Wall clock time and date at job start Tue Mar 31 2020 05:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80993 * 1 3 3 C 1.76200 * 100.00172 * 2 1 4 4 N 1.32611 * 119.15620 * 0.02871 * 3 2 1 5 5 C 1.32355 * 120.98569 * 179.97438 * 4 3 2 6 6 C 1.38334 * 119.30353 * 359.71974 * 5 4 3 7 7 C 1.39819 * 118.45667 * 0.53893 * 6 5 4 8 8 C 1.48138 * 120.51432 * 179.73780 * 7 6 5 9 9 C 1.39375 * 120.16791 * 359.71925 * 8 7 6 10 10 C 1.37964 * 119.93875 * 180.02562 * 9 8 7 11 11 C 1.38487 * 120.28429 * 359.97438 * 10 9 8 12 12 C 1.38071 * 120.34437 * 0.02562 * 11 10 9 13 13 C 1.38800 * 120.05352 * 359.97438 * 12 11 10 14 14 O 1.35619 * 120.14106 * 180.02562 * 13 12 11 15 15 C 1.34810 * 116.99937 * 354.40936 * 14 13 12 16 16 H 1.08003 * 120.00444 * 5.06637 * 15 14 13 17 17 C 1.38671 * 119.99553 * 185.06211 * 15 14 13 18 18 N 1.31540 * 120.00539 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99707 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47185 * 60.00166 * 19 17 15 21 21 H 1.48507 * 109.47018 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47326 * 299.99945 * 19 17 15 23 23 N 1.32405 * 119.16169 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47198 * 59.99753 * 1 2 3 25 25 H 1.09000 * 109.47117 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47238 * 299.99773 * 1 2 3 27 27 H 1.08002 * 120.34662 * 179.97438 * 5 4 3 28 28 H 1.08003 * 120.77495 * 180.29524 * 6 5 4 29 29 H 1.07998 * 120.03126 * 0.02562 * 9 8 7 30 30 H 1.08003 * 119.85702 * 180.25027 * 10 9 8 31 31 H 1.07997 * 119.82636 * 179.97438 * 11 10 9 32 32 H 1.07994 * 119.97796 * 179.97438 * 12 11 10 33 33 H 0.96995 * 120.00512 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.0877 2.5726 0.0006 5 6 1.2758 3.8827 0.0011 6 6 2.5661 4.3814 0.0070 7 6 3.6307 3.4750 0.0006 8 6 5.0308 3.9592 0.0006 9 6 5.2989 5.3269 0.0011 10 6 6.6046 5.7726 0.0006 11 6 7.6518 4.8664 0.0001 12 6 7.3996 3.5089 -0.0004 13 6 6.0915 3.0449 0.0001 14 8 5.8417 1.7119 0.0001 15 6 6.9039 0.8902 -0.1174 16 1 7.9040 1.2979 -0.1237 17 6 6.7125 -0.4786 -0.2301 18 7 5.4944 -0.9752 -0.2229 19 14 8.1843 -1.6171 -0.3937 20 1 9.0560 -1.4739 0.8000 21 1 7.7143 -3.0220 -0.4971 22 1 8.9527 -1.2607 -1.6133 23 7 3.3667 2.1698 0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 0.4308 4.5553 0.0012 28 1 2.7470 5.4462 0.0123 29 1 4.4854 6.0372 0.0019 30 1 6.8109 6.8327 0.0050 31 1 8.6711 5.2234 -0.0008 32 1 8.2208 2.8075 -0.0012 33 1 5.3605 -1.9326 -0.3014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243580684.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:43 Heat of formation + Delta-G solvation = 38.118535 kcal Electronic energy + Delta-G solvation = -19906.285097 eV Core-core repulsion = 16830.898903 eV Total energy + Delta-G solvation = -3075.386194 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.73181 -40.46161 -38.05281 -34.98326 -34.17294 -33.46118 -31.09805 -30.45085 -29.61195 -27.28224 -25.64474 -25.36804 -23.03727 -22.46588 -19.75086 -19.40918 -18.65953 -17.96604 -16.88082 -16.31970 -16.24022 -16.06647 -15.96679 -15.59133 -15.32999 -15.03568 -14.61882 -14.23802 -14.18014 -14.11285 -13.46429 -13.40409 -13.11456 -12.56014 -12.42696 -12.30583 -12.14609 -11.80448 -11.74864 -11.19650 -11.18167 -11.16660 -10.70390 -9.94936 -9.55806 -8.88197 -8.62445 -8.29894 -5.97857 -0.40194 0.15216 0.44053 0.77981 0.96848 1.36108 1.45019 1.46464 1.50410 2.20842 2.72200 3.02774 3.26368 3.32943 3.55976 3.61412 3.76607 4.11378 4.22673 4.34635 4.37457 4.39704 4.44970 4.56851 4.68938 4.84704 4.93739 5.06750 5.16809 5.22945 5.45398 5.62780 5.70880 5.76276 6.05678 6.18965 6.24358 7.06637 7.15658 7.90656 8.84837 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.011098 B = 0.008497 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.421697 B = 3294.385221 C = 5797.924214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.027 6.027 3 C 0.278 3.722 4 N -0.550 5.550 5 C 0.153 3.847 6 C -0.236 4.236 7 C 0.215 3.785 8 C -0.178 4.178 9 C -0.034 4.034 10 C -0.204 4.204 11 C -0.048 4.048 12 C -0.263 4.263 13 C 0.138 3.862 14 O -0.161 6.161 15 C -0.434 4.434 16 H 0.094 0.906 17 C -0.007 4.007 18 N -0.866 5.866 19 Si 1.007 2.993 20 H -0.263 1.263 21 H -0.272 1.272 22 H -0.263 1.263 23 N -0.502 5.502 24 H 0.087 0.913 25 H 0.125 0.875 26 H 0.088 0.912 27 H 0.217 0.783 28 H 0.186 0.814 29 H 0.162 0.838 30 H 0.160 0.840 31 H 0.147 0.853 32 H 0.118 0.882 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.144 10.651 0.191 12.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.207 5.793 3 C -0.098 4.098 4 N -0.270 5.270 5 C -0.014 4.014 6 C -0.261 4.261 7 C 0.069 3.931 8 C -0.180 4.180 9 C -0.053 4.053 10 C -0.223 4.223 11 C -0.067 4.067 12 C -0.282 4.282 13 C 0.082 3.918 14 O -0.062 6.062 15 C -0.510 4.510 16 H 0.111 0.889 17 C -0.210 4.210 18 N -0.499 5.499 19 Si 0.827 3.173 20 H -0.187 1.187 21 H -0.197 1.197 22 H -0.188 1.188 23 N -0.219 5.219 24 H 0.106 0.894 25 H 0.144 0.856 26 H 0.107 0.893 27 H 0.234 0.766 28 H 0.203 0.797 29 H 0.180 0.820 30 H 0.178 0.822 31 H 0.165 0.835 32 H 0.136 0.864 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.966 8.226 0.198 10.164 hybrid contribution 0.327 0.870 -0.059 0.931 sum -5.639 9.096 0.139 10.703 Atomic orbital electron populations 1.23567 0.93001 1.07301 1.06621 1.86873 1.07434 0.94575 1.90413 1.25053 0.87368 1.01156 0.96186 1.68741 1.33620 1.05629 1.19027 1.23793 0.97703 0.90922 0.88986 1.23022 0.93231 1.03157 1.06654 1.20603 0.94623 0.88475 0.89352 1.18063 0.88076 0.93596 1.18313 1.21234 0.98707 0.91352 0.93970 1.21110 0.91376 1.00683 1.09119 1.21357 1.00772 0.91208 0.93331 1.21280 0.95439 0.97848 1.13679 1.20123 0.93985 0.85509 0.92187 1.84239 1.34172 1.11216 1.76578 1.21801 0.86645 0.88594 1.53993 0.88889 1.26373 1.01031 0.97631 0.95985 1.70277 1.21900 1.13301 1.44391 0.84835 0.76443 0.76647 0.79357 1.18733 1.19685 1.18811 1.68939 1.21152 1.17254 1.14551 0.89392 0.85625 0.89338 0.76629 0.79701 0.82020 0.82224 0.83499 0.86444 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.61 113.37 1.09 -2.69 16 2 S -0.03 -1.13 22.89 -56.49 -1.29 -2.43 16 3 C 0.28 12.54 7.85 180.45 1.42 13.96 16 4 N -0.55 -19.98 9.12 -196.67 -1.79 -21.77 16 5 C 0.15 4.34 11.29 84.64 0.96 5.29 16 6 C -0.24 -7.21 9.53 22.68 0.22 -7.00 16 7 C 0.22 9.35 6.76 41.95 0.28 9.64 16 8 C -0.18 -7.66 5.89 -19.94 -0.12 -7.78 16 9 C -0.03 -1.05 9.44 22.48 0.21 -0.83 16 10 C -0.20 -5.74 10.03 22.26 0.22 -5.52 16 11 C -0.05 -1.57 10.03 22.29 0.22 -1.35 16 12 C -0.26 -11.49 9.16 22.36 0.20 -11.29 16 13 C 0.14 7.03 6.65 22.84 0.15 7.18 16 14 O -0.16 -9.76 7.65 -21.09 -0.16 -9.92 16 15 C -0.43 -25.59 9.49 67.92 0.64 -24.95 16 16 H 0.09 5.09 5.21 -2.91 -0.02 5.07 16 17 C -0.01 -0.42 5.49 84.84 0.47 0.05 16 18 N -0.87 -52.26 13.67 21.62 0.30 -51.96 16 19 Si 1.01 43.69 29.55 68.60 2.03 45.72 16 20 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 22 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 23 N -0.50 -25.74 8.28 -185.55 -1.54 -27.28 16 24 H 0.09 2.35 8.11 -2.39 -0.02 2.33 16 25 H 0.13 2.75 8.14 -2.40 -0.02 2.73 16 26 H 0.09 2.35 8.11 -2.39 -0.02 2.34 16 27 H 0.22 3.55 8.06 -2.91 -0.02 3.53 16 28 H 0.19 3.74 6.32 -2.91 -0.02 3.73 16 29 H 0.16 3.46 6.27 -2.91 -0.02 3.44 16 30 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 32 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 33 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -79.23 303.98 4.66 -74.57 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 1.15 Total: 18.35 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 5.97 Total: -25.28 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -3.03 Total: -101.01 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.16 Total: -9.92 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -1.29 Total: -2.43 kcal Total: -79.23 4.66 -74.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580684.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.691 kcal (2) G-P(sol) polarization free energy of solvation -79.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds