Wall clock time and date at job start Tue Mar 31 2020 05:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36259 * 120.05968 * 2 1 4 4 C 1.39931 * 120.11579 * 179.97438 * 3 2 1 5 5 C 1.47973 * 119.87606 * 179.97438 * 4 3 2 6 6 C 1.39648 * 120.11047 * 0.02562 * 5 4 3 7 7 C 1.37927 * 119.97912 * 179.97438 * 6 5 4 8 8 C 1.38433 * 120.18463 * 0.02562 * 7 6 5 9 9 Cl 1.73603 * 119.89311 * 180.02562 * 8 7 6 10 10 C 1.38986 * 120.21127 * 359.97438 * 8 7 6 11 11 O 1.35925 * 119.98162 * 179.97438 * 10 8 7 12 12 C 1.38391 * 120.02440 * 359.74779 * 10 8 7 13 13 C 1.39959 * 120.23889 * 359.97438 * 4 3 2 14 14 C 1.36224 * 120.12339 * 359.78195 * 13 4 3 15 15 C 1.40918 * 120.05977 * 179.97438 * 2 1 3 16 16 C 1.41024 * 120.11872 * 359.97438 * 15 2 1 17 17 H 1.08003 * 119.99891 * 334.49466 * 16 15 2 18 18 C 1.39997 * 120.00146 * 154.48919 * 16 15 2 19 19 N 1.30805 * 120.00142 * 334.60314 * 18 16 15 20 20 Si 1.86803 * 120.00094 * 154.60303 * 18 16 15 21 21 H 1.48494 * 109.47132 * 180.02562 * 20 18 16 22 22 H 1.48500 * 109.47261 * 300.00447 * 20 18 16 23 23 H 1.48504 * 109.46903 * 60.00104 * 20 18 16 24 24 H 1.09005 * 109.46988 * 270.01967 * 1 2 3 25 25 H 1.08997 * 109.47242 * 30.02108 * 1 2 3 26 26 H 1.08996 * 109.47274 * 150.02301 * 1 2 3 27 27 H 1.07996 * 119.94210 * 0.02562 * 3 2 1 28 28 H 1.08004 * 120.00916 * 359.95868 * 6 5 4 29 29 H 1.07991 * 119.91161 * 179.97438 * 7 6 5 30 30 H 0.96704 * 114.00175 * 90.00418 * 11 10 8 31 31 H 1.08005 * 120.09344 * 180.25278 * 12 10 8 32 32 H 1.08003 * 119.94305 * 180.02562 * 13 4 3 33 33 H 1.07997 * 120.06912 * 180.25997 * 14 13 4 34 34 H 0.96998 * 120.00106 * 354.17012 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1896 1.1793 0.0000 4 6 3.5889 1.1807 0.0005 5 6 4.3247 2.4645 0.0000 6 6 3.6250 3.6730 -0.0006 7 6 4.3136 4.8681 -0.0006 8 6 5.6979 4.8738 -0.0006 9 17 6.5570 6.3823 0.0001 10 6 6.4022 3.6755 0.0000 11 8 7.7614 3.6865 -0.0006 12 6 5.7201 2.4714 0.0058 13 6 4.2949 -0.0278 0.0016 14 6 3.6224 -1.2124 0.0066 15 6 2.2129 -1.2196 0.0005 16 6 1.5116 -2.4431 0.0016 17 1 0.5108 -2.4915 0.4048 18 6 2.1126 -3.5949 -0.5200 19 7 3.0529 -3.4902 -1.4232 20 14 1.5716 -5.2814 0.0739 21 1 2.3567 -6.3286 -0.6276 22 1 1.8012 -5.3882 1.5371 23 1 0.1270 -5.4681 -0.2153 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8901 -0.5134 27 1 1.6496 2.1146 0.0004 28 1 2.5449 3.6719 -0.0013 29 1 3.7714 5.8020 -0.0014 30 1 8.1551 3.6902 0.8827 31 1 6.2662 1.5396 0.0103 32 1 5.3749 -0.0211 0.0025 33 1 4.1681 -2.1444 0.0117 34 1 3.2753 -2.6217 -1.7934 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243581821.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:40 Heat of formation + Delta-G solvation = -28.509363 kcal Electronic energy + Delta-G solvation = -19231.354215 eV Core-core repulsion = 16118.742361 eV Total energy + Delta-G solvation = -3112.611854 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.60732 -38.21338 -36.52144 -36.21160 -34.21771 -32.31779 -30.64714 -29.90786 -28.35705 -26.36356 -24.98974 -22.65568 -22.46255 -20.58611 -19.74193 -18.14339 -17.85872 -16.58627 -15.67773 -15.24238 -14.94393 -14.46478 -14.11142 -13.94754 -13.53498 -13.01590 -12.92658 -12.69887 -12.39566 -11.99273 -11.89414 -11.65807 -11.61557 -11.37506 -11.21264 -11.09655 -10.69259 -10.65865 -10.52994 -10.30581 -9.71353 -9.63505 -9.28176 -8.73692 -8.51966 -7.84018 -7.50331 -7.23371 -4.64538 1.17227 1.48634 2.37020 2.60143 2.74356 3.01526 3.09691 3.21746 3.81089 3.86698 4.26658 4.45840 5.01633 5.27535 5.35314 5.48166 5.60265 5.78954 5.87024 6.02672 6.14080 6.17496 6.34661 6.44778 6.46468 6.52640 6.60713 6.75479 6.88004 6.97019 7.00062 7.17558 7.47975 7.52945 7.64387 7.70383 7.77082 7.91591 8.06194 8.47541 8.59626 9.73894 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.033464 B = 0.003520 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.525966 B = 7952.571184 C = 8675.492846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.203 4.203 3 C -0.046 4.046 4 C -0.223 4.223 5 C 0.050 3.950 6 C -0.148 4.148 7 C -0.083 4.083 8 C -0.106 4.106 9 Cl -0.083 7.083 10 C 0.127 3.873 11 O -0.492 6.492 12 C -0.165 4.165 13 C -0.053 4.053 14 C -0.225 4.225 15 C 0.105 3.895 16 C -0.488 4.488 17 H 0.085 0.915 18 C 0.034 3.966 19 N -0.774 5.774 20 Si 1.065 2.935 21 H -0.271 1.271 22 H -0.272 1.272 23 H -0.273 1.273 24 H 0.044 0.956 25 H 0.040 0.960 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.387 0.613 31 H 0.134 0.866 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.849 8.362 3.432 9.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.204 4.204 3 C -0.065 4.065 4 C -0.224 4.224 5 C 0.050 3.950 6 C -0.166 4.166 7 C -0.102 4.102 8 C -0.133 4.133 9 Cl -0.054 7.054 10 C 0.081 3.919 11 O -0.302 6.302 12 C -0.184 4.184 13 C -0.072 4.072 14 C -0.244 4.244 15 C 0.102 3.898 16 C -0.514 4.514 17 H 0.103 0.897 18 C -0.190 4.190 19 N -0.395 5.395 20 Si 0.888 3.112 21 H -0.196 1.196 22 H -0.197 1.197 23 H -0.198 1.198 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.242 0.758 31 H 0.151 0.849 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.220 6.865 2.612 7.673 hybrid contribution -0.018 1.893 0.609 1.988 sum 2.201 8.758 3.221 9.587 Atomic orbital electron populations 1.20416 0.93121 1.00786 0.99939 1.19395 0.94655 0.92789 1.13574 1.20302 0.92716 0.96246 0.97203 1.17896 0.92504 0.90206 1.21816 1.18918 0.91693 0.93326 0.91101 1.21159 1.00159 0.90890 1.04408 1.20762 0.91323 0.98777 0.99349 1.21145 0.92619 0.85782 1.13720 1.98314 1.77742 1.32019 1.97363 1.18042 0.82802 0.90639 1.00375 1.84828 1.15745 1.96372 1.33210 1.21395 0.94147 0.96876 1.05970 1.20458 0.97437 0.92284 0.97006 1.20843 0.94359 0.96704 1.12454 1.17664 0.91705 0.92337 0.88119 1.20807 1.03221 0.93704 1.33639 0.89697 1.27232 0.92721 1.05899 0.93155 1.70447 1.21247 1.32117 1.15706 0.83619 0.77125 0.73099 0.77384 1.19568 1.19695 1.19801 0.93769 0.94075 0.92028 0.88608 0.85239 0.85444 0.75777 0.84870 0.88726 0.87460 0.88218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.64 9.39 36.01 0.34 -1.30 16 2 C -0.20 -4.51 5.90 -104.32 -0.62 -5.13 16 3 C -0.05 -0.97 9.00 -39.66 -0.36 -1.32 16 4 C -0.22 -4.65 5.90 -104.63 -0.62 -5.27 16 5 C 0.05 0.92 5.88 -104.90 -0.62 0.30 16 6 C -0.15 -2.39 9.42 -39.17 -0.37 -2.76 16 7 C -0.08 -1.23 9.81 -39.62 -0.39 -1.61 16 8 C -0.11 -1.61 6.34 -39.23 -0.25 -1.86 16 9 Cl -0.08 -1.13 28.49 -51.86 -1.48 -2.60 16 10 C 0.13 2.00 6.69 -39.25 -0.26 1.74 16 11 O -0.49 -6.87 12.95 -19.50 -0.25 -7.12 16 12 C -0.17 -2.83 9.36 -39.04 -0.37 -3.20 16 13 C -0.05 -1.16 9.36 -39.66 -0.37 -1.53 16 14 C -0.22 -5.33 7.89 -39.28 -0.31 -5.64 16 15 C 0.11 2.54 5.29 -106.80 -0.57 1.98 16 16 C -0.49 -11.66 8.05 -37.87 -0.30 -11.97 16 17 H 0.08 1.95 6.91 -52.48 -0.36 1.59 16 18 C 0.03 0.80 4.93 -17.33 -0.09 0.71 16 19 N -0.77 -18.96 12.31 55.55 0.68 -18.28 16 20 Si 1.07 19.59 30.00 -169.99 -5.10 14.49 16 21 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 22 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 23 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 26 H 0.06 1.20 6.76 -51.93 -0.35 0.85 16 27 H 0.10 1.74 6.17 -52.49 -0.32 1.41 16 28 H 0.13 1.92 6.18 -52.48 -0.32 1.60 16 29 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.39 3.59 9.06 45.56 0.41 4.01 16 31 H 0.13 2.22 6.18 -52.48 -0.32 1.89 16 32 H 0.09 1.85 6.17 -52.48 -0.32 1.53 16 33 H 0.11 2.62 6.50 -52.49 -0.34 2.28 16 34 H 0.30 7.68 6.70 -40.82 -0.27 7.41 16 LS Contribution 303.18 15.07 4.57 4.57 Total: -1.00 -25.88 303.18 -8.99 -34.87 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -2.27 Total: 10.93 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: -5.14 Total: -36.86 kcal Atomic # 7 Polarization: -18.96 SS G_CDS: 0.68 Total: -18.28 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.25 Total: -7.12 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.10 Total: 14.49 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.48 Total: -2.60 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -25.88 -8.99 -34.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243581821.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.356 kcal (2) G-P(sol) polarization free energy of solvation -25.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds