Wall clock time and date at job start Tue Mar 31 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76190 * 102.99918 * 2 1 4 4 C 1.39021 * 120.01095 * 359.97438 * 3 2 1 5 5 C 1.38360 * 120.14358 * 180.02562 * 4 3 2 6 6 F 1.35101 * 119.92936 * 179.97438 * 5 4 3 7 7 C 1.38346 * 120.14793 * 359.72952 * 5 4 3 8 8 C 1.39324 * 120.01630 * 0.55003 * 7 5 4 9 9 C 1.48422 * 120.07344 * 179.72349 * 8 7 5 10 10 C 1.39716 * 120.00009 * 179.45099 * 9 8 7 11 11 C 1.38394 * 120.38008 * 180.27457 * 10 9 8 12 12 C 1.37722 * 120.37714 * 359.97438 * 11 10 9 13 13 C 1.40749 * 119.98671 * 0.02562 * 12 11 10 14 14 C 1.41431 * 120.18376 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99719 * 204.47939 * 14 13 12 16 16 C 1.39933 * 119.99974 * 24.47968 * 14 13 12 17 17 N 1.30825 * 119.99934 * 17.90206 * 16 14 13 18 18 Si 1.86796 * 119.99718 * 197.89882 * 16 14 13 19 19 H 1.48501 * 109.47265 * 59.99942 * 18 16 14 20 20 H 1.48504 * 109.47021 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47159 * 299.99941 * 18 16 14 22 22 C 1.38724 * 119.99668 * 359.72608 * 9 8 7 23 23 C 1.38772 * 120.00741 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.47268 * 60.00142 * 1 2 3 25 25 H 1.09001 * 109.47219 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47320 * 300.00059 * 1 2 3 27 27 H 1.08000 * 119.92897 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.99212 * 180.29534 * 7 5 4 29 29 H 1.08003 * 119.81088 * 0.25287 * 10 9 8 30 30 H 1.07998 * 119.80950 * 179.97438 * 11 10 9 31 31 H 1.08004 * 120.00202 * 179.97438 * 12 11 10 32 32 H 0.96999 * 119.99919 * 180.02562 * 17 16 14 33 33 H 1.08004 * 120.18858 * 359.74238 * 22 9 8 34 34 H 1.07994 * 120.07422 * 359.95042 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7167 0.0000 4 6 1.1938 2.6651 -0.0005 5 6 1.5019 4.0139 -0.0011 6 9 0.5105 4.9318 -0.0021 7 6 2.8229 4.4249 0.0046 8 6 3.8468 3.4801 -0.0008 9 6 5.2644 3.9196 -0.0009 10 6 6.2900 2.9708 0.0053 11 6 7.6145 3.3719 0.0109 12 6 7.9367 4.7109 0.0099 13 6 6.9161 5.6800 0.0037 14 6 7.2423 7.0562 0.0021 15 1 6.5370 7.7787 0.3852 16 6 8.4789 7.4816 -0.4960 17 7 9.1807 6.6909 -1.2665 18 14 9.1273 9.1784 -0.0606 19 1 9.2769 9.2882 1.4127 20 1 10.4469 9.3855 -0.7095 21 1 8.1733 10.2108 -0.5395 22 6 5.5711 5.2725 -0.0015 23 6 3.5374 2.1227 -0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.1613 2.3482 -0.0005 28 1 3.0605 5.4784 0.0090 29 1 6.0477 1.9183 0.0061 30 1 8.3999 2.6306 0.0162 31 1 8.9725 5.0171 0.0148 32 1 10.0381 6.9856 -1.6114 33 1 4.7807 6.0085 -0.0060 34 1 4.3283 1.3873 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243551276.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:21 Heat of formation + Delta-G solvation = -21.836215 kcal Electronic energy + Delta-G solvation = -18954.106758 eV Core-core repulsion = 15856.200769 eV Total energy + Delta-G solvation = -3097.905989 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.00810 -40.48533 -38.83027 -35.68612 -33.46068 -32.20709 -31.38046 -30.37372 -29.10570 -27.25529 -24.65114 -24.12499 -22.15358 -21.95646 -19.65591 -18.33177 -17.79208 -17.41835 -17.09438 -16.82734 -16.71493 -16.29399 -15.63875 -15.14088 -15.05160 -14.66661 -14.56042 -14.24788 -14.01208 -13.93214 -13.59989 -13.32919 -13.20480 -12.84314 -12.82434 -12.45941 -12.34789 -12.13185 -11.60975 -11.34506 -11.22745 -11.15238 -10.86504 -10.17341 -9.44710 -8.86326 -8.65468 -8.44864 -6.37598 -0.27969 0.00961 0.46446 0.96829 1.18160 1.38120 1.40643 1.48827 1.53882 2.20134 2.44898 2.81693 3.15317 3.59176 3.74129 3.87189 3.94872 4.16899 4.28130 4.31558 4.33562 4.48929 4.55810 4.78399 4.85639 4.90809 5.01202 5.04306 5.09780 5.14737 5.29624 5.49813 5.61367 5.74715 5.95266 6.03903 6.12231 6.32685 6.64388 6.90898 6.97212 8.31756 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.026743 B = 0.003699 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.767625 B = 7568.054590 C = 8528.914463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.118 6.118 3 C -0.058 4.058 4 C -0.174 4.174 5 C 0.115 3.885 6 F -0.140 7.140 7 C -0.170 4.170 8 C 0.015 3.985 9 C -0.045 4.045 10 C -0.215 4.215 11 C -0.109 4.109 12 C -0.179 4.179 13 C 0.078 3.922 14 C -0.503 4.503 15 H 0.075 0.925 16 C 0.037 3.963 17 N -0.825 5.825 18 Si 0.981 3.019 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.261 1.261 22 C -0.219 4.219 23 C -0.113 4.113 24 H 0.094 0.906 25 H 0.132 0.868 26 H 0.095 0.905 27 H 0.163 0.837 28 H 0.133 0.867 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.289 0.711 33 H 0.101 0.899 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.437 -9.846 1.926 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.125 5.875 3 C -0.171 4.171 4 C -0.198 4.198 5 C 0.094 3.906 6 F -0.118 7.118 7 C -0.191 4.191 8 C 0.013 3.987 9 C -0.045 4.045 10 C -0.234 4.234 11 C -0.127 4.127 12 C -0.199 4.199 13 C 0.076 3.924 14 C -0.533 4.533 15 H 0.093 0.907 16 C -0.178 4.178 17 N -0.451 5.451 18 Si 0.802 3.198 19 H -0.185 1.185 20 H -0.191 1.191 21 H -0.185 1.185 22 C -0.238 4.238 23 C -0.136 4.136 24 H 0.113 0.887 25 H 0.150 0.850 26 H 0.114 0.886 27 H 0.180 0.820 28 H 0.151 0.849 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.638 -10.908 1.773 16.788 hybrid contribution -0.288 2.344 -0.025 2.361 sum -12.925 -8.565 1.748 15.604 Atomic orbital electron populations 1.23870 0.91476 1.08953 1.06771 1.85595 1.09956 0.99881 1.92100 1.21556 0.95239 0.98193 1.02076 1.21241 1.00756 0.90323 1.07498 1.17399 0.84257 0.86519 1.02425 1.91484 1.60287 1.66079 1.93995 1.21329 0.91081 1.01267 1.05418 1.18698 0.91980 0.92645 0.95418 1.18506 0.90920 0.93359 1.01764 1.20803 0.91954 0.98085 1.12519 1.20949 0.96215 0.95461 1.00063 1.21439 0.99179 0.92598 1.06656 1.17879 0.91460 0.94159 0.88911 1.19798 1.02000 0.93098 1.38374 0.90668 1.26720 0.95829 1.03525 0.91705 1.69856 1.12811 1.39439 1.22956 0.85271 0.78055 0.76842 0.79671 1.18495 1.19085 1.18487 1.21252 0.95731 0.94300 1.12514 1.21001 0.95335 0.94994 1.02267 0.88710 0.84967 0.88650 0.81977 0.84932 0.85766 0.86376 0.87766 0.90030 0.88095 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.15 113.37 1.04 -0.57 16 2 S -0.12 -2.39 22.56 -56.49 -1.27 -3.67 16 3 C -0.06 -1.54 6.11 22.59 0.14 -1.41 16 4 C -0.17 -4.38 9.34 22.49 0.21 -4.17 16 5 C 0.11 3.46 7.29 22.32 0.16 3.62 16 6 F -0.14 -4.10 17.26 44.97 0.78 -3.32 16 7 C -0.17 -5.96 9.40 22.56 0.21 -5.75 16 8 C 0.01 0.54 5.87 -20.07 -0.12 0.43 16 9 C -0.05 -2.00 5.87 -20.09 -0.12 -2.12 16 10 C -0.21 -9.14 9.43 22.66 0.21 -8.92 16 11 C -0.11 -4.95 10.01 22.18 0.22 -4.73 16 12 C -0.18 -9.40 8.69 22.76 0.20 -9.20 16 13 C 0.08 4.24 5.57 -21.32 -0.12 4.12 16 14 C -0.50 -27.32 9.05 23.47 0.21 -27.11 16 15 H 0.08 3.94 7.91 -2.91 -0.02 3.92 16 16 C 0.04 1.88 5.14 85.25 0.44 2.32 16 17 N -0.82 -43.11 10.96 21.82 0.24 -42.87 16 18 Si 0.98 38.26 29.59 68.60 2.03 40.29 16 19 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 20 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 21 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 22 C -0.22 -10.82 9.17 22.95 0.21 -10.61 16 23 C -0.11 -3.57 9.17 22.63 0.21 -3.37 16 24 H 0.09 0.95 7.74 -2.39 -0.02 0.94 16 25 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.09 0.95 7.74 -2.39 -0.02 0.93 16 27 H 0.16 2.98 5.86 -2.91 -0.02 2.96 16 28 H 0.13 4.79 6.19 -2.91 -0.02 4.77 16 29 H 0.12 4.45 6.18 -2.91 -0.02 4.43 16 30 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 31 H 0.10 5.68 6.15 -2.91 -0.02 5.67 16 32 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 33 H 0.10 4.76 6.19 -2.91 -0.02 4.74 16 34 H 0.14 4.26 6.18 -2.91 -0.02 4.24 16 Total: -1.00 -59.58 305.57 6.02 -53.56 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 1.14 Total: 23.48 kcal Atomic # 6 Polarization: -70.57 SS G_CDS: 3.11 Total: -67.47 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.24 Total: -42.87 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.32 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Atomic # 16 Polarization: -2.39 SS G_CDS: -1.27 Total: -3.67 kcal Total: -59.58 6.02 -53.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243551276.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.721 kcal (2) G-P(sol) polarization free energy of solvation -59.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds