Wall clock time and date at job start Tue Mar 31 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76199 * 102.99595 * 2 1 4 4 C 1.39003 * 119.96927 * 0.02562 * 3 2 1 5 5 C 1.37871 * 120.06855 * 179.97438 * 4 3 2 6 6 C 1.39406 * 119.99638 * 0.02562 * 5 4 3 7 7 C 1.48347 * 120.03671 * 179.97438 * 6 5 4 8 8 C 1.39763 * 120.00297 * 179.74699 * 7 6 5 9 9 C 1.38384 * 120.37350 * 179.71262 * 8 7 6 10 10 C 1.37728 * 120.37902 * 0.56174 * 9 8 7 11 11 C 1.40764 * 119.99804 * 359.72198 * 10 9 8 12 12 C 1.41420 * 120.18507 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00001 * 154.78142 * 12 11 10 14 14 C 1.39927 * 120.00076 * 334.78896 * 12 11 10 15 15 N 1.30830 * 119.99945 * 342.74512 * 14 12 11 16 16 Si 1.86806 * 120.00079 * 162.75033 * 14 12 11 17 17 H 1.48497 * 109.47079 * 89.99692 * 16 14 12 18 18 H 1.48499 * 109.47177 * 209.99791 * 16 14 12 19 19 H 1.48497 * 109.47010 * 329.99600 * 16 14 12 20 20 C 1.38760 * 120.00083 * 0.02562 * 7 6 5 21 21 C 1.39433 * 119.93128 * 359.97438 * 6 5 4 22 22 C 1.38006 * 119.93457 * 0.27804 * 21 6 5 23 23 F 1.35094 * 120.00071 * 179.72377 * 22 21 6 24 24 H 1.08997 * 109.47065 * 299.99783 * 1 2 3 25 25 H 1.09002 * 109.47014 * 59.99984 * 1 2 3 26 26 H 1.09000 * 109.46839 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.96922 * 0.02562 * 4 3 2 28 28 H 1.08001 * 120.00117 * 180.02562 * 5 4 3 29 29 H 1.07996 * 119.81422 * 0.02562 * 8 7 6 30 30 H 1.07995 * 119.80937 * 180.25641 * 9 8 7 31 31 H 1.08002 * 119.99960 * 179.69413 * 10 9 8 32 32 H 0.97006 * 120.00022 * 180.02562 * 15 14 12 33 33 H 1.08007 * 120.19014 * 0.02901 * 20 7 6 34 34 H 1.07998 * 120.03185 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1931 2.6642 0.0005 5 6 1.5008 4.0082 0.0011 6 6 2.8333 4.4181 0.0005 7 6 3.1654 5.8639 0.0005 8 6 4.5015 6.2741 0.0053 9 6 4.8200 7.6207 -0.0006 10 6 3.8241 8.5721 0.0003 11 6 2.4731 8.1767 0.0014 12 6 1.4473 9.1502 0.0018 13 1 0.4729 8.9080 -0.3959 14 6 1.6949 10.4272 0.5174 15 7 2.7291 10.6306 1.2924 16 14 0.5486 11.8417 0.0992 17 1 -0.5365 11.9150 1.1103 18 1 1.3128 13.1150 0.1000 19 1 -0.0417 11.6196 -1.2452 20 6 2.1495 6.8091 0.0016 21 6 3.8535 3.4677 0.0000 22 6 3.5423 2.1232 -0.0058 23 9 4.5297 1.2013 -0.0120 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.1606 2.3473 0.0014 28 1 0.7096 4.7433 0.0019 29 1 5.2897 5.5359 0.0086 30 1 5.8555 7.9275 -0.0010 31 1 4.0797 9.6214 0.0006 32 1 2.9006 11.5158 1.6501 33 1 1.1159 6.4957 0.0029 34 1 4.8863 3.7834 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242975874.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:08 Heat of formation + Delta-G solvation = -19.819771 kcal Electronic energy + Delta-G solvation = -18951.508060 eV Core-core repulsion = 15853.689511 eV Total energy + Delta-G solvation = -3097.818549 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.99225 -40.46876 -38.81043 -35.66585 -33.37439 -32.24490 -31.50226 -29.94100 -29.41587 -27.22208 -24.66736 -24.04540 -22.06736 -21.91479 -19.49611 -18.78899 -17.75064 -17.48621 -17.30172 -16.76340 -16.51382 -15.92413 -15.52090 -15.18989 -15.05964 -14.57835 -14.54475 -14.32195 -14.06925 -13.91541 -13.40574 -13.35693 -13.21260 -12.89664 -12.77087 -12.57163 -12.27172 -12.10994 -11.59721 -11.28912 -11.21798 -11.18547 -10.88424 -9.94236 -9.43130 -9.26561 -8.64157 -8.21284 -6.35703 -0.33374 0.12486 0.44843 0.97833 1.18080 1.40005 1.41677 1.50198 1.55808 2.21428 2.48315 2.84698 3.08029 3.62908 3.74450 3.79821 4.07302 4.18800 4.28931 4.31563 4.43854 4.45150 4.72024 4.79142 4.88019 4.91648 4.92370 5.09289 5.12583 5.17155 5.33402 5.53251 5.65516 5.75441 5.96400 6.06104 6.13995 6.33896 6.66380 6.92874 6.99477 8.34000 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.027700 B = 0.003543 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.589266 B = 7902.003514 C = 8824.584265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.133 6.133 3 C -0.138 4.138 4 C -0.094 4.094 5 C -0.110 4.110 6 C -0.010 4.010 7 C -0.043 4.043 8 C -0.222 4.222 9 C -0.110 4.110 10 C -0.181 4.181 11 C 0.078 3.922 12 C -0.500 4.500 13 H 0.079 0.921 14 C 0.036 3.964 15 N -0.828 5.828 16 Si 0.980 3.020 17 H -0.262 1.262 18 H -0.269 1.269 19 H -0.258 1.258 20 C -0.214 4.214 21 C -0.139 4.139 22 C 0.101 3.899 23 F -0.137 7.137 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.131 0.869 27 H 0.166 0.834 28 H 0.143 0.857 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.288 0.712 33 H 0.111 0.889 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.907 -14.167 -1.965 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.108 5.892 3 C -0.251 4.251 4 C -0.117 4.117 5 C -0.129 4.129 6 C -0.012 4.012 7 C -0.043 4.043 8 C -0.241 4.241 9 C -0.129 4.129 10 C -0.201 4.201 11 C 0.076 3.924 12 C -0.529 4.529 13 H 0.097 0.903 14 C -0.179 4.179 15 N -0.454 5.454 16 Si 0.801 3.199 17 H -0.187 1.187 18 H -0.193 1.193 19 H -0.182 1.182 20 C -0.233 4.233 21 C -0.159 4.159 22 C 0.076 3.924 23 F -0.116 7.116 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.149 0.851 27 H 0.183 0.817 28 H 0.161 0.839 29 H 0.137 0.863 30 H 0.132 0.868 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.114 -15.112 -1.817 15.767 hybrid contribution -0.595 1.950 0.053 2.039 sum -4.709 -13.162 -1.764 14.090 Atomic orbital electron populations 1.23860 0.90884 1.08930 1.06947 1.85637 1.10563 1.00457 1.92556 1.21948 0.94519 0.99414 1.09233 1.21229 0.99145 0.91397 0.99961 1.21450 0.95941 0.96254 0.99297 1.18888 0.93302 0.91922 0.97101 1.18517 0.93808 0.90529 1.01427 1.20815 0.94920 0.95322 1.13009 1.20920 0.98327 0.93347 1.00269 1.21427 0.93154 0.98628 1.06850 1.17893 0.93305 0.92349 0.88858 1.19820 0.98956 0.96687 1.37484 0.90277 1.26730 0.97183 1.02163 0.91788 1.69872 1.27606 1.24971 1.22925 0.85229 0.78355 0.76377 0.79929 1.18673 1.19304 1.18197 1.21282 0.97522 0.92388 1.12119 1.21190 1.01283 0.90081 1.03353 1.17069 0.83848 0.86064 1.05429 1.91471 1.60650 1.65427 1.94043 0.88508 0.88447 0.85082 0.81709 0.83944 0.86287 0.86818 0.87981 0.90168 0.87142 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.15 113.37 1.04 -0.64 16 2 S -0.13 -2.96 22.16 -56.49 -1.25 -4.21 16 3 C -0.14 -3.78 6.12 22.70 0.14 -3.64 16 4 C -0.09 -2.36 9.35 22.37 0.21 -2.15 16 5 C -0.11 -3.36 9.41 22.46 0.21 -3.14 16 6 C -0.01 -0.34 5.88 -20.02 -0.12 -0.46 16 7 C -0.04 -1.83 5.87 -20.09 -0.12 -1.95 16 8 C -0.22 -9.45 9.43 22.67 0.21 -9.23 16 9 C -0.11 -5.05 10.01 22.18 0.22 -4.82 16 10 C -0.18 -9.40 8.69 22.77 0.20 -9.21 16 11 C 0.08 4.12 5.56 -21.32 -0.12 4.00 16 12 C -0.50 -26.27 9.05 23.46 0.21 -26.06 16 13 H 0.08 3.96 7.90 -2.91 -0.02 3.94 16 14 C 0.04 1.78 5.14 85.25 0.44 2.22 16 15 N -0.83 -42.77 10.97 21.82 0.24 -42.53 16 16 Si 0.98 37.32 29.59 68.60 2.03 39.35 16 17 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 18 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 19 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 20 C -0.21 -10.07 9.17 22.95 0.21 -9.86 16 21 C -0.14 -4.60 9.39 22.50 0.21 -4.39 16 22 C 0.10 3.15 7.27 22.46 0.16 3.31 16 23 F -0.14 -4.32 16.75 44.97 0.75 -3.56 16 24 H 0.10 1.03 7.74 -2.39 -0.02 1.01 16 25 H 0.10 1.02 7.74 -2.39 -0.02 1.00 16 26 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.17 2.88 5.86 -2.91 -0.02 2.86 16 28 H 0.14 4.15 6.18 -2.91 -0.02 4.13 16 29 H 0.12 4.35 6.17 -2.91 -0.02 4.34 16 30 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 31 H 0.10 5.55 6.18 -2.91 -0.02 5.53 16 32 H 0.29 13.45 8.30 -92.70 -0.77 12.68 16 33 H 0.11 4.75 6.18 -2.91 -0.02 4.73 16 34 H 0.15 4.54 6.18 -2.91 -0.02 4.52 16 Total: -1.00 -59.60 304.91 6.02 -53.58 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 1.14 Total: 23.39 kcal Atomic # 6 Polarization: -69.14 SS G_CDS: 3.11 Total: -66.02 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.24 Total: -42.53 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.75 Total: -3.56 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.35 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -1.25 Total: -4.21 kcal Total: -59.60 6.02 -53.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242975874.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.759 kcal (2) G-P(sol) polarization free energy of solvation -59.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds