Wall clock time and date at job start Tue Mar 31 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31244 * 119.79463 * 2 1 4 4 C 1.33107 * 121.71056 * 179.97438 * 3 2 1 5 5 C 1.47728 * 119.46089 * 180.02562 * 4 3 2 6 6 C 1.39640 * 120.19155 * 174.07930 * 5 4 3 7 7 C 1.37933 * 119.91447 * 179.97438 * 6 5 4 8 8 Cl 1.73603 * 119.84628 * 180.02562 * 7 6 5 9 9 C 1.38675 * 120.30395 * 359.97438 * 7 6 5 10 10 C 1.38074 * 120.39007 * 0.02562 * 9 7 6 11 11 C 1.38816 * 120.07712 * 359.74356 * 10 9 7 12 12 N 1.39215 * 120.15086 * 180.25388 * 11 10 9 13 13 C 1.40017 * 121.07822 * 0.04562 * 4 3 2 14 14 C 1.36527 * 119.46648 * 359.97438 * 13 4 3 15 15 C 1.40959 * 119.79228 * 180.02562 * 2 1 3 16 16 C 1.41006 * 120.54349 * 0.27222 * 15 2 1 17 17 H 1.07997 * 120.00380 * 331.13110 * 16 15 2 18 18 C 1.39989 * 119.99780 * 151.13907 * 16 15 2 19 19 N 1.30819 * 119.99887 * 340.13723 * 18 16 15 20 20 Si 1.86796 * 120.00086 * 160.14486 * 18 16 15 21 21 H 1.48494 * 109.47452 * 89.99603 * 20 18 16 22 22 H 1.48505 * 109.46792 * 209.99666 * 20 18 16 23 23 H 1.48497 * 109.46972 * 329.99267 * 20 18 16 24 24 H 1.09005 * 109.46955 * 269.97514 * 1 2 3 25 25 H 1.09002 * 109.47380 * 29.97006 * 1 2 3 26 26 H 1.08996 * 109.47266 * 149.97878 * 1 2 3 27 27 H 1.08001 * 120.04380 * 359.95690 * 6 5 4 28 28 H 1.08007 * 119.80212 * 180.02562 * 9 7 6 29 29 H 1.08006 * 119.95772 * 180.02562 * 10 9 7 30 30 H 0.97000 * 120.00063 * 327.82357 * 12 11 10 31 31 H 0.97003 * 119.99436 * 147.81417 * 12 11 10 32 32 H 1.07998 * 120.26651 * 179.97438 * 13 4 3 33 33 H 1.07998 * 120.79279 * 179.97438 * 14 13 4 34 34 H 0.97001 * 120.00312 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1390 0.0000 4 6 3.4895 1.1835 0.0005 5 6 4.1727 2.4933 0.0011 6 6 5.5618 2.5607 0.1261 7 6 6.1938 3.7867 0.1254 8 17 7.9210 3.8685 0.2803 9 6 5.4560 4.9542 0.0005 10 6 4.0819 4.9022 -0.1239 11 6 3.4298 3.6767 -0.1300 12 7 2.0449 3.6222 -0.2606 13 6 4.2520 0.0091 0.0001 14 6 3.6207 -1.2015 -0.0003 15 6 2.2074 -1.2233 -0.0005 16 6 1.5096 -2.4485 -0.0069 17 1 0.5287 -2.5137 0.4405 18 6 2.0882 -3.5806 -0.5929 19 7 3.0617 -3.4449 -1.4562 20 14 1.4702 -5.2847 -0.1422 21 1 0.3736 -5.6737 -1.0649 22 1 2.5832 -6.2612 -0.2568 23 1 0.9626 -5.2742 1.2532 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5141 27 1 6.1406 1.6541 0.2235 28 1 5.9593 5.9099 0.0005 29 1 3.5142 5.8158 -0.2212 30 1 1.4950 4.3335 0.1035 31 1 1.6299 2.8730 -0.7159 32 1 5.3307 0.0605 0.0001 33 1 4.1877 -2.1207 -0.0010 34 1 3.4624 -4.2292 -1.8625 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243484961.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:53 Heat of formation + Delta-G solvation = 25.960302 kcal Electronic energy + Delta-G solvation = -19568.061618 eV Core-core repulsion = 16490.104497 eV Total energy + Delta-G solvation = -3077.957121 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91980 -39.57904 -37.37308 -36.01954 -34.96837 -34.00185 -32.63059 -31.33132 -29.24207 -28.72616 -26.72523 -24.30484 -23.45086 -22.07881 -21.67659 -19.29454 -18.24381 -17.67452 -17.20456 -17.08387 -16.35222 -15.77788 -15.56786 -15.29957 -14.89364 -14.63105 -14.29134 -14.17718 -13.62833 -13.46293 -13.37882 -13.08204 -12.94642 -12.77186 -12.68765 -12.55166 -12.25856 -12.21605 -11.70176 -11.60515 -11.18608 -10.77754 -10.28053 -10.07060 -9.86660 -9.15567 -8.78567 -8.19144 -6.35487 0.05496 0.53116 0.94913 1.11807 1.36142 1.39183 1.50296 1.56613 2.15813 2.59493 2.98990 3.36170 3.69219 3.72334 3.95586 4.20176 4.34103 4.45914 4.56184 4.67871 4.82174 4.88738 5.00911 5.04828 5.07925 5.16208 5.23691 5.28988 5.41315 5.49491 5.55597 5.74680 5.87233 6.00489 6.04723 6.46286 6.71191 6.77468 6.94170 7.33250 7.67231 8.18657 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.023169 B = 0.004292 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.205855 B = 6522.017739 C = 7609.377623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.009 4.009 3 N -0.446 5.446 4 C 0.012 3.988 5 C -0.081 4.081 6 C -0.087 4.087 7 C -0.089 4.089 8 Cl -0.082 7.082 9 C -0.077 4.077 10 C -0.175 4.175 11 C 0.217 3.783 12 N -0.861 5.861 13 C -0.140 4.140 14 C -0.157 4.157 15 C 0.046 3.954 16 C -0.465 4.465 17 H 0.095 0.905 18 C 0.038 3.962 19 N -0.812 5.812 20 Si 0.982 3.018 21 H -0.258 1.258 22 H -0.270 1.270 23 H -0.255 1.255 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.123 0.877 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.398 0.602 31 H 0.405 0.595 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.981 9.387 1.730 9.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.154 4.154 3 N -0.156 5.156 4 C -0.123 4.123 5 C -0.086 4.086 6 C -0.108 4.108 7 C -0.117 4.117 8 Cl -0.054 7.054 9 C -0.096 4.096 10 C -0.198 4.198 11 C 0.109 3.891 12 N -0.407 5.407 13 C -0.160 4.160 14 C -0.182 4.182 15 C 0.041 3.959 16 C -0.494 4.494 17 H 0.113 0.887 18 C -0.180 4.180 19 N -0.436 5.436 20 Si 0.802 3.198 21 H -0.183 1.183 22 H -0.194 1.194 23 H -0.179 1.179 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.141 0.859 28 H 0.172 0.828 29 H 0.173 0.827 30 H 0.227 0.773 31 H 0.242 0.758 32 H 0.134 0.866 33 H 0.121 0.879 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.843 10.015 1.554 10.169 hybrid contribution 0.498 -1.991 0.019 2.053 sum 1.341 8.024 1.573 8.286 Atomic orbital electron populations 1.20248 0.88479 1.01982 1.01408 1.21634 0.96977 0.87868 1.08877 1.66570 1.08440 1.29274 1.11324 1.19108 0.89147 0.91531 1.12496 1.18400 0.92357 0.91171 1.06719 1.20855 0.92897 0.96998 1.00031 1.20487 0.84204 0.94755 1.12295 1.98313 1.11518 1.98734 1.96806 1.21020 0.93224 0.97242 0.98160 1.20948 0.93978 0.96640 1.08211 1.18053 0.85926 0.92243 0.92919 1.42702 1.02543 1.29838 1.65641 1.21474 0.99642 0.93258 1.01636 1.21160 0.95090 0.96431 1.05531 1.18701 0.92674 0.94442 0.90072 1.19826 1.04090 0.93325 1.32133 0.88706 1.26868 0.93757 1.05455 0.91879 1.69854 1.20674 1.34667 1.18432 0.85195 0.78988 0.75382 0.80253 1.18272 1.19429 1.17890 0.92024 0.91539 0.91548 0.85877 0.82807 0.82683 0.77264 0.75829 0.86596 0.87854 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.43 9.59 71.24 0.68 -1.74 16 2 C -0.01 -0.44 6.86 43.31 0.30 -0.14 16 3 N -0.45 -20.19 6.72 -171.04 -1.15 -21.34 16 4 C 0.01 0.54 6.72 41.89 0.28 0.82 16 5 C -0.08 -3.16 5.89 -19.92 -0.12 -3.28 16 6 C -0.09 -3.08 9.18 22.54 0.21 -2.87 16 7 C -0.09 -2.67 6.31 22.30 0.14 -2.53 16 8 Cl -0.08 -2.19 28.94 -2.72 -0.08 -2.27 16 9 C -0.08 -1.97 9.81 22.34 0.22 -1.76 16 10 C -0.18 -4.62 9.95 22.37 0.22 -4.40 16 11 C 0.22 7.23 6.76 38.62 0.26 7.49 16 12 N -0.86 -26.60 8.16 -50.82 -0.41 -27.02 16 13 C -0.14 -6.62 9.37 22.30 0.21 -6.41 16 14 C -0.16 -8.06 8.72 22.64 0.20 -7.86 16 15 C 0.05 2.33 5.52 -21.17 -0.12 2.22 16 16 C -0.47 -22.83 8.01 23.37 0.19 -22.64 16 17 H 0.10 4.35 7.03 -2.91 -0.02 4.33 16 18 C 0.04 1.78 5.08 85.27 0.43 2.21 16 19 N -0.81 -40.05 11.41 21.84 0.25 -39.80 16 20 Si 0.98 35.05 29.60 68.60 2.03 37.08 16 21 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 22 H -0.27 -9.35 7.11 99.48 0.71 -8.65 16 23 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 24 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 25 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.07 2.53 6.81 -2.39 -0.02 2.51 16 27 H 0.12 4.34 6.20 -2.91 -0.02 4.32 16 28 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 29 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 30 H 0.40 9.58 8.94 -92.71 -0.83 8.75 16 31 H 0.41 14.24 6.27 -92.71 -0.58 13.65 16 32 H 0.12 4.93 6.19 -2.91 -0.02 4.91 16 33 H 0.10 5.45 6.65 -2.91 -0.02 5.43 16 34 H 0.29 13.05 8.30 -92.71 -0.77 12.28 16 Total: -1.00 -56.24 302.70 3.50 -52.73 By element: Atomic # 1 Polarization: 41.76 SS G_CDS: -0.24 Total: 41.52 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 3.10 Total: -40.90 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -1.32 Total: -88.16 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 2.03 Total: 37.08 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.08 Total: -2.27 kcal Total: -56.24 3.50 -52.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243484961.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.691 kcal (2) G-P(sol) polarization free energy of solvation -56.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds