Wall clock time and date at job start Tue Mar 31 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31249 * 119.79948 * 2 1 4 4 C 1.33085 * 121.71731 * 179.97438 * 3 2 1 5 5 C 1.47775 * 119.46014 * 179.97438 * 4 3 2 6 6 C 1.39780 * 120.06499 * 0.02562 * 5 4 3 7 7 C 1.37673 * 119.95504 * 179.97438 * 6 5 4 8 8 C 1.39170 * 120.08192 * 359.97438 * 7 6 5 9 9 N 1.39320 * 119.93810 * 179.97438 * 8 7 6 10 10 C 1.39288 * 120.12717 * 359.97438 * 8 7 6 11 11 Cl 1.73596 * 119.97306 * 180.02562 * 10 8 7 12 12 C 1.37771 * 120.04796 * 0.02562 * 10 8 7 13 13 C 1.40000 * 121.08185 * 0.25443 * 4 3 2 14 14 C 1.36534 * 119.46457 * 359.48986 * 13 4 3 15 15 C 1.40963 * 119.79558 * 179.97438 * 2 1 3 16 16 C 1.41017 * 120.54479 * 0.04390 * 15 2 1 17 17 H 1.08002 * 120.00099 * 24.93377 * 16 15 2 18 18 C 1.39984 * 119.99747 * 204.93636 * 16 15 2 19 19 N 1.30814 * 119.99911 * 14.72919 * 18 16 15 20 20 Si 1.86797 * 119.99723 * 194.73015 * 18 16 15 21 21 H 1.48503 * 109.47102 * 60.00019 * 20 18 16 22 22 H 1.48494 * 109.46945 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47124 * 299.99987 * 20 18 16 24 24 H 1.09002 * 109.47643 * 90.00131 * 1 2 3 25 25 H 1.09001 * 109.47173 * 209.99748 * 1 2 3 26 26 H 1.09002 * 109.47323 * 330.00205 * 1 2 3 27 27 H 1.08002 * 120.02085 * 359.97438 * 6 5 4 28 28 H 1.08003 * 119.96334 * 179.71585 * 7 6 5 29 29 H 0.96998 * 120.00040 * 0.02562 * 9 8 7 30 30 H 0.97007 * 119.99920 * 179.97438 * 9 8 7 31 31 H 1.08002 * 120.04181 * 179.97438 * 12 10 8 32 32 H 1.08000 * 120.26710 * 179.74405 * 13 4 3 33 33 H 1.08001 * 120.79025 * 180.22844 * 14 13 4 34 34 H 0.96999 * 120.00182 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1389 0.0000 4 6 3.4893 1.1835 0.0005 5 6 4.1726 2.4938 -0.0001 6 6 3.4238 3.6740 -0.0006 7 6 4.0628 4.8935 -0.0007 8 6 5.4532 4.9525 0.0004 9 7 6.0967 6.1882 -0.0002 10 6 6.2028 3.7785 0.0020 11 17 7.9370 3.8568 0.0040 12 6 5.5688 2.5553 0.0020 13 6 4.2518 0.0093 -0.0043 14 6 3.6207 -1.2013 0.0011 15 6 2.2074 -1.2233 0.0005 16 6 1.5096 -2.4487 0.0002 17 1 0.5056 -2.4983 -0.3948 18 6 2.1182 -3.6008 0.5118 19 7 3.1979 -3.5002 1.2434 20 14 1.3885 -5.2818 0.1496 21 1 1.3697 -5.5075 -1.3180 22 1 2.2141 -6.3304 0.8007 23 1 0.0020 -5.3438 0.6777 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 2.3447 3.6294 -0.0011 28 1 3.4843 5.8056 -0.0057 29 1 5.5757 7.0064 -0.0009 30 1 7.0659 6.2304 0.0009 31 1 6.1501 1.6451 0.0029 32 1 5.3306 0.0608 -0.0080 33 1 4.1878 -2.1205 0.0012 34 1 3.6195 -4.2985 1.5983 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243371296.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:44 Heat of formation + Delta-G solvation = 14.459721 kcal Electronic energy + Delta-G solvation = -19230.080378 eV Core-core repulsion = 16151.624555 eV Total energy + Delta-G solvation = -3078.455824 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78397 -39.78066 -37.34771 -36.27427 -35.39808 -33.44144 -32.52646 -31.59527 -29.66376 -28.69560 -26.38176 -24.05206 -23.86742 -22.13137 -21.69301 -19.24848 -18.38492 -17.90191 -17.40300 -17.00728 -16.39993 -15.73216 -15.23539 -15.05880 -14.96424 -14.65390 -14.59277 -14.38845 -13.75373 -13.46411 -13.32560 -13.09360 -12.99731 -12.65304 -12.57974 -12.50211 -12.22425 -12.18395 -11.81507 -11.62633 -11.51470 -11.13479 -10.14835 -9.89132 -9.73605 -9.46993 -8.71961 -8.21938 -6.33280 0.14555 0.38017 0.99750 1.18834 1.22503 1.40627 1.52319 1.59768 2.17877 2.61714 2.95772 3.01975 3.74120 3.76627 3.92342 4.25766 4.39927 4.42038 4.58083 4.64275 4.81160 4.90393 5.02078 5.03838 5.06045 5.12246 5.18016 5.28471 5.36628 5.54068 5.75663 5.77725 5.92450 6.03351 6.10446 6.48843 6.51550 6.74279 6.82360 6.96636 7.75536 8.22073 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.027995 B = 0.003809 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.946343 B = 7349.430772 C = 8273.861937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.013 4.013 3 N -0.462 5.462 4 C 0.009 3.991 5 C -0.063 4.063 6 C -0.059 4.059 7 C -0.181 4.181 8 C 0.219 3.781 9 N -0.858 5.858 10 C -0.120 4.120 11 Cl -0.071 7.071 12 C -0.077 4.077 13 C -0.142 4.142 14 C -0.160 4.160 15 C 0.040 3.960 16 C -0.460 4.460 17 H 0.095 0.905 18 C 0.032 3.968 19 N -0.815 5.815 20 Si 0.988 3.012 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.254 1.254 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.127 0.873 28 H 0.158 0.842 29 H 0.413 0.587 30 H 0.403 0.597 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.054 11.375 -1.745 12.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.158 4.158 3 N -0.170 5.170 4 C -0.126 4.126 5 C -0.067 4.067 6 C -0.079 4.079 7 C -0.203 4.203 8 C 0.111 3.889 9 N -0.400 5.400 10 C -0.152 4.152 11 Cl -0.042 7.042 12 C -0.097 4.097 13 C -0.163 4.163 14 C -0.185 4.185 15 C 0.035 3.965 16 C -0.489 4.489 17 H 0.113 0.887 18 C -0.184 4.184 19 N -0.439 5.439 20 Si 0.808 3.192 21 H -0.183 1.183 22 H -0.194 1.194 23 H -0.178 1.178 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.145 0.855 28 H 0.175 0.825 29 H 0.244 0.756 30 H 0.234 0.766 31 H 0.145 0.855 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.925 12.012 -1.593 12.737 hybrid contribution 0.867 -1.570 0.050 1.794 sum 4.791 10.442 -1.543 11.591 Atomic orbital electron populations 1.20240 0.88685 1.01770 1.01416 1.21576 0.96958 0.87859 1.09362 1.66835 1.09002 1.30229 1.10972 1.19198 0.89043 0.91959 1.12426 1.18324 0.91758 0.91718 1.04851 1.21163 1.00388 0.90937 0.95372 1.20692 0.91357 0.98659 1.09634 1.17513 0.91420 0.85715 0.94239 1.42335 1.09876 1.03942 1.83811 1.20142 0.84021 0.93643 1.17349 1.98300 1.09905 1.98433 1.97596 1.20839 0.93340 0.96492 0.99033 1.21529 0.99646 0.93291 1.01786 1.21391 0.95131 0.96943 1.05060 1.18760 0.92959 0.94325 0.90460 1.19888 1.02132 0.92539 1.34345 0.88716 1.26936 0.94467 1.05381 0.91646 1.69834 1.17820 1.33656 1.22637 0.85142 0.79395 0.74867 0.79782 1.18320 1.19415 1.17790 0.91905 0.91428 0.91992 0.85481 0.82462 0.75605 0.76624 0.85549 0.86414 0.86577 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.60 9.57 71.23 0.68 -1.92 16 2 C -0.01 -0.67 6.86 43.31 0.30 -0.37 16 3 N -0.46 -22.73 9.29 -171.03 -1.59 -24.32 16 4 C 0.01 0.42 6.74 41.91 0.28 0.71 16 5 C -0.06 -2.53 5.88 -20.02 -0.12 -2.65 16 6 C -0.06 -2.04 9.56 22.51 0.22 -1.82 16 7 C -0.18 -4.82 9.87 22.36 0.22 -4.60 16 8 C 0.22 5.63 6.76 38.43 0.26 5.89 16 9 N -0.86 -14.96 9.02 -51.20 -0.46 -15.42 16 10 C -0.12 -3.57 6.33 22.41 0.14 -3.43 16 11 Cl -0.07 -1.78 27.57 -2.72 -0.07 -1.86 16 12 C -0.08 -2.72 9.18 22.53 0.21 -2.51 16 13 C -0.14 -6.92 9.38 22.30 0.21 -6.71 16 14 C -0.16 -8.45 8.73 22.63 0.20 -8.25 16 15 C 0.04 2.10 5.59 -21.17 -0.12 1.98 16 16 C -0.46 -23.21 8.15 23.37 0.19 -23.02 16 17 H 0.09 4.44 6.84 -2.91 -0.02 4.42 16 18 C 0.03 1.54 5.22 85.27 0.45 1.98 16 19 N -0.81 -40.66 10.83 21.83 0.24 -40.42 16 20 Si 0.99 35.58 29.58 68.60 2.03 37.61 16 21 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 22 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 23 H -0.25 -8.75 7.11 99.48 0.71 -8.04 16 24 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.07 2.71 6.76 -2.39 -0.02 2.69 16 26 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.13 4.52 7.51 -2.91 -0.02 4.50 16 28 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 29 H 0.41 4.85 8.83 -92.71 -0.82 4.03 16 30 H 0.40 6.43 7.48 -92.70 -0.69 5.73 16 31 H 0.13 4.44 6.14 -2.91 -0.02 4.42 16 32 H 0.12 5.07 6.14 -2.91 -0.02 5.05 16 33 H 0.12 6.27 6.17 -2.91 -0.02 6.25 16 34 H 0.29 13.18 8.30 -92.71 -0.77 12.41 16 Total: -1.00 -59.97 303.95 2.92 -57.05 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: -0.33 Total: 32.07 kcal Atomic # 6 Polarization: -47.83 SS G_CDS: 3.11 Total: -44.72 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -1.82 Total: -80.16 kcal Atomic # 14 Polarization: 35.58 SS G_CDS: 2.03 Total: 37.61 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.07 Total: -1.86 kcal Total: -59.97 2.92 -57.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243371296.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.510 kcal (2) G-P(sol) polarization free energy of solvation -59.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds