Wall clock time and date at job start Tue Mar 31 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76202 * 103.00109 * 2 1 4 4 C 1.39202 * 119.94570 * 0.02592 * 3 2 1 5 5 C 1.37671 * 120.09029 * 179.97438 * 4 3 2 6 6 C 1.39794 * 119.96861 * 0.02562 * 5 4 3 7 7 C 1.47785 * 120.04897 * 179.97438 * 6 5 4 8 8 C 1.40054 * 119.89445 * 359.72247 * 7 6 5 9 9 C 1.36171 * 120.11301 * 179.75814 * 8 7 6 10 10 C 1.40968 * 119.88660 * 0.49778 * 9 8 7 11 11 C 1.40968 * 120.10859 * 179.74195 * 10 9 8 12 12 H 1.08001 * 119.99670 * 204.73571 * 11 10 9 13 13 C 1.39935 * 120.00305 * 24.72685 * 11 10 9 14 14 N 1.30849 * 119.99642 * 17.98488 * 13 11 10 15 15 Si 1.86799 * 120.00117 * 197.98923 * 13 11 10 16 16 H 1.48497 * 109.47157 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46884 * 120.00145 * 15 13 11 18 18 H 1.48498 * 109.46999 * 239.99732 * 15 13 11 19 19 C 1.40963 * 119.78519 * 359.75739 * 10 9 8 20 20 C 1.36178 * 119.88631 * 0.02562 * 19 10 9 21 21 C 1.39787 * 119.89366 * 359.74864 * 6 5 4 22 22 C 1.37810 * 119.91255 * 0.49650 * 21 6 5 23 23 F 1.35101 * 119.98607 * 179.77559 * 22 21 6 24 24 H 1.09001 * 109.46704 * 299.99735 * 1 2 3 25 25 H 1.08997 * 109.47207 * 59.99567 * 1 2 3 26 26 H 1.08998 * 109.47032 * 180.02562 * 1 2 3 27 27 H 1.08005 * 119.95743 * 359.95371 * 4 3 2 28 28 H 1.07991 * 120.01360 * 180.02562 * 5 4 3 29 29 H 1.08002 * 119.93758 * 0.02562 * 8 7 6 30 30 H 1.07998 * 120.06035 * 180.23293 * 9 8 7 31 31 H 0.97002 * 119.99575 * 179.97438 * 14 13 11 32 32 H 1.08005 * 120.06038 * 179.97438 * 19 10 9 33 33 H 1.08004 * 119.94886 * 179.97438 * 20 19 10 34 34 H 1.08007 * 120.04567 * 180.25518 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1915 2.6653 0.0005 5 6 1.4978 4.0075 0.0011 6 6 2.8339 4.4188 0.0005 7 6 3.1647 5.8591 0.0005 8 6 2.1377 6.8113 -0.0048 9 6 2.4374 8.1396 0.0002 10 6 3.7843 8.5557 0.0000 11 6 4.0999 9.9296 -0.0003 12 1 5.0488 10.2655 -0.3918 13 6 3.1838 10.8582 0.5063 14 7 2.2121 10.4596 1.2866 15 14 3.3481 12.6667 0.0685 16 1 4.5208 12.8557 -0.8228 17 1 2.1184 13.1207 -0.6292 18 1 3.5354 13.4612 1.3090 19 6 4.8145 7.5935 0.0000 20 6 4.5045 6.2675 -0.0005 21 6 3.8563 3.4656 0.0048 22 6 3.5444 2.1232 -0.0009 23 9 4.5314 1.2007 -0.0014 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 0.1592 2.3478 0.0002 28 1 0.7064 4.7422 0.0019 29 1 1.1061 6.4913 -0.0085 30 1 1.6447 8.8730 -0.0002 31 1 1.5773 11.1033 1.6381 32 1 5.8479 7.9074 -0.0005 33 1 5.2930 5.5294 -0.0010 34 1 4.8894 3.7806 0.0085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242977045.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:12 Heat of formation + Delta-G solvation = -11.311963 kcal Electronic energy + Delta-G solvation = -18883.127368 eV Core-core repulsion = 15785.677745 eV Total energy + Delta-G solvation = -3097.449623 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.61377 -38.90341 -37.26340 -34.12468 -31.78673 -30.76312 -29.56503 -29.08313 -28.60298 -25.50672 -22.87430 -22.52989 -20.56501 -20.20445 -17.90814 -17.52628 -16.64474 -15.99651 -15.65884 -15.37268 -14.99931 -14.48793 -14.17179 -13.79225 -13.74449 -13.49633 -13.05342 -12.80751 -12.62770 -12.41816 -12.31497 -11.99534 -11.60411 -11.41880 -11.32082 -11.10368 -10.78242 -10.61988 -10.19215 -9.91831 -9.72354 -9.52174 -9.22785 -8.57960 -7.81491 -7.73461 -7.11106 -6.86869 -4.56606 1.16999 1.54303 1.57289 2.45363 2.59321 2.91805 2.96876 2.97302 3.01249 3.70621 3.95224 4.47421 4.50428 4.93575 4.94677 4.98580 5.35304 5.41829 5.51343 5.55320 5.59834 5.91658 6.06483 6.18781 6.23741 6.43413 6.49141 6.65789 6.75195 6.83095 7.02765 7.17739 7.19680 7.38472 7.69249 7.80564 7.92463 8.01426 8.35553 8.57730 8.70226 9.83811 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.039426 B = 0.003199 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.019518 B = 8751.028246 C = 9377.025039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.123 6.123 3 C -0.171 4.171 4 C -0.090 4.090 5 C -0.142 4.142 6 C 0.058 3.942 7 C -0.217 4.217 8 C -0.069 4.069 9 C -0.174 4.174 10 C 0.121 3.879 11 C -0.438 4.438 12 H 0.085 0.915 13 C 0.072 3.928 14 N -0.772 5.772 15 Si 0.913 3.087 16 H -0.257 1.257 17 H -0.269 1.269 18 H -0.271 1.271 19 C -0.230 4.230 20 C -0.056 4.056 21 C -0.172 4.172 22 C 0.131 3.869 23 F -0.138 7.138 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.124 0.876 28 H 0.130 0.870 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.286 0.714 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 -9.982 -1.625 10.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.117 5.883 3 C -0.284 4.284 4 C -0.113 4.113 5 C -0.162 4.162 6 C 0.056 3.944 7 C -0.218 4.218 8 C -0.087 4.087 9 C -0.193 4.193 10 C 0.118 3.882 11 C -0.465 4.465 12 H 0.103 0.897 13 C -0.149 4.149 14 N -0.394 5.394 15 Si 0.737 3.263 16 H -0.181 1.181 17 H -0.194 1.194 18 H -0.196 1.196 19 C -0.250 4.250 20 C -0.074 4.074 21 C -0.192 4.192 22 C 0.106 3.894 23 F -0.117 7.117 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.123 0.877 27 H 0.142 0.858 28 H 0.148 0.852 29 H 0.112 0.888 30 H 0.137 0.863 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.646 -10.963 -1.469 11.647 hybrid contribution -0.681 1.783 -0.020 1.909 sum -4.328 -9.181 -1.489 10.258 Atomic orbital electron populations 1.23625 0.95300 1.06642 1.05563 1.85357 1.05755 1.03381 1.93814 1.21477 0.94763 0.96974 1.15199 1.20810 0.97208 0.92725 1.00550 1.21152 0.96508 0.94735 1.03767 1.18873 0.91482 0.93181 0.90873 1.17969 0.93616 0.89126 1.21069 1.20522 0.96334 0.93395 0.98457 1.20985 0.97011 0.94169 1.07105 1.17784 0.91497 0.92906 0.86016 1.19812 1.02412 0.91308 1.32986 0.89689 1.26082 0.93838 1.02451 0.92528 1.69842 1.11662 1.37749 1.20194 0.86160 0.79875 0.80708 0.79570 1.18063 1.19354 1.19638 1.20695 0.97879 0.92583 1.13808 1.20439 0.94249 0.95416 0.97305 1.21063 1.00944 0.89826 1.07380 1.16968 0.82964 0.86207 1.03224 1.91465 1.60654 1.65675 1.93905 0.89876 0.89884 0.87727 0.85826 0.85239 0.88814 0.86257 0.90265 0.88513 0.88777 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.15 101.05 0.92 -0.38 16 2 S -0.12 -1.66 22.16 -107.50 -2.38 -4.04 16 3 C -0.17 -2.74 6.13 -38.77 -0.24 -2.98 16 4 C -0.09 -1.34 9.34 -39.43 -0.37 -1.71 16 5 C -0.14 -2.37 9.42 -39.21 -0.37 -2.74 16 6 C 0.06 1.09 5.88 -104.83 -0.62 0.48 16 7 C -0.22 -4.61 5.90 -104.63 -0.62 -5.23 16 8 C -0.07 -1.50 9.36 -39.64 -0.37 -1.87 16 9 C -0.17 -4.19 8.63 -39.29 -0.34 -4.53 16 10 C 0.12 3.00 5.57 -106.80 -0.60 2.41 16 11 C -0.44 -10.67 9.02 -37.91 -0.34 -11.02 16 12 H 0.09 1.98 7.91 -52.49 -0.42 1.57 16 13 C 0.07 1.65 5.13 -17.34 -0.09 1.56 16 14 N -0.77 -18.28 10.96 55.55 0.61 -17.67 16 15 Si 0.91 17.01 29.60 -169.99 -5.03 11.98 16 16 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 17 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 18 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 19 C -0.23 -5.30 9.73 -39.29 -0.38 -5.69 16 20 C -0.06 -1.20 9.36 -39.64 -0.37 -1.57 16 21 C -0.17 -3.08 9.39 -39.16 -0.37 -3.45 16 22 C 0.13 2.28 7.27 -39.29 -0.29 1.99 16 23 F -0.14 -2.40 16.75 2.25 0.04 -2.36 16 24 H 0.08 0.71 7.74 -51.92 -0.40 0.31 16 25 H 0.08 0.71 7.74 -51.93 -0.40 0.30 16 26 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.12 1.47 5.86 -52.48 -0.31 1.17 16 28 H 0.13 2.00 6.17 -52.49 -0.32 1.67 16 29 H 0.09 1.81 6.17 -52.49 -0.32 1.49 16 30 H 0.12 2.94 6.16 -52.49 -0.32 2.62 16 31 H 0.29 6.08 8.30 -40.82 -0.34 5.74 16 32 H 0.10 2.08 8.06 -52.48 -0.42 1.65 16 33 H 0.09 1.77 6.17 -52.48 -0.32 1.45 16 34 H 0.14 2.30 6.17 -52.48 -0.32 1.98 16 LS Contribution 304.64 15.07 4.59 4.59 Total: -1.00 -25.68 304.64 -9.73 -35.41 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -3.12 Total: 6.80 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: -4.43 Total: -34.71 kcal Atomic # 7 Polarization: -18.28 SS G_CDS: 0.61 Total: -17.67 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.38 Total: -4.04 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -25.68 -9.73 -35.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242977045.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.100 kcal (2) G-P(sol) polarization free energy of solvation -25.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds