Wall clock time and date at job start Tue Mar 31 2020 05:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76200 * 102.99935 * 2 1 4 4 C 1.39077 * 120.43970 * 359.97438 * 3 2 1 5 5 N 1.31801 * 120.92654 * 180.02562 * 4 3 2 6 6 C 1.31746 * 121.94715 * 359.96918 * 5 4 3 7 7 C 1.39408 * 120.76230 * 0.02562 * 6 5 4 8 8 C 1.48308 * 120.49805 * 179.97438 * 7 6 5 9 9 C 1.39415 * 119.64943 * 5.00049 * 8 7 6 10 10 C 1.38218 * 119.14794 * 180.22413 * 9 8 7 11 11 C 1.39430 * 118.45110 * 359.51382 * 10 9 8 12 12 O 1.35715 * 120.38340 * 180.21396 * 11 10 9 13 13 C 1.34814 * 117.00421 * 354.81117 * 12 11 10 14 14 H 1.07995 * 119.99772 * 5.08187 * 13 12 11 15 15 C 1.38651 * 120.00052 * 185.07342 * 13 12 11 16 16 N 1.31551 * 120.00054 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99879 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.47204 * 90.00245 * 17 15 13 19 19 H 1.48500 * 109.47187 * 209.99606 * 17 15 13 20 20 H 1.48498 * 109.47493 * 329.99968 * 17 15 13 21 21 C 1.38953 * 119.22488 * 0.48952 * 11 10 9 22 22 N 1.31661 * 120.78759 * 359.74912 * 21 11 10 23 23 C 1.39125 * 120.43447 * 180.23446 * 3 2 1 24 24 H 1.09004 * 109.46854 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47224 * 299.99987 * 1 2 3 26 26 H 1.09002 * 109.47153 * 60.00163 * 1 2 3 27 27 H 1.08001 * 119.53068 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.61780 * 179.97438 * 6 5 4 29 29 H 1.08000 * 120.42912 * 359.95396 * 9 8 7 30 30 H 1.08004 * 120.77959 * 179.74516 * 10 9 8 31 31 H 0.97006 * 119.99985 * 179.97438 * 16 15 13 32 32 H 1.08000 * 119.60612 * 179.72521 * 21 11 10 33 33 H 1.07997 * 120.88124 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.2005 2.6731 -0.0005 5 7 1.4860 3.9598 -0.0010 6 6 2.7284 4.3982 -0.0005 7 6 3.7994 3.5058 0.0002 8 6 5.1957 4.0057 0.0002 9 6 5.4381 5.3746 0.1053 10 6 6.7433 5.8295 0.0996 11 6 7.7724 4.8941 -0.0013 12 8 9.0683 5.2971 -0.0062 13 6 9.2961 6.6258 -0.0188 14 1 8.4692 7.3161 0.0583 15 6 10.5920 7.1060 -0.1306 16 7 10.8143 8.4025 -0.1424 17 14 12.0222 5.9118 -0.2645 18 1 12.2778 5.6039 -1.6946 19 1 13.2355 6.5235 0.3345 20 1 11.6904 4.6588 0.4600 21 6 7.4554 3.5450 -0.1026 22 7 6.2009 3.1454 -0.0992 23 6 3.5376 2.1337 -0.0049 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.1678 2.3568 -0.0014 28 1 2.9194 5.4611 -0.0013 29 1 4.6166 6.0710 0.1856 30 1 6.9612 6.8846 0.1754 31 1 11.7210 8.7385 -0.2203 32 1 8.2475 2.8156 -0.1856 33 1 4.3442 1.4155 -0.0092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242948881.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:22 Heat of formation + Delta-G solvation = 27.107940 kcal Electronic energy + Delta-G solvation = -18773.036370 eV Core-core repulsion = 15697.172720 eV Total energy + Delta-G solvation = -3075.863650 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.71056 -40.82324 -39.10914 -34.67880 -34.03756 -33.54683 -32.79365 -30.58588 -29.55477 -27.47193 -25.46990 -25.01798 -23.76099 -22.78962 -20.05415 -19.41890 -18.72989 -17.97486 -17.75737 -16.87968 -16.69634 -16.22438 -16.08215 -15.40687 -15.35806 -15.15924 -14.71860 -14.53185 -14.44064 -14.18240 -14.05677 -13.97931 -13.58520 -13.33137 -12.80509 -12.76670 -12.15921 -11.74820 -11.71592 -11.50074 -11.17322 -10.86450 -10.61645 -10.58885 -10.44141 -9.08433 -8.57720 -8.48093 -6.29897 -0.52567 0.03426 0.28281 0.45785 0.71113 1.33474 1.36544 1.43140 1.52398 2.24325 2.50265 2.76080 2.83765 3.11248 3.16988 3.46393 3.67566 3.75522 3.88862 3.95584 4.14558 4.21971 4.30190 4.32974 4.36915 4.42493 4.79471 4.83478 4.92044 5.01794 5.15260 5.24397 5.43530 5.49565 5.64331 5.91606 6.74525 6.80965 6.93157 7.40346 8.52339 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.040982 B = 0.003059 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.062618 B = 9150.377486 C = 9814.256916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.125 6.125 3 C -0.142 4.142 4 C 0.082 3.918 5 N -0.476 5.476 6 C 0.096 3.904 7 C -0.058 4.058 8 C 0.066 3.934 9 C -0.094 4.094 10 C -0.190 4.190 11 C 0.089 3.911 12 O -0.220 6.220 13 C -0.405 4.405 14 H 0.090 0.910 15 C 0.018 3.982 16 N -0.911 5.911 17 Si 0.967 3.033 18 H -0.265 1.265 19 H -0.268 1.268 20 H -0.258 1.258 21 C 0.041 3.959 22 N -0.441 5.441 23 C -0.046 4.046 24 H 0.130 0.870 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.184 0.816 28 H 0.180 0.820 29 H 0.165 0.835 30 H 0.137 0.863 31 H 0.288 0.712 32 H 0.173 0.827 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.900 -13.778 0.251 23.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.115 5.885 3 C -0.256 4.256 4 C -0.081 4.081 5 N -0.184 5.184 6 C -0.064 4.064 7 C -0.062 4.062 8 C -0.070 4.070 9 C -0.113 4.113 10 C -0.216 4.216 11 C 0.036 3.964 12 O -0.125 6.125 13 C -0.481 4.481 14 H 0.107 0.893 15 C -0.183 4.183 16 N -0.549 5.549 17 Si 0.789 3.211 18 H -0.190 1.190 19 H -0.193 1.193 20 H -0.182 1.182 21 C -0.121 4.121 22 N -0.150 5.150 23 C -0.078 4.078 24 H 0.149 0.851 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.201 0.799 28 H 0.196 0.804 29 H 0.182 0.818 30 H 0.155 0.845 31 H 0.098 0.902 32 H 0.190 0.810 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.761 -15.036 0.177 24.043 hybrid contribution 1.075 1.670 0.031 1.986 sum -17.685 -13.366 0.208 22.169 Atomic orbital electron populations 1.23862 0.91005 1.09063 1.06977 1.85711 1.10408 1.00213 1.92134 1.22900 0.96943 0.99742 1.06026 1.23292 0.99728 0.87634 0.97488 1.67657 1.21777 1.17042 1.11920 1.23125 0.86393 1.00964 0.95938 1.19368 0.91595 0.93936 1.01343 1.19377 0.91540 0.89933 1.06177 1.22048 0.96779 0.95721 0.96771 1.21729 0.92826 1.00919 1.06127 1.20726 0.84748 0.95374 0.95544 1.83522 1.21697 1.25904 1.81352 1.20765 0.96034 0.78593 1.52680 0.89280 1.25269 1.00336 0.97706 0.94960 1.69706 1.23932 1.13217 1.48093 0.85266 0.77371 0.78996 0.79509 1.18997 1.19283 1.18203 1.22051 0.93662 0.91434 1.04924 1.67428 0.98961 1.38250 1.10359 1.21351 0.95428 0.95428 0.95585 0.85139 0.88383 0.88404 0.79937 0.80363 0.81767 0.84509 0.90216 0.81039 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.16 113.37 1.04 -0.13 16 2 S -0.13 -2.26 22.58 -56.49 -1.28 -3.53 16 3 C -0.14 -3.25 6.13 22.68 0.14 -3.11 16 4 C 0.08 1.72 10.54 84.90 0.89 2.61 16 5 N -0.48 -11.74 10.34 -194.32 -2.01 -13.75 16 6 C 0.10 2.44 10.58 84.99 0.90 3.34 16 7 C -0.06 -1.67 5.89 -19.97 -0.12 -1.79 16 8 C 0.07 2.21 6.73 41.98 0.28 2.49 16 9 C -0.09 -3.06 9.45 22.55 0.21 -2.84 16 10 C -0.19 -7.58 9.25 22.55 0.21 -7.37 16 11 C 0.09 3.89 6.67 22.73 0.15 4.05 16 12 O -0.22 -11.02 8.59 -22.18 -0.19 -11.21 16 13 C -0.40 -22.06 9.95 67.92 0.68 -21.38 16 14 H 0.09 5.01 5.48 -2.91 -0.02 4.99 16 15 C 0.02 0.97 5.49 84.83 0.47 1.44 16 16 N -0.91 -51.32 13.96 21.61 0.30 -51.02 16 17 Si 0.97 42.51 28.62 68.60 1.96 44.48 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 20 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 21 C 0.04 1.58 11.14 84.89 0.95 2.52 16 22 N -0.44 -16.05 9.50 -184.32 -1.75 -17.80 16 23 C -0.05 -1.28 9.45 22.83 0.22 -1.06 16 24 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.10 0.63 7.76 -2.39 -0.02 0.62 16 26 H 0.10 0.64 7.76 -2.39 -0.02 0.62 16 27 H 0.18 2.54 5.89 -2.91 -0.02 2.52 16 28 H 0.18 3.68 6.22 -2.91 -0.02 3.66 16 29 H 0.16 4.02 6.23 -2.91 -0.02 4.00 16 30 H 0.14 5.72 5.75 -2.91 -0.02 5.71 16 31 H 0.29 14.89 8.31 -92.70 -0.77 14.12 16 32 H 0.17 5.83 8.06 -2.91 -0.02 5.81 16 33 H 0.14 4.06 7.63 -2.91 -0.02 4.04 16 Total: -1.00 -63.14 302.58 4.21 -58.92 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 1.16 Total: 15.14 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 6.01 Total: -21.23 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -3.46 Total: -82.57 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.19 Total: -11.21 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.96 Total: 44.48 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -1.28 Total: -3.53 kcal Total: -63.14 4.21 -58.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242948881.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.032 kcal (2) G-P(sol) polarization free energy of solvation -63.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds