Wall clock time and date at job start Tue Mar 31 2020 05:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36259 * 120.05968 * 2 1 4 4 C 1.39931 * 120.11579 * 179.97438 * 3 2 1 5 5 C 1.47973 * 119.87606 * 179.97438 * 4 3 2 6 6 C 1.39648 * 120.11047 * 0.02562 * 5 4 3 7 7 C 1.37927 * 119.97912 * 179.97438 * 6 5 4 8 8 C 1.38433 * 120.18463 * 0.02562 * 7 6 5 9 9 Cl 1.73603 * 119.89311 * 180.02562 * 8 7 6 10 10 C 1.38986 * 120.21127 * 359.97438 * 8 7 6 11 11 O 1.35925 * 119.98162 * 179.97438 * 10 8 7 12 12 C 1.38391 * 120.02440 * 359.74779 * 10 8 7 13 13 C 1.39959 * 120.23889 * 359.97438 * 4 3 2 14 14 C 1.36224 * 120.12339 * 359.78195 * 13 4 3 15 15 C 1.40918 * 120.05977 * 179.97438 * 2 1 3 16 16 C 1.41024 * 120.11872 * 359.97438 * 15 2 1 17 17 H 1.08003 * 119.99891 * 334.49466 * 16 15 2 18 18 C 1.39997 * 120.00146 * 154.48919 * 16 15 2 19 19 N 1.30805 * 120.00142 * 334.60314 * 18 16 15 20 20 Si 1.86803 * 120.00094 * 154.60303 * 18 16 15 21 21 H 1.48494 * 109.47132 * 180.02562 * 20 18 16 22 22 H 1.48500 * 109.47261 * 300.00447 * 20 18 16 23 23 H 1.48504 * 109.46903 * 60.00104 * 20 18 16 24 24 H 1.09005 * 109.46988 * 270.01967 * 1 2 3 25 25 H 1.08997 * 109.47242 * 30.02108 * 1 2 3 26 26 H 1.08996 * 109.47274 * 150.02301 * 1 2 3 27 27 H 1.07996 * 119.94210 * 0.02562 * 3 2 1 28 28 H 1.08004 * 120.00916 * 359.95868 * 6 5 4 29 29 H 1.07991 * 119.91161 * 179.97438 * 7 6 5 30 30 H 0.96704 * 114.00175 * 90.00418 * 11 10 8 31 31 H 1.08005 * 120.09344 * 180.25278 * 12 10 8 32 32 H 1.08003 * 119.94305 * 180.02562 * 13 4 3 33 33 H 1.07997 * 120.06912 * 180.25997 * 14 13 4 34 34 H 0.96998 * 120.00106 * 354.17012 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1896 1.1793 0.0000 4 6 3.5889 1.1807 0.0005 5 6 4.3247 2.4645 0.0000 6 6 3.6250 3.6730 -0.0006 7 6 4.3136 4.8681 -0.0006 8 6 5.6979 4.8738 -0.0006 9 17 6.5570 6.3823 0.0001 10 6 6.4022 3.6755 0.0000 11 8 7.7614 3.6865 -0.0006 12 6 5.7201 2.4714 0.0058 13 6 4.2949 -0.0278 0.0016 14 6 3.6224 -1.2124 0.0066 15 6 2.2129 -1.2196 0.0005 16 6 1.5116 -2.4431 0.0016 17 1 0.5108 -2.4915 0.4048 18 6 2.1126 -3.5949 -0.5200 19 7 3.0529 -3.4902 -1.4232 20 14 1.5716 -5.2814 0.0739 21 1 2.3567 -6.3286 -0.6276 22 1 1.8012 -5.3882 1.5371 23 1 0.1270 -5.4681 -0.2153 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8901 -0.5134 27 1 1.6496 2.1146 0.0004 28 1 2.5449 3.6719 -0.0013 29 1 3.7714 5.8020 -0.0014 30 1 8.1551 3.6902 0.8827 31 1 6.2662 1.5396 0.0103 32 1 5.3749 -0.0211 0.0025 33 1 4.1681 -2.1444 0.0117 34 1 3.2753 -2.6217 -1.7934 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243581821.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:39 Heat of formation + Delta-G solvation = -40.917041 kcal Electronic energy + Delta-G solvation = -19231.892252 eV Core-core repulsion = 16118.742361 eV Total energy + Delta-G solvation = -3113.149892 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.94112 -39.77508 -37.76015 -37.40991 -35.84664 -33.88357 -32.21675 -31.22501 -29.86765 -27.95516 -26.60684 -24.01727 -23.92161 -22.11983 -21.31016 -19.75888 -19.18486 -17.86645 -17.04204 -16.61139 -16.46636 -15.98989 -15.60870 -15.38401 -14.87670 -14.60476 -14.39839 -14.00330 -13.96013 -13.53872 -13.33548 -13.06966 -13.00834 -12.86135 -12.65600 -12.47635 -12.10293 -12.00908 -11.95670 -11.60516 -11.29037 -11.27731 -10.93485 -10.16376 -9.81172 -9.55118 -9.22426 -8.83787 -6.42364 -0.19628 0.23657 0.99326 1.02473 1.17415 1.51128 1.63863 1.79154 2.29869 2.44856 2.83834 3.12935 3.55824 3.78031 3.96348 4.14376 4.28749 4.29309 4.39691 4.57357 4.69120 4.81895 4.86856 4.97304 5.01109 5.10843 5.19625 5.21727 5.24457 5.42554 5.46708 5.67371 5.72583 5.82957 5.96372 6.09543 6.19965 6.34419 6.71003 6.74668 6.88743 7.95215 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.033464 B = 0.003520 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.525966 B = 7952.571184 C = 8675.492846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.217 4.217 3 C -0.056 4.056 4 C -0.211 4.211 5 C 0.022 3.978 6 C -0.141 4.141 7 C -0.078 4.078 8 C -0.101 4.101 9 Cl -0.063 7.063 10 C 0.126 3.874 11 O -0.497 6.497 12 C -0.170 4.170 13 C -0.067 4.067 14 C -0.244 4.244 15 C 0.077 3.923 16 C -0.525 4.525 17 H 0.085 0.915 18 C 0.002 3.998 19 N -0.805 5.805 20 Si 1.114 2.886 21 H -0.274 1.274 22 H -0.264 1.264 23 H -0.254 1.254 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.128 0.872 28 H 0.146 0.854 29 H 0.159 0.841 30 H 0.408 0.592 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.715 11.201 4.065 12.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.218 4.218 3 C -0.074 4.074 4 C -0.212 4.212 5 C 0.021 3.979 6 C -0.159 4.159 7 C -0.097 4.097 8 C -0.128 4.128 9 Cl -0.034 7.034 10 C 0.081 3.919 11 O -0.310 6.310 12 C -0.189 4.189 13 C -0.085 4.085 14 C -0.263 4.263 15 C 0.074 3.926 16 C -0.552 4.552 17 H 0.103 0.897 18 C -0.215 4.215 19 N -0.428 5.428 20 Si 0.931 3.069 21 H -0.199 1.199 22 H -0.188 1.188 23 H -0.178 1.178 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.145 0.855 28 H 0.163 0.837 29 H 0.177 0.823 30 H 0.267 0.733 31 H 0.148 0.852 32 H 0.126 0.874 33 H 0.106 0.894 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.093 9.732 3.263 10.476 hybrid contribution 0.266 1.496 0.451 1.585 sum 2.359 11.228 3.714 12.059 Atomic orbital electron populations 1.20400 0.91077 1.01403 1.00862 1.19849 0.96471 0.92624 1.12866 1.20644 0.92881 0.97073 0.96827 1.18262 0.93026 0.91040 1.18910 1.18900 0.92207 0.92975 0.93774 1.21354 1.01038 0.90451 1.03045 1.21075 0.91190 0.99486 0.97916 1.21382 0.93199 0.86460 1.11754 1.98331 1.77395 1.30551 1.97160 1.18031 0.83571 0.90391 0.99955 1.84780 1.14774 1.96247 1.35195 1.21461 0.93986 0.97577 1.05833 1.20671 0.98330 0.92280 0.97249 1.20811 0.94712 0.96705 1.14105 1.18007 0.92087 0.93584 0.88886 1.20901 1.03732 0.94527 1.36050 0.89663 1.28501 0.91893 1.09054 0.92099 1.70558 1.23647 1.30781 1.17765 0.83036 0.77664 0.69039 0.77173 1.19867 1.18829 1.17776 0.92571 0.91579 0.93215 0.85476 0.83667 0.82337 0.73272 0.85237 0.87392 0.89440 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.02 9.39 71.24 0.67 -2.35 16 2 C -0.22 -9.69 5.90 -19.67 -0.12 -9.81 16 3 C -0.06 -2.28 9.00 22.22 0.20 -2.08 16 4 C -0.21 -8.70 5.90 -19.87 -0.12 -8.81 16 5 C 0.02 0.76 5.88 -20.04 -0.12 0.64 16 6 C -0.14 -4.07 9.42 22.54 0.21 -3.86 16 7 C -0.08 -1.97 9.81 22.24 0.22 -1.75 16 8 C -0.10 -2.70 6.34 22.50 0.14 -2.56 16 9 Cl -0.06 -1.47 28.49 -2.72 -0.08 -1.55 16 10 C 0.13 3.64 6.69 22.49 0.15 3.79 16 11 O -0.50 -12.52 12.95 -92.71 -1.20 -13.72 16 12 C -0.17 -5.55 9.36 22.62 0.21 -5.34 16 13 C -0.07 -3.00 9.36 22.22 0.21 -2.79 16 14 C -0.24 -12.24 7.89 22.47 0.18 -12.06 16 15 C 0.08 3.91 5.29 -21.27 -0.11 3.79 16 16 C -0.53 -26.35 8.05 23.38 0.19 -26.17 16 17 H 0.09 4.09 6.91 -2.91 -0.02 4.07 16 18 C 0.00 0.12 4.93 85.27 0.42 0.54 16 19 N -0.81 -41.97 12.31 21.84 0.27 -41.70 16 20 Si 1.11 40.71 30.00 68.60 2.06 42.76 16 21 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 22 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 23 H -0.25 -8.39 7.11 99.48 0.71 -7.68 16 24 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 25 H 0.07 2.09 8.08 -2.39 -0.02 2.07 16 26 H 0.05 1.95 6.76 -2.39 -0.02 1.94 16 27 H 0.13 4.23 6.17 -2.91 -0.02 4.22 16 28 H 0.15 3.70 6.18 -2.91 -0.02 3.68 16 29 H 0.16 3.03 8.06 -2.92 -0.02 3.00 16 30 H 0.41 6.38 9.06 -74.05 -0.67 5.71 16 31 H 0.13 4.24 6.18 -2.91 -0.02 4.23 16 32 H 0.11 4.37 6.17 -2.91 -0.02 4.35 16 33 H 0.09 4.62 6.50 -2.91 -0.02 4.60 16 34 H 0.29 15.60 6.70 -92.71 -0.62 14.98 16 Total: -1.00 -57.70 303.18 4.02 -53.68 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.64 Total: 29.33 kcal Atomic # 6 Polarization: -71.14 SS G_CDS: 2.33 Total: -68.81 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.27 Total: -41.70 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -1.20 Total: -13.72 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.06 Total: 42.76 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -57.70 4.02 -53.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243581821.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.762 kcal (2) G-P(sol) polarization free energy of solvation -57.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds