Wall clock time and date at job start Tue Mar 31 2020 06:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76200 * 102.99887 * 2 1 4 4 C 1.38843 * 120.14465 * 0.02562 * 3 2 1 5 5 C 1.38108 * 120.04171 * 180.02562 * 4 3 2 6 6 C 1.38432 * 120.32921 * 359.97438 * 5 4 3 7 7 C 1.38034 * 120.28882 * 359.97239 * 6 5 4 8 8 C 1.39262 * 119.95283 * 359.79636 * 7 6 5 9 9 C 1.48299 * 120.16144 * 180.25074 * 8 7 6 10 10 C 1.39632 * 120.01757 * 64.95759 * 9 8 7 11 11 C 1.38465 * 120.41111 * 179.69358 * 10 9 8 12 12 C 1.37658 * 120.45447 * 0.60370 * 11 10 9 13 13 C 1.40759 * 120.03241 * 359.67372 * 12 11 10 14 14 C 1.41318 * 120.20925 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00334 * 204.66487 * 14 13 12 16 16 C 1.39928 * 119.99847 * 24.65544 * 14 13 12 17 17 N 1.30855 * 120.00037 * 17.80347 * 16 14 13 18 18 Si 1.86806 * 120.00074 * 197.79512 * 16 14 13 19 19 H 1.48500 * 109.46829 * 60.00849 * 18 16 14 20 20 H 1.48502 * 109.47091 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47130 * 300.00844 * 18 16 14 22 22 C 1.39107 * 120.02072 * 245.22619 * 9 8 7 23 23 F 1.35097 * 120.22614 * 0.02945 * 22 9 8 24 24 H 1.08997 * 109.47180 * 60.00210 * 1 2 3 25 25 H 1.08993 * 109.47082 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46693 * 179.97438 * 1 2 3 27 27 H 1.08007 * 119.98114 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.83853 * 179.97438 * 5 4 3 29 29 H 1.08000 * 119.85896 * 180.02562 * 6 5 4 30 30 H 1.07999 * 120.02387 * 180.02562 * 7 6 5 31 31 H 1.07992 * 119.79475 * 359.96963 * 10 9 8 32 32 H 1.07996 * 119.77195 * 180.29889 * 11 10 9 33 33 H 1.08007 * 119.98419 * 179.69502 * 12 11 10 34 34 H 0.96998 * 119.99797 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1973 2.6663 0.0005 5 6 1.5104 4.0114 0.0000 6 6 2.8326 4.4214 -0.0005 7 6 3.8505 3.4892 0.0000 8 6 3.5484 2.1297 0.0054 9 6 4.6384 1.1242 0.0117 10 6 5.4970 1.0315 1.1089 11 6 6.5134 0.0914 1.1261 12 6 6.6987 -0.7556 0.0568 13 6 5.8478 -0.6747 -1.0616 14 6 6.0342 -1.5427 -2.1611 15 1 5.6862 -1.2542 -3.1419 16 6 6.6698 -2.7759 -1.9790 17 7 6.7793 -3.2845 -0.7783 18 14 7.3619 -3.6962 -3.4499 19 1 8.3893 -2.8585 -4.1192 20 1 7.9796 -4.9669 -2.9928 21 1 6.2665 -3.9949 -4.4070 22 6 4.8096 0.2765 -1.0779 23 9 3.9858 0.3657 -2.1449 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.1637 2.3528 0.0014 28 1 0.7198 4.7471 0.0000 29 1 3.0688 5.4753 -0.0005 30 1 4.8806 3.8138 0.0000 31 1 5.3646 1.6941 1.9513 32 1 7.1685 0.0255 1.9822 33 1 7.4970 -1.4827 0.0762 34 1 7.2196 -4.1396 -0.6522 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242946903.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:56 Heat of formation + Delta-G solvation = -20.255211 kcal Electronic energy + Delta-G solvation = -19858.669287 eV Core-core repulsion = 16760.831856 eV Total energy + Delta-G solvation = -3097.837432 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.10987 -40.19835 -38.79375 -35.75510 -33.23748 -32.20643 -31.50417 -29.67172 -29.44865 -27.24897 -24.25903 -23.68491 -22.52919 -21.91297 -19.35444 -18.37636 -17.88136 -17.17814 -17.01907 -16.48648 -16.21965 -15.78850 -15.58472 -15.26985 -14.89349 -14.66106 -14.61509 -14.30734 -13.78818 -13.65910 -13.47277 -13.32989 -13.10325 -12.82760 -12.56081 -12.54532 -12.18368 -12.02144 -11.72684 -11.45383 -11.10598 -10.91628 -10.63092 -9.92248 -9.39605 -9.09116 -8.69031 -8.29769 -6.40091 0.20712 0.36321 0.66272 0.85442 0.93242 1.35799 1.46679 1.50199 1.65395 2.18795 2.62295 2.78066 3.51366 3.80437 3.96736 4.03665 4.20322 4.25042 4.26238 4.45950 4.50821 4.55751 4.67935 4.79204 4.81617 4.94566 5.06005 5.17229 5.27184 5.33629 5.48593 5.52428 5.66081 5.75246 5.99013 6.02894 6.04458 6.18198 6.56319 6.78357 6.89102 8.27062 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.021128 B = 0.005517 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.912182 B = 5073.861448 C = 5575.469117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.169 6.169 3 C -0.084 4.084 4 C -0.141 4.141 5 C -0.100 4.100 6 C -0.122 4.122 7 C -0.103 4.103 8 C -0.043 4.043 9 C -0.062 4.062 10 C -0.196 4.196 11 C -0.109 4.109 12 C -0.165 4.165 13 C 0.056 3.944 14 C -0.494 4.494 15 H 0.067 0.933 16 C 0.041 3.959 17 N -0.817 5.817 18 Si 0.982 3.018 19 H -0.258 1.258 20 H -0.260 1.260 21 H -0.264 1.264 22 C -0.020 4.020 23 F -0.162 7.162 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.117 0.883 27 H 0.146 0.854 28 H 0.163 0.837 29 H 0.159 0.841 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.818 9.392 2.819 13.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.075 5.925 3 C -0.197 4.197 4 C -0.165 4.165 5 C -0.120 4.120 6 C -0.142 4.142 7 C -0.123 4.123 8 C -0.049 4.049 9 C -0.064 4.064 10 C -0.215 4.215 11 C -0.128 4.128 12 C -0.185 4.185 13 C 0.053 3.947 14 C -0.523 4.523 15 H 0.085 0.915 16 C -0.175 4.175 17 N -0.442 5.442 18 Si 0.803 3.197 19 H -0.183 1.183 20 H -0.183 1.183 21 H -0.189 1.189 22 C -0.040 4.040 23 F -0.142 7.142 24 H 0.111 0.889 25 H 0.117 0.883 26 H 0.136 0.864 27 H 0.163 0.837 28 H 0.180 0.820 29 H 0.177 0.823 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.132 0.868 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.159 8.077 2.922 11.847 hybrid contribution -0.408 0.183 -0.783 0.902 sum -8.567 8.260 2.138 12.091 Atomic orbital electron populations 1.23762 0.92357 1.08045 1.06414 1.86775 1.08950 1.04833 1.91957 1.21965 0.96136 0.96451 1.05139 1.21409 0.98202 0.93478 1.03410 1.21467 0.97450 0.94999 0.98074 1.21453 0.92243 1.00450 1.00085 1.21374 1.00809 0.90790 0.99334 1.18603 0.90604 0.93855 1.01791 1.18513 0.97021 0.96444 0.94417 1.20557 0.99119 1.03562 0.98239 1.20954 0.98236 0.95553 0.98028 1.21212 1.00770 1.01550 0.94921 1.17899 0.90162 0.91614 0.95018 1.19581 1.35393 1.01840 0.95495 0.91520 1.26684 0.93194 0.97496 1.00119 1.69846 1.31878 1.17583 1.24896 0.85253 0.79168 0.77578 0.77747 1.18267 1.18336 1.18884 1.18009 0.94362 1.05129 0.86516 1.91246 1.71399 1.96096 1.55409 0.88919 0.88269 0.86429 0.83686 0.81962 0.82345 0.85174 0.85817 0.85562 0.86771 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.15 113.37 1.04 -2.27 16 2 S -0.17 -6.57 20.11 -56.49 -1.14 -7.71 16 3 C -0.08 -3.11 5.96 22.85 0.14 -2.98 16 4 C -0.14 -3.92 9.36 22.38 0.21 -3.71 16 5 C -0.10 -2.29 10.03 22.28 0.22 -2.06 16 6 C -0.12 -2.99 10.03 22.27 0.22 -2.76 16 7 C -0.10 -3.38 9.73 22.47 0.22 -3.16 16 8 C -0.04 -1.73 5.01 -19.92 -0.10 -1.83 16 9 C -0.06 -2.95 4.61 -20.05 -0.09 -3.05 16 10 C -0.20 -8.69 9.73 22.66 0.22 -8.47 16 11 C -0.11 -5.04 10.01 22.19 0.22 -4.82 16 12 C -0.16 -8.76 8.69 22.75 0.20 -8.57 16 13 C 0.06 3.19 5.57 -21.27 -0.12 3.07 16 14 C -0.49 -28.28 8.78 23.44 0.21 -28.08 16 15 H 0.07 3.85 7.74 -2.91 -0.02 3.82 16 16 C 0.04 2.12 5.14 85.25 0.44 2.56 16 17 N -0.82 -43.07 10.96 21.82 0.24 -42.83 16 18 Si 0.98 39.35 29.60 68.60 2.03 41.38 16 19 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 20 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 22 C -0.02 -1.06 6.38 23.11 0.15 -0.92 16 23 F -0.16 -8.95 15.38 44.97 0.69 -8.26 16 24 H 0.09 1.97 7.75 -2.39 -0.02 1.95 16 25 H 0.10 1.94 7.75 -2.39 -0.02 1.92 16 26 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.15 3.16 5.88 -2.91 -0.02 3.14 16 28 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 30 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 31 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 32 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 33 H 0.11 6.20 6.16 -2.91 -0.02 6.18 16 34 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 Total: -1.00 -67.57 307.54 6.11 -61.46 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 1.12 Total: 23.00 kcal Atomic # 6 Polarization: -70.21 SS G_CDS: 3.17 Total: -67.04 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.24 Total: -42.83 kcal Atomic # 9 Polarization: -8.95 SS G_CDS: 0.69 Total: -8.26 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Atomic # 16 Polarization: -6.57 SS G_CDS: -1.14 Total: -7.71 kcal Total: -67.57 6.11 -61.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242946903.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.204 kcal (2) G-P(sol) polarization free energy of solvation -67.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds