.656 -0.711 1.222 sum -7.272 6.620 1.628 9.967 Atomic orbital electron populations 1.23759 0.98373 1.06523 1.04749 1.86522 1.02112 1.01940 1.91300 1.21968 0.95827 0.97148 1.03944 1.21005 0.97703 0.93209 1.04522 1.20911 0.96425 0.94984 1.01032 1.21008 0.92737 0.99128 1.02328 1.21200 0.99440 0.91550 0.99101 1.18531 0.90720 0.93235 0.97969 1.18197 0.96704 0.96960 0.95718 1.20168 0.99865 1.03771 0.97791 1.20624 0.97894 0.96549 0.98048 1.21236 1.00508 1.00420 0.93993 1.17531 0.89262 0.90808 0.94233 1.19451 1.32662 1.00127 0.95906 0.89994 1.25884 0.93697 0.97414 0.97098 1.69815 1.31570 1.16893 1.23126 0.86308 0.80057 0.78465 0.81642 1.18695 1.20226 1.18849 1.17760 0.94120 1.03823 0.85619 1.91300 1.71078 1.95940 1.54787 0.90304 0.90471 0.87826 0.86331 0.86402 0.86229 0.85569 0.88538 0.88581 0.85661 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 9.15 101.05 0.92 -1.22 16 2 S -0.06 -1.21 20.11 -107.50 -2.16 -3.38 16 3 C -0.08 -1.43 5.96 -38.69 -0.23 -1.66 16 4 C -0.14 -2.17 9.36 -39.41 -0.37 -2.54 16 5 C -0.11 -1.58 10.03 -39.56 -0.40 -1.97 16 6 C -0.13 -1.88 10.03 -39.58 -0.40 -2.28 16 7 C -0.09 -1.60 9.73 -39.28 -0.38 -1.98 16 8 C 0.00 0.03 5.01 -104.71 -0.52 -0.50 16 9 C -0.07 -1.71 4.61 -104.92 -0.48 -2.19 16 10 C -0.20 -4.34 9.73 -38.98 -0.38 -4.72 16 11 C -0.11 -2.55 10.01 -39.71 -0.40 -2.95 16 12 C -0.14 -3.60 8.69 -38.84 -0.34 -3.94 16 13 C 0.08 2.28 5.57 -106.80 -0.60 1.68 16 14 C -0.45 -12.16 8.78 -37.78 -0.33 -12.49 16 15 H 0.08 2.19 7.74 -52.49 -0.41 1.78 16 16 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 17 N -0.79 -20.03 10.96 55.55 0.61 -19.42 16 18 Si 0.91 18.65 29.60 -169.99 -5.03 13.62 16 19 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 21 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 22 C 0.01 0.19 6.38 -38.28 -0.24 -0.05 16 23 F -0.15 -3.94 15.38 2.25 0.03 -3.90 16 24 H 0.08 0.94 7.75 -51.93 -0.40 0.54 16 25 H 0.08 0.88 7.75 -51.93 -0.40 0.47 16 26 H 0.10 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.12 1.54 5.88 -52.48 -0.31 1.23 16 28 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 31 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.13 3.23 6.16 -52.48 -0.32 2.90 16 34 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 LS Contribution 307.54 15.07 4.63 4.63 Total: -1.00 -28.56 307.54 -9.66 -38.22 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -3.51 Total: 5.19 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: -4.23 Total: -34.97 kcal Atomic # 7 Polarization: -20.03 SS G_CDS: 0.61 Total: -19.42 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.03 Total: -3.90 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -2.16 Total: -3.38 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.56 -9.66 -38.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242946903.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.011 kcal (2) G-P(sol) polarization free energy of solvation -28.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds