Wall clock time and date at job start Tue Mar 31 2020 05:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80993 * 1 3 3 C 1.76200 * 100.00172 * 2 1 4 4 N 1.32611 * 119.15620 * 0.02871 * 3 2 1 5 5 C 1.32355 * 120.98569 * 179.97438 * 4 3 2 6 6 C 1.38334 * 119.30353 * 359.71974 * 5 4 3 7 7 C 1.39819 * 118.45667 * 0.53893 * 6 5 4 8 8 C 1.48138 * 120.51432 * 179.73780 * 7 6 5 9 9 C 1.39375 * 120.16791 * 359.71925 * 8 7 6 10 10 C 1.37964 * 119.93875 * 180.02562 * 9 8 7 11 11 C 1.38487 * 120.28429 * 359.97438 * 10 9 8 12 12 C 1.38071 * 120.34437 * 0.02562 * 11 10 9 13 13 C 1.38800 * 120.05352 * 359.97438 * 12 11 10 14 14 O 1.35619 * 120.14106 * 180.02562 * 13 12 11 15 15 C 1.34810 * 116.99937 * 354.40936 * 14 13 12 16 16 H 1.08003 * 120.00444 * 5.06637 * 15 14 13 17 17 C 1.38671 * 119.99553 * 185.06211 * 15 14 13 18 18 N 1.31540 * 120.00539 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99707 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47185 * 60.00166 * 19 17 15 21 21 H 1.48507 * 109.47018 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47326 * 299.99945 * 19 17 15 23 23 N 1.32405 * 119.16169 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47198 * 59.99753 * 1 2 3 25 25 H 1.09000 * 109.47117 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47238 * 299.99773 * 1 2 3 27 27 H 1.08002 * 120.34662 * 179.97438 * 5 4 3 28 28 H 1.08003 * 120.77495 * 180.29524 * 6 5 4 29 29 H 1.07998 * 120.03126 * 0.02562 * 9 8 7 30 30 H 1.08003 * 119.85702 * 180.25027 * 10 9 8 31 31 H 1.07997 * 119.82636 * 179.97438 * 11 10 9 32 32 H 1.07994 * 119.97796 * 179.97438 * 12 11 10 33 33 H 0.96995 * 120.00512 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.0877 2.5726 0.0006 5 6 1.2758 3.8827 0.0011 6 6 2.5661 4.3814 0.0070 7 6 3.6307 3.4750 0.0006 8 6 5.0308 3.9592 0.0006 9 6 5.2989 5.3269 0.0011 10 6 6.6046 5.7726 0.0006 11 6 7.6518 4.8664 0.0001 12 6 7.3996 3.5089 -0.0004 13 6 6.0915 3.0449 0.0001 14 8 5.8417 1.7119 0.0001 15 6 6.9039 0.8902 -0.1174 16 1 7.9040 1.2979 -0.1237 17 6 6.7125 -0.4786 -0.2301 18 7 5.4944 -0.9752 -0.2229 19 14 8.1843 -1.6171 -0.3937 20 1 9.0560 -1.4739 0.8000 21 1 7.7143 -3.0220 -0.4971 22 1 8.9527 -1.2607 -1.6133 23 7 3.3667 2.1698 0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 0.4308 4.5553 0.0012 28 1 2.7470 5.4462 0.0123 29 1 4.4854 6.0372 0.0019 30 1 6.8109 6.8327 0.0050 31 1 8.6711 5.2234 -0.0008 32 1 8.2208 2.8075 -0.0012 33 1 5.3605 -1.9326 -0.3014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243580684.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:43 Heat of formation + Delta-G solvation = 57.666429 kcal Electronic energy + Delta-G solvation = -19905.437437 eV Core-core repulsion = 16830.898903 eV Total energy + Delta-G solvation = -3074.538534 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.22446 -38.83787 -36.42216 -33.47614 -32.31182 -31.97371 -29.63572 -28.89482 -28.36369 -25.43484 -24.15390 -23.87466 -21.44290 -20.95680 -18.01659 -17.87918 -17.07658 -16.36525 -15.41204 -14.86166 -14.62811 -14.52781 -14.33010 -14.11840 -13.63245 -13.57064 -13.21045 -13.01558 -12.69674 -12.53099 -12.17176 -11.69465 -11.49821 -10.93050 -10.88943 -10.82264 -10.51160 -10.31814 -10.27068 -9.76474 -9.75500 -9.43044 -8.84535 -8.43756 -8.04802 -7.22971 -7.09818 -6.42800 -3.98984 1.09681 1.57567 1.89503 2.34101 2.46414 2.74284 3.12850 3.14314 3.16152 3.94209 4.22934 4.69462 4.70183 4.91284 5.08648 5.19059 5.25771 5.44198 5.47649 5.50662 5.62446 5.71184 5.81409 5.99458 6.06136 6.09359 6.32530 6.61050 6.67089 6.86109 7.00639 7.15393 7.28254 7.31334 7.62446 7.73080 7.94810 8.64562 8.96177 9.68349 10.68696 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.011098 B = 0.008497 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.421697 B = 3294.385221 C = 5797.924214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 S 0.047 5.953 3 C 0.297 3.703 4 N -0.557 5.557 5 C 0.150 3.850 6 C -0.257 4.257 7 C 0.254 3.746 8 C -0.163 4.163 9 C -0.037 4.037 10 C -0.230 4.230 11 C -0.054 4.054 12 C -0.238 4.238 13 C 0.176 3.824 14 O -0.110 6.110 15 C -0.403 4.403 16 H 0.091 0.909 17 C 0.049 3.951 18 N -0.816 5.816 19 Si 0.936 3.064 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.270 1.270 23 N -0.450 5.450 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.159 0.841 28 H 0.139 0.861 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.130 0.870 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 6.474 0.217 8.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.333 4.333 2 S 0.281 5.719 3 C -0.079 4.079 4 N -0.277 5.277 5 C -0.017 4.017 6 C -0.283 4.283 7 C 0.108 3.892 8 C -0.166 4.166 9 C -0.056 4.056 10 C -0.249 4.249 11 C -0.073 4.073 12 C -0.257 4.257 13 C 0.116 3.884 14 O -0.006 6.006 15 C -0.479 4.479 16 H 0.108 0.892 17 C -0.161 4.161 18 N -0.446 5.446 19 Si 0.760 3.240 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.196 1.196 23 N -0.166 5.166 24 H 0.101 0.899 25 H 0.115 0.885 26 H 0.101 0.899 27 H 0.176 0.824 28 H 0.157 0.843 29 H 0.134 0.866 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.148 0.852 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.094 3.980 0.221 6.468 hybrid contribution 0.202 1.664 -0.081 1.678 sum -4.892 5.643 0.140 7.470 Atomic orbital electron populations 1.23576 0.98247 1.05285 1.06216 1.86731 1.01550 0.93439 1.90167 1.25031 0.87316 1.00630 0.94945 1.68669 1.34859 1.04397 1.19802 1.22788 0.96111 0.91417 0.91344 1.22582 0.94358 1.01729 1.09588 1.20159 0.93204 0.88193 0.87659 1.17439 0.88182 0.92024 1.18932 1.20690 0.96546 0.92738 0.95636 1.20448 0.92391 0.98467 1.13585 1.20882 0.98103 0.92852 0.95425 1.21156 0.96701 0.95920 1.11942 1.19344 0.91774 0.85624 0.91658 1.84228 1.33996 1.09824 1.72597 1.21448 0.86171 0.87720 1.52518 0.89199 1.25297 0.98059 0.96401 0.96311 1.70096 1.19817 1.13525 1.41192 0.85871 0.80017 0.78918 0.79152 1.19561 1.20173 1.19563 1.69025 1.19402 1.15024 1.13163 0.89930 0.88497 0.89946 0.82370 0.84345 0.86608 0.87238 0.87276 0.85213 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.61 101.05 0.97 -1.35 16 2 S 0.05 0.93 22.89 -107.50 -2.46 -1.53 16 3 C 0.30 6.48 7.85 -90.92 -0.71 5.77 16 4 N -0.56 -10.50 9.12 -13.51 -0.12 -10.62 16 5 C 0.15 2.42 11.29 -17.29 -0.20 2.22 16 6 C -0.26 -4.39 9.53 -38.96 -0.37 -4.76 16 7 C 0.25 5.54 6.76 -82.63 -0.56 4.99 16 8 C -0.16 -3.54 5.89 -104.74 -0.62 -4.15 16 9 C -0.04 -0.64 9.44 -39.26 -0.37 -1.02 16 10 C -0.23 -3.83 10.03 -39.59 -0.40 -4.23 16 11 C -0.05 -0.95 10.03 -39.55 -0.40 -1.35 16 12 C -0.24 -5.08 9.16 -39.44 -0.36 -5.45 16 13 C 0.18 4.29 6.65 -38.70 -0.26 4.03 16 14 O -0.11 -3.07 7.65 0.51 0.00 -3.07 16 15 C -0.40 -10.93 9.49 30.89 0.29 -10.64 16 16 H 0.09 2.26 5.21 -52.48 -0.27 1.98 16 17 C 0.05 1.28 5.49 -17.52 -0.10 1.19 16 18 N -0.82 -22.62 13.67 55.48 0.76 -21.86 16 19 Si 0.94 19.94 29.55 -169.99 -5.02 14.92 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 N -0.45 -11.01 8.28 -10.00 -0.08 -11.09 16 24 H 0.08 1.15 8.11 -51.92 -0.42 0.73 16 25 H 0.10 1.12 8.14 -51.92 -0.42 0.70 16 26 H 0.08 1.14 8.11 -51.91 -0.42 0.72 16 27 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.14 1.86 6.32 -52.48 -0.33 1.53 16 29 H 0.12 1.64 6.27 -52.49 -0.33 1.31 16 30 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 31 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16 33 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 303.98 15.07 4.58 4.58 Total: -1.00 -31.26 303.98 -8.31 -39.58 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -2.90 Total: 3.84 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -3.07 Total: -14.75 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.55 Total: -43.57 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: 0.00 Total: -3.07 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.46 Total: -1.53 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.26 -8.31 -39.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580684.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.244 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds