Wall clock time and date at job start Tue Mar 31 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.76204 * 103.00212 * 2 1 4 4 C 1.38950 * 120.02296 * 359.97438 * 3 2 1 5 5 C 1.38224 * 120.18372 * 179.97438 * 4 3 2 6 6 C 1.38060 * 120.24807 * 0.02562 * 5 4 3 7 7 C 1.39409 * 120.04696 * 359.97438 * 6 5 4 8 8 C 1.48392 * 120.09212 * 179.97438 * 7 6 5 9 9 C 1.39736 * 119.99871 * 129.99965 * 8 7 6 10 10 C 1.38383 * 120.37798 * 179.97438 * 9 8 7 11 11 C 1.37718 * 120.38126 * 359.97438 * 10 9 8 12 12 C 1.40753 * 119.98991 * 0.02562 * 11 10 9 13 13 C 1.41425 * 120.18584 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00122 * 204.50565 * 13 12 11 15 15 C 1.39934 * 119.99973 * 24.51658 * 13 12 11 16 16 N 1.30829 * 120.00166 * 17.89342 * 15 13 12 17 17 Si 1.86803 * 119.99898 * 197.89675 * 15 13 12 18 18 H 1.48503 * 109.46756 * 89.99862 * 17 15 13 19 19 H 1.48492 * 109.47147 * 209.99759 * 17 15 13 20 20 H 1.48500 * 109.47012 * 329.99890 * 17 15 13 21 21 C 1.38733 * 120.00142 * 309.73027 * 8 7 6 22 22 C 1.38949 * 120.02870 * 179.97438 * 3 2 1 23 23 F 1.35099 * 120.12043 * 0.02562 * 22 3 2 24 24 H 1.09003 * 109.47582 * 300.00611 * 1 2 3 25 25 H 1.08997 * 109.46980 * 60.00053 * 1 2 3 26 26 H 1.08999 * 109.47402 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.90925 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.87430 * 179.97438 * 5 4 3 29 29 H 1.07993 * 119.97972 * 179.70381 * 6 5 4 30 30 H 1.08002 * 119.81056 * 359.97438 * 9 8 7 31 31 H 1.07999 * 119.81224 * 180.02562 * 10 9 8 32 32 H 1.08006 * 120.00830 * 180.02562 * 11 10 9 33 33 H 0.97002 * 119.99953 * 179.97438 * 16 15 13 34 34 H 1.08005 * 120.18891 * 0.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1946 2.6649 -0.0005 5 6 1.5018 4.0126 0.0000 6 6 2.8191 4.4256 0.0005 7 6 3.8462 3.4830 0.0011 8 6 5.2625 3.9258 0.0011 9 6 6.1613 3.3922 0.9285 10 6 7.4840 3.7991 0.9352 11 6 7.9296 4.7342 0.0276 12 6 7.0378 5.2820 -0.9136 13 6 7.4909 6.2428 -1.8471 14 1 6.7929 6.9404 -2.2859 15 6 8.8435 6.2896 -2.2024 16 7 9.6183 5.2626 -1.9645 17 14 9.5431 7.8185 -3.0165 18 1 10.0408 8.7509 -1.9733 19 1 10.6634 7.4339 -3.9119 20 1 8.4810 8.4861 -3.8111 21 6 5.6956 4.8653 -0.9233 22 6 3.5389 2.1237 0.0005 23 9 4.5294 1.2049 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.1622 2.3480 -0.0005 28 1 0.7083 4.7452 -0.0008 29 1 3.0542 5.4796 -0.0039 30 1 5.8218 2.6580 1.6441 31 1 8.1709 3.3804 1.6557 32 1 8.9633 5.0471 0.0379 33 1 10.5559 5.2949 -2.2111 34 1 5.0044 5.2768 -1.6440 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243363482.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:15 Heat of formation + Delta-G solvation = -8.444616 kcal Electronic energy + Delta-G solvation = -19248.599480 eV Core-core repulsion = 16151.274195 eV Total energy + Delta-G solvation = -3097.325286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.44092 -38.87919 -37.23470 -33.86538 -31.94093 -30.47170 -29.86436 -29.37740 -27.78995 -25.31595 -23.11475 -22.53547 -20.58471 -20.33302 -17.97294 -17.00944 -16.76849 -15.90649 -15.39406 -15.31986 -15.07161 -14.63207 -14.07188 -13.94327 -13.87176 -13.36796 -13.14765 -12.78698 -12.60822 -12.37187 -12.27020 -11.90805 -11.62988 -11.27251 -11.08516 -11.00417 -10.76294 -10.48471 -10.28926 -9.79272 -9.63581 -9.47502 -9.18147 -8.61179 -7.53053 -7.40471 -7.23090 -6.77692 -4.39095 1.18096 1.30365 1.41424 2.31384 2.75799 2.87271 3.06598 3.09860 3.19313 3.77058 3.91928 4.42299 4.59597 4.84811 4.85049 4.90929 5.12108 5.25849 5.39549 5.44967 5.60569 5.83821 6.08025 6.15265 6.27673 6.43165 6.43264 6.59890 6.86218 6.92827 7.05497 7.19120 7.27916 7.49581 7.78753 7.97105 8.00931 8.20982 8.57952 8.85166 8.90521 10.17457 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.030595 B = 0.003779 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.952017 B = 7406.713822 C = 7801.906005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.105 6.105 3 C -0.127 4.127 4 C -0.124 4.124 5 C -0.113 4.113 6 C -0.090 4.090 7 C -0.025 4.025 8 C -0.049 4.049 9 C -0.208 4.208 10 C -0.107 4.107 11 C -0.152 4.152 12 C 0.107 3.893 13 C -0.465 4.465 14 H 0.078 0.922 15 C 0.076 3.924 16 N -0.794 5.794 17 Si 0.909 3.091 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.262 1.262 21 C -0.197 4.197 22 C 0.121 3.879 23 F -0.122 7.122 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.281 0.719 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.241 -4.384 3.159 15.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.136 5.864 3 C -0.240 4.240 4 C -0.148 4.148 5 C -0.133 4.133 6 C -0.110 4.110 7 C -0.027 4.027 8 C -0.049 4.049 9 C -0.228 4.228 10 C -0.125 4.125 11 C -0.172 4.172 12 C 0.104 3.896 13 C -0.495 4.495 14 H 0.096 0.904 15 C -0.141 4.141 16 N -0.419 5.419 17 Si 0.733 3.267 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.186 1.186 21 C -0.216 4.216 22 C 0.096 3.904 23 F -0.100 7.100 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.125 0.875 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.154 0.846 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.138 0.862 33 H 0.092 0.908 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.319 -5.581 3.107 14.772 hybrid contribution -0.253 1.503 -0.432 1.584 sum -13.572 -4.078 2.675 14.422 Atomic orbital electron populations 1.23676 0.95391 1.06914 1.05576 1.85680 1.05497 1.02283 1.92940 1.21647 0.94887 0.97775 1.09695 1.20892 0.97395 0.92836 1.03660 1.20977 0.96587 0.95027 1.00680 1.21262 0.91214 0.99862 0.98653 1.19175 0.95443 0.90140 0.97976 1.18121 0.88981 0.99357 0.98473 1.20360 0.93831 1.05553 1.03031 1.20618 0.94443 0.98583 0.98897 1.21446 1.00554 0.99758 0.95394 1.17518 0.90439 0.90724 0.90889 1.19550 0.93318 1.14808 1.21776 0.90367 1.25896 0.97080 0.96602 0.94568 1.69823 1.07122 1.28054 1.36941 0.86308 0.79013 0.81921 0.79458 1.19272 1.20334 1.18624 1.20987 0.97205 1.02031 1.01412 1.17168 0.82919 0.86320 1.03990 1.91521 1.60077 1.64950 1.93440 0.89796 0.89770 0.87473 0.85542 0.85326 0.84569 0.89312 0.89011 0.86226 0.90824 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.15 101.05 0.92 -0.28 16 2 S -0.11 -1.41 22.16 -107.50 -2.38 -3.79 16 3 C -0.13 -1.98 6.11 -39.05 -0.24 -2.22 16 4 C -0.12 -1.61 9.36 -39.32 -0.37 -1.98 16 5 C -0.11 -1.46 10.02 -39.65 -0.40 -1.86 16 6 C -0.09 -1.44 9.50 -39.21 -0.37 -1.81 16 7 C -0.02 -0.48 5.47 -104.86 -0.57 -1.06 16 8 C -0.05 -1.12 5.31 -104.97 -0.56 -1.68 16 9 C -0.21 -4.83 8.87 -38.97 -0.35 -5.18 16 10 C -0.11 -2.55 10.01 -39.72 -0.40 -2.95 16 11 C -0.15 -3.96 8.69 -38.82 -0.34 -4.29 16 12 C 0.11 2.82 5.57 -106.87 -0.60 2.23 16 13 C -0.46 -12.21 9.05 -37.73 -0.34 -12.56 16 14 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 15 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 16 N -0.79 -20.53 10.96 55.55 0.61 -19.92 16 17 Si 0.91 18.53 29.60 -169.99 -5.03 13.50 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 C -0.20 -4.80 9.24 -38.53 -0.36 -5.16 16 22 C 0.12 2.29 7.13 -38.90 -0.28 2.01 16 23 F -0.12 -2.52 15.37 2.25 0.03 -2.49 16 24 H 0.08 0.61 7.74 -51.92 -0.40 0.21 16 25 H 0.08 0.62 7.74 -51.93 -0.40 0.22 16 26 H 0.11 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.13 1.23 5.86 -52.49 -0.31 0.92 16 28 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 29 H 0.14 2.04 8.04 -52.49 -0.42 1.62 16 30 H 0.09 1.93 7.77 -52.49 -0.41 1.53 16 31 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.12 3.19 6.15 -52.48 -0.32 2.86 16 33 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 34 H 0.10 2.20 8.04 -52.48 -0.42 1.78 16 LS Contribution 309.82 15.07 4.67 4.67 Total: -1.00 -28.54 309.82 -9.93 -38.47 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -3.50 Total: 4.53 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: -4.32 Total: -34.97 kcal Atomic # 7 Polarization: -20.53 SS G_CDS: 0.61 Total: -19.92 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.03 Total: -2.49 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -2.38 Total: -3.79 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.54 -9.93 -38.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243363482.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.024 kcal (2) G-P(sol) polarization free energy of solvation -28.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds