Wall clock time and date at job start Tue Mar 31 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76202 * 103.00109 * 2 1 4 4 C 1.39202 * 119.94570 * 0.02592 * 3 2 1 5 5 C 1.37671 * 120.09029 * 179.97438 * 4 3 2 6 6 C 1.39794 * 119.96861 * 0.02562 * 5 4 3 7 7 C 1.47785 * 120.04897 * 179.97438 * 6 5 4 8 8 C 1.40054 * 119.89445 * 359.72247 * 7 6 5 9 9 C 1.36171 * 120.11301 * 179.75814 * 8 7 6 10 10 C 1.40968 * 119.88660 * 0.49778 * 9 8 7 11 11 C 1.40968 * 120.10859 * 179.74195 * 10 9 8 12 12 H 1.08001 * 119.99670 * 204.73571 * 11 10 9 13 13 C 1.39935 * 120.00305 * 24.72685 * 11 10 9 14 14 N 1.30849 * 119.99642 * 17.98488 * 13 11 10 15 15 Si 1.86799 * 120.00117 * 197.98923 * 13 11 10 16 16 H 1.48497 * 109.47157 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46884 * 120.00145 * 15 13 11 18 18 H 1.48498 * 109.46999 * 239.99732 * 15 13 11 19 19 C 1.40963 * 119.78519 * 359.75739 * 10 9 8 20 20 C 1.36178 * 119.88631 * 0.02562 * 19 10 9 21 21 C 1.39787 * 119.89366 * 359.74864 * 6 5 4 22 22 C 1.37810 * 119.91255 * 0.49650 * 21 6 5 23 23 F 1.35101 * 119.98607 * 179.77559 * 22 21 6 24 24 H 1.09001 * 109.46704 * 299.99735 * 1 2 3 25 25 H 1.08997 * 109.47207 * 59.99567 * 1 2 3 26 26 H 1.08998 * 109.47032 * 180.02562 * 1 2 3 27 27 H 1.08005 * 119.95743 * 359.95371 * 4 3 2 28 28 H 1.07991 * 120.01360 * 180.02562 * 5 4 3 29 29 H 1.08002 * 119.93758 * 0.02562 * 8 7 6 30 30 H 1.07998 * 120.06035 * 180.23293 * 9 8 7 31 31 H 0.97002 * 119.99575 * 179.97438 * 14 13 11 32 32 H 1.08005 * 120.06038 * 179.97438 * 19 10 9 33 33 H 1.08004 * 119.94886 * 179.97438 * 20 19 10 34 34 H 1.08007 * 120.04567 * 180.25518 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1915 2.6653 0.0005 5 6 1.4978 4.0075 0.0011 6 6 2.8339 4.4188 0.0005 7 6 3.1647 5.8591 0.0005 8 6 2.1377 6.8113 -0.0048 9 6 2.4374 8.1396 0.0002 10 6 3.7843 8.5557 0.0000 11 6 4.0999 9.9296 -0.0003 12 1 5.0488 10.2655 -0.3918 13 6 3.1838 10.8582 0.5063 14 7 2.2121 10.4596 1.2866 15 14 3.3481 12.6667 0.0685 16 1 4.5208 12.8557 -0.8228 17 1 2.1184 13.1207 -0.6292 18 1 3.5354 13.4612 1.3090 19 6 4.8145 7.5935 0.0000 20 6 4.5045 6.2675 -0.0005 21 6 3.8563 3.4656 0.0048 22 6 3.5444 2.1232 -0.0009 23 9 4.5314 1.2007 -0.0014 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 0.1592 2.3478 0.0002 28 1 0.7064 4.7422 0.0019 29 1 1.1061 6.4913 -0.0085 30 1 1.6447 8.8730 -0.0002 31 1 1.5773 11.1033 1.6381 32 1 5.8479 7.9074 -0.0005 33 1 5.2930 5.5294 -0.0010 34 1 4.8894 3.7806 0.0085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242977045.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:11 Heat of formation + Delta-G solvation = -20.909331 kcal Electronic energy + Delta-G solvation = -18883.543541 eV Core-core repulsion = 15785.677745 eV Total energy + Delta-G solvation = -3097.865796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.95285 -40.38380 -38.85071 -35.78671 -33.28631 -32.21596 -31.11034 -30.49123 -29.63373 -27.14553 -24.33044 -24.01444 -22.18426 -21.80199 -19.45009 -18.98633 -17.97950 -17.39653 -17.24912 -16.71376 -16.39511 -15.71974 -15.66826 -15.15479 -15.04319 -14.55292 -14.50560 -14.12444 -14.08491 -13.88855 -13.63517 -13.37148 -13.05674 -12.94642 -12.80890 -12.65281 -12.31924 -12.04445 -11.60234 -11.26405 -11.25211 -11.16780 -10.77474 -9.88832 -9.52578 -9.29560 -8.76661 -8.22143 -6.35320 -0.23375 0.21392 0.52552 1.01703 1.18285 1.38826 1.47492 1.50714 1.54294 2.16889 2.45845 2.87624 3.16600 3.70038 3.74450 3.95672 4.14591 4.22390 4.29833 4.33136 4.41639 4.43464 4.72233 4.84838 4.91378 4.97291 5.01410 5.08673 5.11115 5.24384 5.31763 5.53953 5.66220 5.78541 6.00323 6.03743 6.20249 6.27553 6.59666 6.82054 6.94351 8.19968 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.039426 B = 0.003199 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.019518 B = 8751.028246 C = 9377.025039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.145 6.145 3 C -0.161 4.161 4 C -0.085 4.085 5 C -0.134 4.134 6 C 0.029 3.971 7 C -0.209 4.209 8 C -0.074 4.074 9 C -0.194 4.194 10 C 0.090 3.910 11 C -0.480 4.480 12 H 0.081 0.919 13 C 0.036 3.964 14 N -0.807 5.807 15 Si 0.985 3.015 16 H -0.258 1.258 17 H -0.262 1.262 18 H -0.264 1.264 19 C -0.247 4.247 20 C -0.065 4.065 21 C -0.169 4.169 22 C 0.109 3.891 23 F -0.141 7.141 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.129 0.871 27 H 0.162 0.838 28 H 0.143 0.857 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.294 0.706 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.934 -11.994 -1.825 13.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.096 5.904 3 C -0.273 4.273 4 C -0.108 4.108 5 C -0.154 4.154 6 C 0.026 3.974 7 C -0.210 4.210 8 C -0.092 4.092 9 C -0.214 4.214 10 C 0.087 3.913 11 C -0.508 4.508 12 H 0.099 0.901 13 C -0.182 4.182 14 N -0.431 5.431 15 Si 0.805 3.195 16 H -0.181 1.181 17 H -0.186 1.186 18 H -0.189 1.189 19 C -0.267 4.267 20 C -0.083 4.083 21 C -0.189 4.189 22 C 0.084 3.916 23 F -0.120 7.120 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.148 0.852 27 H 0.179 0.821 28 H 0.161 0.839 29 H 0.137 0.863 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.135 0.865 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.454 -13.014 -1.669 14.209 hybrid contribution -0.223 1.909 0.042 1.923 sum -5.677 -11.105 -1.628 12.578 Atomic orbital electron populations 1.23812 0.90944 1.08759 1.06780 1.85556 1.10528 1.01207 1.93149 1.21861 0.94420 0.98966 1.12088 1.21180 0.98815 0.91607 0.99205 1.21384 0.95807 0.96055 1.02154 1.18813 0.92920 0.91823 0.93824 1.18271 0.93335 0.90624 1.18780 1.20779 0.97894 0.92693 0.97848 1.20978 0.96592 0.94995 1.08807 1.18110 0.92286 0.93744 0.87122 1.19986 1.03340 0.92022 1.35410 0.90050 1.26856 0.93144 1.06435 0.91751 1.69874 1.12657 1.39401 1.21200 0.85104 0.79810 0.75237 0.79318 1.18101 1.18609 1.18905 1.20875 0.97951 0.93285 1.14540 1.20718 0.95338 0.95282 0.97012 1.21123 1.01046 0.90204 1.06546 1.17108 0.83805 0.86025 1.04620 1.91455 1.60872 1.65606 1.94038 0.88651 0.88580 0.85229 0.82074 0.83913 0.86337 0.87542 0.89539 0.88063 0.86529 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.15 113.37 1.04 -0.75 16 2 S -0.14 -3.43 22.16 -56.49 -1.25 -4.68 16 3 C -0.16 -4.64 6.13 22.79 0.14 -4.50 16 4 C -0.09 -2.21 9.34 22.37 0.21 -2.00 16 5 C -0.13 -4.10 9.42 22.51 0.21 -3.89 16 6 C 0.03 1.04 5.88 -20.00 -0.12 0.92 16 7 C -0.21 -8.85 5.90 -19.87 -0.12 -8.97 16 8 C -0.07 -3.26 9.36 22.23 0.21 -3.05 16 9 C -0.19 -9.74 8.63 22.46 0.19 -9.55 16 10 C 0.09 4.69 5.57 -21.27 -0.12 4.57 16 11 C -0.48 -24.64 9.02 23.35 0.21 -24.43 16 12 H 0.08 4.03 7.91 -2.91 -0.02 4.00 16 13 C 0.04 1.69 5.13 85.25 0.44 2.13 16 14 N -0.81 -39.68 10.96 21.83 0.24 -39.44 16 15 Si 0.99 35.72 29.60 68.60 2.03 37.75 16 16 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 17 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 18 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 19 C -0.25 -11.84 9.73 22.46 0.22 -11.62 16 20 C -0.07 -2.84 9.36 22.23 0.21 -2.63 16 21 C -0.17 -5.86 9.39 22.54 0.21 -5.64 16 22 C 0.11 3.60 7.27 22.46 0.16 3.77 16 23 F -0.14 -4.71 16.75 44.97 0.75 -3.96 16 24 H 0.09 1.11 7.74 -2.39 -0.02 1.09 16 25 H 0.10 1.10 7.74 -2.39 -0.02 1.08 16 26 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.16 2.95 5.86 -2.91 -0.02 2.93 16 28 H 0.14 3.95 6.17 -2.92 -0.02 3.93 16 29 H 0.12 4.46 6.17 -2.91 -0.02 4.45 16 30 H 0.11 5.51 6.16 -2.91 -0.02 5.49 16 31 H 0.29 12.85 8.30 -92.71 -0.77 12.09 16 32 H 0.10 4.57 8.06 -2.91 -0.02 4.54 16 33 H 0.12 4.39 6.17 -2.91 -0.02 4.38 16 34 H 0.14 4.59 6.17 -2.91 -0.02 4.57 16 Total: -1.00 -57.66 304.64 6.01 -51.65 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 1.14 Total: 24.33 kcal Atomic # 6 Polarization: -68.75 SS G_CDS: 3.09 Total: -65.65 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.24 Total: -39.44 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.75 Total: -3.96 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.25 Total: -4.68 kcal Total: -57.66 6.01 -51.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242977045.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.740 kcal (2) G-P(sol) polarization free energy of solvation -57.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds