Wall clock time and date at job start Tue Mar 31 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38890 * 119.24160 * 2 1 4 4 C 1.36862 * 119.82398 * 179.97438 * 3 2 1 5 5 C 1.41128 * 118.39920 * 359.74035 * 4 3 2 6 6 C 1.40829 * 120.71988 * 180.27569 * 5 4 3 7 7 H 1.08002 * 119.99604 * 151.32144 * 6 5 4 8 8 C 1.40030 * 120.00187 * 331.31124 * 6 5 4 9 9 N 1.30799 * 119.99900 * 348.69267 * 8 6 5 10 10 Si 1.86801 * 119.99767 * 168.69372 * 8 6 5 11 11 H 1.48501 * 109.47286 * 90.00343 * 10 8 6 12 12 H 1.48501 * 109.46881 * 210.00314 * 10 8 6 13 13 H 1.48495 * 109.47238 * 329.99956 * 10 8 6 14 14 C 1.41949 * 118.55317 * 0.49361 * 5 4 3 15 15 C 1.47619 * 119.99960 * 179.77372 * 14 5 4 16 16 C 1.39845 * 120.07544 * 316.25400 * 15 14 5 17 17 C 1.37650 * 119.94882 * 179.97438 * 16 15 14 18 18 C 1.39191 * 120.08685 * 359.73572 * 17 16 15 19 19 N 1.39287 * 119.93339 * 180.25829 * 18 17 16 20 20 C 1.39304 * 120.14105 * 0.51761 * 18 17 16 21 21 Cl 1.73593 * 119.97494 * 179.76217 * 20 18 17 22 22 C 1.37758 * 120.05136 * 359.48584 * 20 18 17 23 23 N 1.31712 * 119.24104 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46747 * 270.02004 * 1 2 3 25 25 H 1.08992 * 109.47250 * 30.01908 * 1 2 3 26 26 H 1.08996 * 109.46898 * 150.02585 * 1 2 3 27 27 H 1.08002 * 120.09005 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.80227 * 179.97438 * 4 3 2 29 29 H 0.97005 * 119.99634 * 179.97438 * 9 8 6 30 30 H 1.08007 * 120.02561 * 359.95253 * 16 15 14 31 31 H 1.08002 * 119.95473 * 179.97438 * 17 16 15 32 32 H 0.97000 * 120.00598 * 180.25840 * 19 18 17 33 33 H 0.97007 * 119.99373 * 0.25827 * 19 18 17 34 34 H 1.07996 * 120.03836 * 180.27501 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1855 1.2119 0.0000 4 6 3.5541 1.2258 0.0005 5 6 4.2379 -0.0087 0.0067 6 6 5.6455 -0.0514 0.0133 7 1 6.1582 -0.8869 0.4666 8 6 6.3803 0.9893 -0.5679 9 7 5.7757 1.8838 -1.3062 10 14 8.2241 1.0999 -0.2889 11 1 8.9319 0.3403 -1.3505 12 1 8.6468 2.5228 -0.3328 13 1 8.5592 0.5248 1.0386 14 6 3.4759 -1.2064 0.0013 15 6 4.1584 -2.5153 0.0025 16 6 5.2615 -2.7313 -0.8296 17 6 5.8962 -3.9527 -0.8260 18 6 5.4450 -4.9712 0.0086 19 7 6.0930 -6.2041 0.0135 20 6 4.3433 -4.7618 0.8350 21 17 3.7804 -6.0370 1.8696 22 6 3.7037 -3.5417 0.8361 23 7 2.1504 -1.1493 0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8897 -0.5141 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6346 2.1409 0.0004 28 1 4.0977 2.1590 0.0001 29 1 6.2847 2.6049 -1.7086 30 1 5.6149 -1.9405 -1.4747 31 1 6.7479 -4.1197 -1.4688 32 1 5.7771 -6.9158 0.5919 33 1 6.8603 -6.3510 -0.5616 34 1 2.8523 -3.3782 1.4801 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243372305.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:47 Heat of formation + Delta-G solvation = 28.912109 kcal Electronic energy + Delta-G solvation = -19743.929932 eV Core-core repulsion = 16666.100811 eV Total energy + Delta-G solvation = -3077.829121 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.19356 -38.12836 -35.97925 -34.52146 -34.14236 -31.40405 -30.79725 -30.11250 -28.20306 -27.32460 -24.30772 -22.48520 -22.17166 -20.67877 -20.12017 -17.45847 -16.81061 -16.58764 -15.80089 -15.53093 -14.55980 -14.07395 -13.77308 -13.71910 -13.33333 -13.18062 -13.03674 -12.74855 -12.20697 -11.87599 -11.66578 -11.48359 -11.33220 -11.20992 -11.15750 -10.96355 -10.69945 -10.60926 -10.44396 -10.10166 -9.77092 -9.42228 -8.32721 -8.23537 -8.07028 -7.62578 -6.98953 -6.74373 -4.50680 1.86215 1.91231 2.58867 2.63278 2.95938 2.98121 3.03288 3.13346 3.79938 4.12056 4.36816 4.53523 5.30502 5.41585 5.56139 5.80446 6.03154 6.06572 6.07995 6.15346 6.33230 6.39227 6.51045 6.52946 6.64466 6.76332 6.85187 6.98464 7.04499 7.23246 7.33082 7.40818 7.66011 7.72680 7.86504 7.91712 7.95203 8.37152 8.59528 8.66279 9.58122 9.99763 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.006818 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.229231 B = 4105.856368 C = 6015.689890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.005 4.005 3 C -0.146 4.146 4 C -0.124 4.124 5 C 0.082 3.918 6 C -0.441 4.441 7 H 0.088 0.912 8 C 0.073 3.927 9 N -0.792 5.792 10 Si 0.909 3.091 11 H -0.267 1.267 12 H -0.275 1.275 13 H -0.259 1.259 14 C 0.028 3.972 15 C -0.020 4.020 16 C -0.038 4.038 17 C -0.196 4.196 18 C 0.208 3.792 19 N -0.879 5.879 20 C -0.118 4.118 21 Cl -0.096 7.096 22 C -0.053 4.053 23 N -0.452 5.452 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.128 0.872 29 H 0.284 0.716 30 H 0.140 0.860 31 H 0.122 0.878 32 H 0.395 0.605 33 H 0.396 0.604 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.521 -7.587 1.140 7.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.147 4.147 3 C -0.166 4.166 4 C -0.150 4.150 5 C 0.078 3.922 6 C -0.471 4.471 7 H 0.106 0.894 8 C -0.145 4.145 9 N -0.416 5.416 10 Si 0.733 3.267 11 H -0.192 1.192 12 H -0.200 1.200 13 H -0.182 1.182 14 C -0.110 4.110 15 C -0.023 4.023 16 C -0.058 4.058 17 C -0.218 4.218 18 C 0.104 3.896 19 N -0.419 5.419 20 C -0.149 4.149 21 Cl -0.068 7.068 22 C -0.073 4.073 23 N -0.161 5.161 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.145 0.855 29 H 0.095 0.905 30 H 0.158 0.842 31 H 0.140 0.860 32 H 0.224 0.776 33 H 0.223 0.777 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.015 -8.193 1.084 8.326 hybrid contribution 1.463 0.624 0.134 1.597 sum 2.478 -7.569 1.218 8.057 Atomic orbital electron populations 1.20291 0.91583 1.00918 1.00424 1.20266 0.94836 0.88569 1.10997 1.21254 0.95488 0.97095 1.02787 1.21421 0.92535 0.98919 1.02149 1.18338 0.94119 0.90765 0.88998 1.19562 0.90998 1.05142 1.31365 0.89365 1.25973 1.01486 0.94147 0.92911 1.69755 1.38649 1.11221 1.22019 0.86273 0.81616 0.78491 0.80346 1.19163 1.20009 1.18224 1.19375 0.88223 0.91084 1.12367 1.18116 0.95654 0.91914 0.96664 1.21360 0.93050 0.95401 0.95978 1.20404 1.04151 0.93369 1.03904 1.17439 0.91090 0.86879 0.94229 1.42331 1.36578 1.12638 1.50397 1.20121 1.01028 0.91460 1.02243 1.98279 1.89112 1.52052 1.67342 1.20926 0.98358 0.90045 0.97941 1.66887 1.09653 1.29208 1.10303 0.93177 0.92929 0.92570 0.88396 0.85460 0.90508 0.84193 0.86004 0.77580 0.77653 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 10.15 36.01 0.37 -0.97 16 2 C -0.01 -0.12 6.79 -82.40 -0.56 -0.68 16 3 C -0.15 -3.31 9.64 -39.84 -0.38 -3.70 16 4 C -0.12 -3.08 8.71 -38.98 -0.34 -3.42 16 5 C 0.08 2.08 5.54 -106.40 -0.59 1.49 16 6 C -0.44 -10.70 6.70 -37.93 -0.25 -10.95 16 7 H 0.09 2.09 6.50 -52.49 -0.34 1.75 16 8 C 0.07 1.69 5.26 -17.32 -0.09 1.60 16 9 N -0.79 -18.91 10.90 55.55 0.61 -18.30 16 10 Si 0.91 17.45 29.58 -169.99 -5.03 12.43 16 11 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 12 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 13 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 14 C 0.03 0.68 6.42 -82.26 -0.53 0.15 16 15 C -0.02 -0.45 5.26 -104.87 -0.55 -1.00 16 16 C -0.04 -0.76 7.84 -39.20 -0.31 -1.07 16 17 C -0.20 -3.27 9.87 -39.44 -0.39 -3.66 16 18 C 0.21 3.35 6.76 -83.72 -0.57 2.78 16 19 N -0.88 -10.70 9.02 32.47 0.29 -10.41 16 20 C -0.12 -2.06 6.33 -39.36 -0.25 -2.31 16 21 Cl -0.10 -1.44 27.57 -51.86 -1.43 -2.87 16 22 C -0.05 -1.05 9.42 -39.16 -0.37 -1.42 16 23 N -0.45 -10.96 10.05 -5.46 -0.05 -11.01 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.10 1.95 8.06 -52.49 -0.42 1.52 16 28 H 0.13 3.18 6.34 -52.49 -0.33 2.85 16 29 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 30 H 0.14 2.91 6.75 -52.48 -0.35 2.56 16 31 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.40 4.44 7.48 -40.82 -0.31 4.14 16 33 H 0.40 3.82 8.83 -40.82 -0.36 3.46 16 34 H 0.13 2.56 8.06 -52.49 -0.42 2.14 16 LS Contribution 305.87 15.07 4.61 4.61 Total: -1.00 -26.63 305.87 -9.18 -35.81 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -3.36 Total: 12.91 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -4.81 Total: -23.15 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.84 Total: -39.73 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.43 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -1.43 Total: -2.87 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.63 -9.18 -35.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243372305.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.722 kcal (2) G-P(sol) polarization free energy of solvation -26.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds