Wall clock time and date at job start Tue Mar 31 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38890 * 119.24160 * 2 1 4 4 C 1.36862 * 119.82398 * 179.97438 * 3 2 1 5 5 C 1.41128 * 118.39920 * 359.74035 * 4 3 2 6 6 C 1.40829 * 120.71988 * 180.27569 * 5 4 3 7 7 H 1.08002 * 119.99604 * 151.32144 * 6 5 4 8 8 C 1.40030 * 120.00187 * 331.31124 * 6 5 4 9 9 N 1.30799 * 119.99900 * 348.69267 * 8 6 5 10 10 Si 1.86801 * 119.99767 * 168.69372 * 8 6 5 11 11 H 1.48501 * 109.47286 * 90.00343 * 10 8 6 12 12 H 1.48501 * 109.46881 * 210.00314 * 10 8 6 13 13 H 1.48495 * 109.47238 * 329.99956 * 10 8 6 14 14 C 1.41949 * 118.55317 * 0.49361 * 5 4 3 15 15 C 1.47619 * 119.99960 * 179.77372 * 14 5 4 16 16 C 1.39845 * 120.07544 * 316.25400 * 15 14 5 17 17 C 1.37650 * 119.94882 * 179.97438 * 16 15 14 18 18 C 1.39191 * 120.08685 * 359.73572 * 17 16 15 19 19 N 1.39287 * 119.93339 * 180.25829 * 18 17 16 20 20 C 1.39304 * 120.14105 * 0.51761 * 18 17 16 21 21 Cl 1.73593 * 119.97494 * 179.76217 * 20 18 17 22 22 C 1.37758 * 120.05136 * 359.48584 * 20 18 17 23 23 N 1.31712 * 119.24104 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46747 * 270.02004 * 1 2 3 25 25 H 1.08992 * 109.47250 * 30.01908 * 1 2 3 26 26 H 1.08996 * 109.46898 * 150.02585 * 1 2 3 27 27 H 1.08002 * 120.09005 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.80227 * 179.97438 * 4 3 2 29 29 H 0.97005 * 119.99634 * 179.97438 * 9 8 6 30 30 H 1.08007 * 120.02561 * 359.95253 * 16 15 14 31 31 H 1.08002 * 119.95473 * 179.97438 * 17 16 15 32 32 H 0.97000 * 120.00598 * 180.25840 * 19 18 17 33 33 H 0.97007 * 119.99373 * 0.25827 * 19 18 17 34 34 H 1.07996 * 120.03836 * 180.27501 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1855 1.2119 0.0000 4 6 3.5541 1.2258 0.0005 5 6 4.2379 -0.0087 0.0067 6 6 5.6455 -0.0514 0.0133 7 1 6.1582 -0.8869 0.4666 8 6 6.3803 0.9893 -0.5679 9 7 5.7757 1.8838 -1.3062 10 14 8.2241 1.0999 -0.2889 11 1 8.9319 0.3403 -1.3505 12 1 8.6468 2.5228 -0.3328 13 1 8.5592 0.5248 1.0386 14 6 3.4759 -1.2064 0.0013 15 6 4.1584 -2.5153 0.0025 16 6 5.2615 -2.7313 -0.8296 17 6 5.8962 -3.9527 -0.8260 18 6 5.4450 -4.9712 0.0086 19 7 6.0930 -6.2041 0.0135 20 6 4.3433 -4.7618 0.8350 21 17 3.7804 -6.0370 1.8696 22 6 3.7037 -3.5417 0.8361 23 7 2.1504 -1.1493 0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8897 -0.5141 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6346 2.1409 0.0004 28 1 4.0977 2.1590 0.0001 29 1 6.2847 2.6049 -1.7086 30 1 5.6149 -1.9405 -1.4747 31 1 6.7479 -4.1197 -1.4688 32 1 5.7771 -6.9158 0.5919 33 1 6.8603 -6.3510 -0.5616 34 1 2.8523 -3.3782 1.4801 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243372305.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:46 Heat of formation + Delta-G solvation = 14.625611 kcal Electronic energy + Delta-G solvation = -19744.549441 eV Core-core repulsion = 16666.100811 eV Total energy + Delta-G solvation = -3078.448630 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.77509 -39.69671 -37.29230 -36.14886 -35.60611 -33.01620 -32.54597 -31.57523 -29.73596 -28.90770 -25.97644 -24.05294 -23.67049 -22.40176 -21.70588 -19.23176 -18.17320 -17.82982 -17.36266 -17.14976 -16.24091 -15.69878 -15.30467 -15.19813 -14.79070 -14.58359 -14.48255 -14.33717 -13.85957 -13.46338 -13.25606 -13.09210 -12.87813 -12.72385 -12.59400 -12.47279 -12.16044 -12.13911 -11.84303 -11.58975 -11.39223 -11.12574 -10.12177 -9.88445 -9.66123 -9.33189 -8.66835 -8.19538 -6.31742 0.31509 0.45711 0.92311 1.19981 1.30565 1.40766 1.50351 1.55043 2.20010 2.74507 2.91664 2.98740 3.69462 3.87463 3.96970 4.35713 4.44349 4.53893 4.62334 4.67388 4.76364 4.94722 4.99850 5.02419 5.10228 5.16074 5.26018 5.28261 5.37593 5.54677 5.80746 5.83526 5.94618 6.09647 6.13025 6.51087 6.57540 6.79975 6.86221 6.99779 7.78155 8.29372 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.006818 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.229231 B = 4105.856368 C = 6015.689890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.018 4.018 3 C -0.152 4.152 4 C -0.148 4.148 5 C 0.051 3.949 6 C -0.458 4.458 7 H 0.085 0.915 8 C 0.038 3.962 9 N -0.822 5.822 10 Si 0.976 3.024 11 H -0.256 1.256 12 H -0.269 1.269 13 H -0.260 1.260 14 C 0.017 3.983 15 C -0.057 4.057 16 C -0.046 4.046 17 C -0.189 4.189 18 C 0.225 3.775 19 N -0.858 5.858 20 C -0.127 4.127 21 Cl -0.073 7.073 22 C -0.058 4.058 23 N -0.472 5.472 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.291 0.709 30 H 0.122 0.878 31 H 0.155 0.845 32 H 0.404 0.596 33 H 0.412 0.588 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.536 -9.298 1.153 9.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.159 4.159 3 C -0.172 4.172 4 C -0.174 4.174 5 C 0.047 3.953 6 C -0.487 4.487 7 H 0.103 0.897 8 C -0.177 4.177 9 N -0.448 5.448 10 Si 0.797 3.203 11 H -0.181 1.181 12 H -0.193 1.193 13 H -0.184 1.184 14 C -0.121 4.121 15 C -0.060 4.060 16 C -0.066 4.066 17 C -0.212 4.212 18 C 0.117 3.883 19 N -0.399 5.399 20 C -0.158 4.158 21 Cl -0.044 7.044 22 C -0.078 4.078 23 N -0.181 5.181 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.142 0.858 28 H 0.134 0.866 29 H 0.101 0.899 30 H 0.140 0.860 31 H 0.173 0.827 32 H 0.234 0.766 33 H 0.243 0.757 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.033 -9.945 1.093 10.209 hybrid contribution 1.085 1.000 0.151 1.483 sum 3.117 -8.945 1.244 9.554 Atomic orbital electron populations 1.20340 0.88241 1.02187 1.01864 1.21066 0.97193 0.88159 1.09466 1.21544 0.95000 0.98489 1.02182 1.21467 0.93605 0.98503 1.03799 1.18694 0.95105 0.91388 0.90109 1.19634 0.90914 1.05884 1.32250 0.89687 1.26725 1.05608 0.93334 0.92077 1.69808 1.40443 1.11848 1.22675 0.85272 0.76217 0.78721 0.80139 1.18074 1.19315 1.18419 1.19864 0.88540 0.92291 1.11382 1.18144 0.97193 0.91610 0.99024 1.21237 0.93078 0.96386 0.95897 1.20632 1.04447 0.92103 1.04012 1.17461 0.90208 0.87918 0.92711 1.42296 1.36322 1.11174 1.50109 1.20141 1.01350 0.91392 1.02919 1.98283 1.88988 1.50512 1.66631 1.20796 0.98371 0.90837 0.97791 1.67017 1.09812 1.30012 1.11256 0.91531 0.90560 0.92373 0.85751 0.86585 0.89861 0.86013 0.82744 0.76598 0.75666 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.39 10.15 71.24 0.72 -1.67 16 2 C -0.02 -0.81 6.79 42.73 0.29 -0.52 16 3 C -0.15 -7.04 9.64 22.10 0.21 -6.83 16 4 C -0.15 -7.63 8.71 22.66 0.20 -7.43 16 5 C 0.05 2.72 5.54 -21.02 -0.12 2.60 16 6 C -0.46 -23.05 6.70 23.34 0.16 -22.89 16 7 H 0.09 4.19 6.50 -2.91 -0.02 4.18 16 8 C 0.04 1.80 5.26 85.28 0.45 2.25 16 9 N -0.82 -40.43 10.90 21.84 0.24 -40.19 16 10 Si 0.98 35.87 29.58 68.60 2.03 37.90 16 11 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 12 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 13 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 14 C 0.02 0.88 6.42 42.41 0.27 1.16 16 15 C -0.06 -2.54 5.26 -20.03 -0.11 -2.64 16 16 C -0.05 -1.86 7.84 22.52 0.18 -1.68 16 17 C -0.19 -5.98 9.87 22.36 0.22 -5.76 16 18 C 0.22 6.66 6.76 38.44 0.26 6.92 16 19 N -0.86 -17.66 9.02 -51.20 -0.46 -18.12 16 20 C -0.13 -4.27 6.33 22.41 0.14 -4.13 16 21 Cl -0.07 -2.04 27.57 -2.72 -0.07 -2.11 16 22 C -0.06 -2.34 9.42 22.54 0.21 -2.12 16 23 N -0.47 -23.56 10.05 -171.20 -1.72 -25.28 16 24 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 25 H 0.08 2.27 8.07 -2.39 -0.02 2.25 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 28 H 0.12 6.11 6.34 -2.91 -0.02 6.09 16 29 H 0.29 12.92 8.30 -92.70 -0.77 12.15 16 30 H 0.12 5.28 6.75 -2.91 -0.02 5.26 16 31 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 32 H 0.40 7.52 7.48 -92.71 -0.69 6.83 16 33 H 0.41 6.15 8.83 -92.70 -0.82 5.33 16 34 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -59.64 305.87 2.75 -56.89 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -0.35 Total: 33.66 kcal Atomic # 6 Polarization: -45.84 SS G_CDS: 3.09 Total: -42.75 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -1.94 Total: -83.59 kcal Atomic # 14 Polarization: 35.87 SS G_CDS: 2.03 Total: 37.90 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.07 Total: -2.11 kcal Total: -59.64 2.75 -56.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243372305.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.515 kcal (2) G-P(sol) polarization free energy of solvation -59.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds