Wall clock time and date at job start Tue Mar 31 2020 05:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76201 * 102.99834 * 2 1 4 4 C 1.39684 * 120.04436 * 180.02562 * 3 2 1 5 5 C 1.38247 * 118.00450 * 180.02562 * 4 3 2 6 6 C 1.40009 * 117.97489 * 359.97438 * 5 4 3 7 7 C 1.48183 * 120.10211 * 180.02562 * 6 5 4 8 8 C 1.39344 * 120.16248 * 359.97438 * 7 6 5 9 9 C 1.37997 * 119.93830 * 179.97438 * 8 7 6 10 10 C 1.38457 * 120.27787 * 0.02562 * 9 8 7 11 11 C 1.38103 * 120.33533 * 359.97438 * 10 9 8 12 12 C 1.38756 * 120.05539 * 0.02562 * 11 10 9 13 13 O 1.35647 * 120.13994 * 179.97438 * 12 11 10 14 14 C 1.34813 * 117.00069 * 354.40242 * 13 12 11 15 15 H 1.08001 * 119.99800 * 5.05890 * 14 13 12 16 16 C 1.38642 * 119.99952 * 185.06826 * 14 13 12 17 17 N 1.31558 * 120.00200 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99898 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47598 * 59.99240 * 18 16 14 20 20 H 1.48503 * 109.47036 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46789 * 299.98979 * 18 16 14 22 22 N 1.32648 * 119.79949 * 0.27006 * 6 5 4 23 23 N 1.28345 * 122.12858 * 359.42970 * 22 6 5 24 24 H 1.08996 * 109.47427 * 300.00078 * 1 2 3 25 25 H 1.09002 * 109.46990 * 60.00315 * 1 2 3 26 26 H 1.08996 * 109.47282 * 180.02562 * 1 2 3 27 27 H 1.07994 * 120.99910 * 0.03653 * 4 3 2 28 28 H 1.08004 * 121.01336 * 179.97438 * 5 4 3 29 29 H 1.07996 * 120.03225 * 359.96214 * 8 7 6 30 30 H 1.07996 * 119.85758 * 180.02562 * 9 8 7 31 31 H 1.08003 * 119.82644 * 179.71308 * 10 9 8 32 32 H 1.08002 * 119.97405 * 179.97438 * 11 10 9 33 33 H 0.97009 * 120.00087 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5458 2.1263 -0.0005 5 6 3.8086 3.4836 0.0000 6 6 2.7195 4.3634 0.0006 7 6 2.9470 5.8277 0.0006 8 6 4.2450 6.3346 0.0007 9 6 4.4515 7.6990 0.0002 10 6 3.3738 8.5682 0.0002 11 6 2.0826 8.0782 0.0001 12 6 1.8589 6.7088 0.0006 13 8 0.5914 6.2257 0.0011 14 6 -0.4062 7.1248 0.1182 15 1 -0.1829 8.1815 0.1239 16 6 -1.7188 6.6930 0.2315 17 7 -1.9908 5.4059 0.2242 18 14 -3.1011 7.9388 0.3945 19 1 -3.1156 8.8214 -0.7996 20 1 -4.3999 7.2264 0.4987 21 1 -2.8869 8.7591 1.6138 22 7 1.4834 3.8823 0.0059 23 7 1.2415 2.6219 -0.0001 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 4.3490 1.4043 -0.0016 28 1 4.8232 3.8540 0.0001 29 1 5.0886 5.6603 0.0013 30 1 5.4581 8.0904 -0.0002 31 1 3.5438 9.6347 0.0045 32 1 1.2462 8.7615 0.0005 33 1 -2.9093 5.1037 0.3031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243584002.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:24 Heat of formation + Delta-G solvation = 64.039872 kcal Electronic energy + Delta-G solvation = -19717.018300 eV Core-core repulsion = 16642.756140 eV Total energy + Delta-G solvation = -3074.262161 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.31911 -38.87452 -36.45118 -33.11890 -32.60777 -32.24117 -29.62358 -28.89382 -28.44844 -25.48753 -24.35971 -23.98280 -21.42220 -21.00285 -18.12586 -17.71524 -17.29315 -16.79366 -15.74330 -14.77681 -14.67096 -14.60572 -14.34862 -14.08862 -13.64022 -13.56755 -13.36513 -13.16175 -12.66049 -12.54670 -12.15609 -11.70830 -11.51427 -11.18488 -10.94309 -10.82476 -10.76236 -10.48593 -10.28659 -10.13645 -9.86011 -9.39682 -8.88357 -8.86426 -8.25816 -7.56439 -7.02701 -6.44124 -4.01300 0.97407 1.35017 1.65347 2.26596 2.35043 2.41844 3.11434 3.13110 3.15186 3.92730 4.05489 4.62912 4.69761 4.93598 4.97307 5.08137 5.14483 5.20971 5.32555 5.44889 5.46552 5.60686 5.74277 5.91220 6.01924 6.06107 6.07945 6.39714 6.50662 6.60391 6.75728 7.02220 7.12560 7.27763 7.32490 7.70772 7.93074 8.94680 9.37705 9.66285 10.67781 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.012273 B = 0.006571 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.889826 B = 4259.836978 C = 6522.416020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.086 6.086 3 C 0.020 3.980 4 C -0.103 4.103 5 C -0.117 4.117 6 C 0.129 3.871 7 C -0.150 4.150 8 C -0.044 4.044 9 C -0.225 4.225 10 C -0.057 4.057 11 C -0.235 4.235 12 C 0.172 3.828 13 O -0.117 6.117 14 C -0.400 4.400 15 H 0.092 0.908 16 C 0.046 3.954 17 N -0.823 5.823 18 Si 0.937 3.063 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.269 1.269 22 N -0.174 5.174 23 N -0.228 5.228 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.144 0.856 28 H 0.147 0.853 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.921 -4.700 -0.218 10.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.148 5.852 3 C -0.235 4.235 4 C -0.136 4.136 5 C -0.148 4.148 6 C -0.014 4.014 7 C -0.154 4.154 8 C -0.064 4.064 9 C -0.245 4.245 10 C -0.076 4.076 11 C -0.254 4.254 12 C 0.112 3.888 13 O -0.014 6.014 14 C -0.476 4.476 15 H 0.109 0.891 16 C -0.163 4.163 17 N -0.453 5.453 18 Si 0.762 3.238 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.194 1.194 22 N -0.019 5.019 23 N -0.074 5.074 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.118 0.882 27 H 0.162 0.838 28 H 0.165 0.835 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.148 0.852 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.528 -5.843 -0.216 9.531 hybrid contribution 0.088 1.552 0.079 1.557 sum 7.616 -4.290 -0.138 8.742 Atomic orbital electron populations 1.23457 0.93009 1.05691 1.07540 1.84985 1.08708 0.99063 1.92478 1.24605 0.94575 1.00323 1.04016 1.21670 0.95713 0.96394 0.99776 1.22200 1.00694 0.92778 0.99099 1.21428 0.90514 0.94832 0.94657 1.17307 0.92027 0.87927 1.18095 1.20664 0.93985 0.95265 0.96481 1.20448 0.97981 0.92869 1.13154 1.20876 0.92369 0.98587 0.95735 1.21149 0.97518 0.95081 1.11698 1.19323 0.86271 0.91160 0.91998 1.84207 1.09351 1.34707 1.73138 1.21437 0.84833 0.88950 1.52357 0.89051 1.25336 0.97581 0.97018 0.96329 1.70148 1.20397 1.13104 1.41663 0.85849 0.79341 0.79418 0.79234 1.19447 1.20199 1.19448 1.73752 1.17669 1.03641 1.06816 1.73782 1.27823 0.96760 1.09067 0.89106 0.89132 0.88158 0.83837 0.83491 0.86710 0.87215 0.87239 0.85175 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 10.04 101.05 1.01 -0.74 16 2 S -0.09 -1.25 22.57 -107.50 -2.43 -3.68 16 3 C 0.02 0.36 7.08 -16.69 -0.12 0.24 16 4 C -0.10 -1.61 9.95 -39.04 -0.39 -1.99 16 5 C -0.12 -1.94 9.54 -38.92 -0.37 -2.31 16 6 C 0.13 2.77 6.81 -82.77 -0.56 2.21 16 7 C -0.15 -3.21 5.89 -104.74 -0.62 -3.82 16 8 C -0.04 -0.77 9.43 -39.26 -0.37 -1.14 16 9 C -0.23 -3.69 10.03 -39.59 -0.40 -4.09 16 10 C -0.06 -1.00 10.03 -39.55 -0.40 -1.39 16 11 C -0.24 -4.99 9.16 -39.44 -0.36 -5.35 16 12 C 0.17 4.17 6.65 -38.73 -0.26 3.91 16 13 O -0.12 -3.29 7.62 0.42 0.00 -3.29 16 14 C -0.40 -10.98 9.49 30.88 0.29 -10.68 16 15 H 0.09 2.30 5.21 -52.49 -0.27 2.02 16 16 C 0.05 1.24 5.49 -17.52 -0.10 1.14 16 17 N -0.82 -23.79 13.67 55.48 0.76 -23.03 16 18 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 N -0.17 -4.34 9.34 33.37 0.31 -4.03 16 23 N -0.23 -5.17 10.60 31.52 0.33 -4.84 16 24 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.09 1.35 8.14 -51.92 -0.42 0.93 16 26 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.15 1.83 6.29 -52.48 -0.33 1.50 16 29 H 0.12 1.55 6.24 -52.49 -0.33 1.22 16 30 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 32 H 0.13 2.72 5.64 -52.49 -0.30 2.43 16 33 H 0.27 7.23 8.31 -40.82 -0.34 6.90 16 LS Contribution 304.54 15.07 4.59 4.59 Total: -1.00 -32.07 304.54 -6.98 -39.05 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -2.90 Total: 4.10 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -2.63 Total: -24.01 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 1.40 Total: -31.90 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: 0.00 Total: -3.29 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: -1.25 SS G_CDS: -2.43 Total: -3.68 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.07 -6.98 -39.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243584002.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.091 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds