Wall clock time and date at job start Tue Mar 31 2020 06:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.76204 * 103.00212 * 2 1 4 4 C 1.38950 * 120.02296 * 359.97438 * 3 2 1 5 5 C 1.38224 * 120.18372 * 179.97438 * 4 3 2 6 6 C 1.38060 * 120.24807 * 0.02562 * 5 4 3 7 7 C 1.39409 * 120.04696 * 359.97438 * 6 5 4 8 8 C 1.48392 * 120.09212 * 179.97438 * 7 6 5 9 9 C 1.39736 * 119.99871 * 129.99965 * 8 7 6 10 10 C 1.38383 * 120.37798 * 179.97438 * 9 8 7 11 11 C 1.37718 * 120.38126 * 359.97438 * 10 9 8 12 12 C 1.40753 * 119.98991 * 0.02562 * 11 10 9 13 13 C 1.41425 * 120.18584 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00122 * 204.50565 * 13 12 11 15 15 C 1.39934 * 119.99973 * 24.51658 * 13 12 11 16 16 N 1.30829 * 120.00166 * 17.89342 * 15 13 12 17 17 Si 1.86803 * 119.99898 * 197.89675 * 15 13 12 18 18 H 1.48503 * 109.46756 * 89.99862 * 17 15 13 19 19 H 1.48492 * 109.47147 * 209.99759 * 17 15 13 20 20 H 1.48500 * 109.47012 * 329.99890 * 17 15 13 21 21 C 1.38733 * 120.00142 * 309.73027 * 8 7 6 22 22 C 1.38949 * 120.02870 * 179.97438 * 3 2 1 23 23 F 1.35099 * 120.12043 * 0.02562 * 22 3 2 24 24 H 1.09003 * 109.47582 * 300.00611 * 1 2 3 25 25 H 1.08997 * 109.46980 * 60.00053 * 1 2 3 26 26 H 1.08999 * 109.47402 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.90925 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.87430 * 179.97438 * 5 4 3 29 29 H 1.07993 * 119.97972 * 179.70381 * 6 5 4 30 30 H 1.08002 * 119.81056 * 359.97438 * 9 8 7 31 31 H 1.07999 * 119.81224 * 180.02562 * 10 9 8 32 32 H 1.08006 * 120.00830 * 180.02562 * 11 10 9 33 33 H 0.97002 * 119.99953 * 179.97438 * 16 15 13 34 34 H 1.08005 * 120.18891 * 0.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1946 2.6649 -0.0005 5 6 1.5018 4.0126 0.0000 6 6 2.8191 4.4256 0.0005 7 6 3.8462 3.4830 0.0011 8 6 5.2625 3.9258 0.0011 9 6 6.1613 3.3922 0.9285 10 6 7.4840 3.7991 0.9352 11 6 7.9296 4.7342 0.0276 12 6 7.0378 5.2820 -0.9136 13 6 7.4909 6.2428 -1.8471 14 1 6.7929 6.9404 -2.2859 15 6 8.8435 6.2896 -2.2024 16 7 9.6183 5.2626 -1.9645 17 14 9.5431 7.8185 -3.0165 18 1 10.0408 8.7509 -1.9733 19 1 10.6634 7.4339 -3.9119 20 1 8.4810 8.4861 -3.8111 21 6 5.6956 4.8653 -0.9233 22 6 3.5389 2.1237 0.0005 23 9 4.5294 1.2049 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.1622 2.3480 -0.0005 28 1 0.7083 4.7452 -0.0008 29 1 3.0542 5.4796 -0.0039 30 1 5.8218 2.6580 1.6441 31 1 8.1709 3.3804 1.6557 32 1 8.9633 5.0471 0.0379 33 1 10.5559 5.2949 -2.2111 34 1 5.0044 5.2768 -1.6440 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243363482.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:14 Heat of formation + Delta-G solvation = -21.299338 kcal Electronic energy + Delta-G solvation = -19249.156903 eV Core-core repulsion = 16151.274195 eV Total energy + Delta-G solvation = -3097.882708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.89388 -40.25740 -38.93252 -35.70392 -33.42478 -31.91238 -31.55710 -30.31875 -29.14070 -27.23626 -24.49041 -23.87414 -22.42566 -21.98846 -19.49990 -18.53159 -17.98639 -17.42116 -17.08589 -16.81590 -16.42051 -16.12991 -15.61446 -15.21935 -14.93361 -14.60199 -14.54516 -14.23555 -14.11630 -13.60430 -13.46418 -13.37295 -13.19728 -12.91048 -12.76628 -12.57931 -12.40476 -12.11911 -11.53630 -11.37925 -11.23267 -11.05917 -10.83258 -10.00223 -9.46808 -9.02870 -8.65628 -8.46024 -6.38374 -0.07022 0.05207 0.43018 0.93809 1.07185 1.38464 1.45301 1.52145 1.52351 2.20419 2.49740 2.72291 3.19873 3.63410 3.67986 3.99612 4.07576 4.22569 4.30590 4.34119 4.41019 4.55711 4.63413 4.84176 4.91966 4.92790 4.95886 5.09594 5.20681 5.24568 5.33509 5.46271 5.60119 5.80924 5.90508 6.02753 6.09430 6.29185 6.62890 6.89778 6.96211 8.31997 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.030595 B = 0.003779 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.952017 B = 7406.713822 C = 7801.906005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.153 6.153 3 C -0.127 4.127 4 C -0.108 4.108 5 C -0.094 4.094 6 C -0.096 4.096 7 C -0.061 4.061 8 C -0.040 4.040 9 C -0.220 4.220 10 C -0.108 4.108 11 C -0.182 4.182 12 C 0.081 3.919 13 C -0.499 4.499 14 H 0.080 0.920 15 C 0.034 3.966 16 N -0.827 5.827 17 Si 0.986 3.014 18 H -0.261 1.261 19 H -0.269 1.269 20 H -0.256 1.256 21 C -0.213 4.213 22 C 0.087 3.913 23 F -0.144 7.144 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.129 0.871 27 H 0.171 0.829 28 H 0.175 0.825 29 H 0.141 0.859 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.289 0.711 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.600 -3.979 2.977 18.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.088 5.912 3 C -0.240 4.240 4 C -0.131 4.131 5 C -0.113 4.113 6 C -0.116 4.116 7 C -0.063 4.063 8 C -0.040 4.040 9 C -0.239 4.239 10 C -0.127 4.127 11 C -0.201 4.201 12 C 0.078 3.922 13 C -0.528 4.528 14 H 0.098 0.902 15 C -0.181 4.181 16 N -0.453 5.453 17 Si 0.806 3.194 18 H -0.186 1.186 19 H -0.194 1.194 20 H -0.180 1.180 21 C -0.233 4.233 22 C 0.062 3.938 23 F -0.123 7.123 24 H 0.120 0.880 25 H 0.118 0.882 26 H 0.147 0.853 27 H 0.188 0.812 28 H 0.193 0.807 29 H 0.158 0.842 30 H 0.117 0.883 31 H 0.130 0.870 32 H 0.123 0.877 33 H 0.099 0.901 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.692 -5.197 2.936 17.728 hybrid contribution 0.555 1.230 -0.327 1.388 sum -16.138 -3.967 2.609 16.822 Atomic orbital electron populations 1.23847 0.90057 1.08933 1.07179 1.85910 1.11318 1.01313 1.92646 1.21859 0.94013 0.99490 1.08653 1.21477 0.98727 0.92265 1.00666 1.21457 0.96069 0.96125 0.97689 1.21432 0.92037 0.99495 0.98649 1.19113 0.94235 0.91354 1.01587 1.18440 0.91225 0.97582 0.96790 1.20592 0.93819 1.05908 1.03579 1.20871 0.95289 0.97838 0.98675 1.21385 1.00065 1.01699 0.96972 1.17892 0.91564 0.91343 0.91364 1.19835 0.94610 1.15587 1.22763 0.90215 1.26813 0.96810 0.99604 0.94836 1.69888 1.07741 1.29976 1.37691 0.85150 0.78290 0.77450 0.78493 1.18559 1.19385 1.17974 1.21129 0.96735 1.03097 1.02319 1.17484 0.84060 0.85842 1.06408 1.91450 1.61272 1.65647 1.93944 0.88001 0.88157 0.85313 0.81191 0.80732 0.84156 0.88256 0.86993 0.87662 0.90066 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 9.15 113.37 1.04 -0.52 16 2 S -0.15 -3.83 22.16 -56.49 -1.25 -5.08 16 3 C -0.13 -3.73 6.11 22.61 0.14 -3.60 16 4 C -0.11 -2.32 9.36 22.44 0.21 -2.11 16 5 C -0.09 -2.04 10.02 22.22 0.22 -1.82 16 6 C -0.10 -2.92 9.50 22.51 0.21 -2.71 16 7 C -0.06 -2.38 5.47 -20.02 -0.11 -2.49 16 8 C -0.04 -1.90 5.31 -20.09 -0.11 -2.01 16 9 C -0.22 -10.60 8.87 22.67 0.20 -10.40 16 10 C -0.11 -5.41 10.01 22.18 0.22 -5.19 16 11 C -0.18 -9.98 8.69 22.76 0.20 -9.78 16 12 C 0.08 4.49 5.57 -21.32 -0.12 4.37 16 13 C -0.50 -27.27 9.05 23.47 0.21 -27.06 16 14 H 0.08 4.16 7.91 -2.91 -0.02 4.13 16 15 C 0.03 1.75 5.14 85.25 0.44 2.19 16 16 N -0.83 -44.29 10.96 21.82 0.24 -44.05 16 17 Si 0.99 38.45 29.60 68.60 2.03 40.48 16 18 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 19 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 20 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 21 C -0.21 -10.88 9.24 22.95 0.21 -10.67 16 22 C 0.09 3.31 7.13 22.71 0.16 3.47 16 23 F -0.14 -6.25 15.37 44.97 0.69 -5.56 16 24 H 0.10 0.90 7.74 -2.39 -0.02 0.88 16 25 H 0.10 0.93 7.74 -2.39 -0.02 0.91 16 26 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.17 2.17 5.86 -2.91 -0.02 2.15 16 28 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 29 H 0.14 4.06 8.04 -2.91 -0.02 4.04 16 30 H 0.10 4.49 7.77 -2.91 -0.02 4.47 16 31 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 32 H 0.11 5.96 6.15 -2.91 -0.02 5.95 16 33 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 34 H 0.10 4.91 8.04 -2.91 -0.02 4.89 16 Total: -1.00 -67.13 309.82 5.96 -61.17 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 1.12 Total: 21.36 kcal Atomic # 6 Polarization: -71.45 SS G_CDS: 3.13 Total: -68.32 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.24 Total: -44.05 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 0.69 Total: -5.56 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Atomic # 16 Polarization: -3.83 SS G_CDS: -1.25 Total: -5.08 kcal Total: -67.13 5.96 -61.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243363482.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.870 kcal (2) G-P(sol) polarization free energy of solvation -67.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds