Wall clock time and date at job start Tue Mar 31 2020 05:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76201 * 102.99834 * 2 1 4 4 C 1.39684 * 120.04436 * 180.02562 * 3 2 1 5 5 C 1.38247 * 118.00450 * 180.02562 * 4 3 2 6 6 C 1.40009 * 117.97489 * 359.97438 * 5 4 3 7 7 C 1.48183 * 120.10211 * 180.02562 * 6 5 4 8 8 C 1.39344 * 120.16248 * 359.97438 * 7 6 5 9 9 C 1.37997 * 119.93830 * 179.97438 * 8 7 6 10 10 C 1.38457 * 120.27787 * 0.02562 * 9 8 7 11 11 C 1.38103 * 120.33533 * 359.97438 * 10 9 8 12 12 C 1.38756 * 120.05539 * 0.02562 * 11 10 9 13 13 O 1.35647 * 120.13994 * 179.97438 * 12 11 10 14 14 C 1.34813 * 117.00069 * 354.40242 * 13 12 11 15 15 H 1.08001 * 119.99800 * 5.05890 * 14 13 12 16 16 C 1.38642 * 119.99952 * 185.06826 * 14 13 12 17 17 N 1.31558 * 120.00200 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99898 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47598 * 59.99240 * 18 16 14 20 20 H 1.48503 * 109.47036 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46789 * 299.98979 * 18 16 14 22 22 N 1.32648 * 119.79949 * 0.27006 * 6 5 4 23 23 N 1.28345 * 122.12858 * 359.42970 * 22 6 5 24 24 H 1.08996 * 109.47427 * 300.00078 * 1 2 3 25 25 H 1.09002 * 109.46990 * 60.00315 * 1 2 3 26 26 H 1.08996 * 109.47282 * 180.02562 * 1 2 3 27 27 H 1.07994 * 120.99910 * 0.03653 * 4 3 2 28 28 H 1.08004 * 121.01336 * 179.97438 * 5 4 3 29 29 H 1.07996 * 120.03225 * 359.96214 * 8 7 6 30 30 H 1.07996 * 119.85758 * 180.02562 * 9 8 7 31 31 H 1.08003 * 119.82644 * 179.71308 * 10 9 8 32 32 H 1.08002 * 119.97405 * 179.97438 * 11 10 9 33 33 H 0.97009 * 120.00087 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5458 2.1263 -0.0005 5 6 3.8086 3.4836 0.0000 6 6 2.7195 4.3634 0.0006 7 6 2.9470 5.8277 0.0006 8 6 4.2450 6.3346 0.0007 9 6 4.4515 7.6990 0.0002 10 6 3.3738 8.5682 0.0002 11 6 2.0826 8.0782 0.0001 12 6 1.8589 6.7088 0.0006 13 8 0.5914 6.2257 0.0011 14 6 -0.4062 7.1248 0.1182 15 1 -0.1829 8.1815 0.1239 16 6 -1.7188 6.6930 0.2315 17 7 -1.9908 5.4059 0.2242 18 14 -3.1011 7.9388 0.3945 19 1 -3.1156 8.8214 -0.7996 20 1 -4.3999 7.2264 0.4987 21 1 -2.8869 8.7591 1.6138 22 7 1.4834 3.8823 0.0059 23 7 1.2415 2.6219 -0.0001 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 4.3490 1.4043 -0.0016 28 1 4.8232 3.8540 0.0001 29 1 5.0886 5.6603 0.0013 30 1 5.4581 8.0904 -0.0002 31 1 3.5438 9.6347 0.0045 32 1 1.2462 8.7615 0.0005 33 1 -2.9093 5.1037 0.3031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243584002.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:23 Heat of formation + Delta-G solvation = 42.752101 kcal Electronic energy + Delta-G solvation = -19717.941407 eV Core-core repulsion = 16642.756140 eV Total energy + Delta-G solvation = -3075.185268 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.80864 -40.49859 -38.08122 -34.59864 -34.28512 -33.87385 -31.09395 -30.39257 -29.70322 -27.35900 -25.80608 -25.47582 -23.00901 -22.50051 -19.81679 -19.19730 -18.81053 -18.27545 -17.29875 -16.34745 -16.13736 -16.07447 -15.87551 -15.55046 -15.35045 -14.95865 -14.70482 -14.44557 -14.22648 -13.96473 -13.50404 -13.36936 -13.12852 -12.59528 -12.56908 -12.34142 -12.15776 -12.14582 -11.76117 -11.54312 -11.24654 -11.11660 -10.75819 -10.32148 -9.67777 -9.03859 -8.49980 -8.36315 -6.04715 -0.45474 -0.00317 0.40288 0.74082 0.85517 1.18739 1.32901 1.44545 1.48652 2.17973 2.56642 2.95310 3.25712 3.28949 3.52243 3.59335 3.78273 3.86611 4.12915 4.23681 4.27811 4.29431 4.31972 4.57334 4.59244 4.71067 4.90570 4.98985 5.06476 5.14357 5.18425 5.31474 5.65049 5.71079 5.76492 6.03870 6.23410 7.01858 7.86370 7.90939 8.80860 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.012273 B = 0.006571 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.889826 B = 4259.836978 C = 6522.416020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.034 6.034 3 C 0.006 3.994 4 C -0.094 4.094 5 C -0.099 4.099 6 C 0.099 3.901 7 C -0.163 4.163 8 C -0.040 4.040 9 C -0.198 4.198 10 C -0.052 4.052 11 C -0.259 4.259 12 C 0.133 3.867 13 O -0.173 6.173 14 C -0.426 4.426 15 H 0.099 0.901 16 C -0.016 4.016 17 N -0.888 5.888 18 Si 1.012 2.988 19 H -0.258 1.258 20 H -0.274 1.274 21 H -0.259 1.259 22 N -0.239 5.239 23 N -0.280 5.280 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.140 0.860 27 H 0.195 0.805 28 H 0.199 0.801 29 H 0.165 0.835 30 H 0.162 0.838 31 H 0.148 0.852 32 H 0.118 0.882 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.525 -4.705 -0.191 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.200 5.800 3 C -0.251 4.251 4 C -0.127 4.127 5 C -0.128 4.128 6 C -0.047 4.047 7 C -0.166 4.166 8 C -0.059 4.059 9 C -0.217 4.217 10 C -0.070 4.070 11 C -0.279 4.279 12 C 0.077 3.923 13 O -0.075 6.075 14 C -0.502 4.502 15 H 0.116 0.884 16 C -0.216 4.216 17 N -0.522 5.522 18 Si 0.832 3.168 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.183 1.183 22 N -0.080 5.080 23 N -0.125 5.125 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.158 0.842 27 H 0.212 0.788 28 H 0.216 0.784 29 H 0.182 0.818 30 H 0.179 0.821 31 H 0.166 0.834 32 H 0.136 0.864 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.179 -5.820 -0.194 13.499 hybrid contribution -0.815 1.423 0.054 1.641 sum 11.363 -4.397 -0.139 12.185 Atomic orbital electron populations 1.23533 0.93291 1.07636 1.05733 1.84693 1.08356 0.95419 1.91512 1.25436 0.95782 1.01912 1.01927 1.22287 0.95615 0.97196 0.97569 1.22676 1.01336 0.92397 0.96431 1.21792 0.91279 0.95712 0.95931 1.17932 0.93134 0.88190 1.17372 1.21243 0.93281 0.96770 0.94592 1.21133 0.99819 0.92261 1.08462 1.21358 0.90933 1.01053 0.93703 1.21280 0.99330 0.93935 1.13319 1.20126 0.86300 0.93215 0.92627 1.84230 1.10594 1.35256 1.77374 1.21859 0.85737 0.89523 1.53113 0.88386 1.26522 1.00061 0.99083 0.95964 1.70343 1.20400 1.15519 1.45981 0.84760 0.75605 0.76752 0.79726 1.18259 1.19883 1.18326 1.73626 1.20517 1.05033 1.08870 1.73683 1.29983 0.96885 1.11949 0.91006 0.90928 0.84223 0.78766 0.78390 0.81758 0.82070 0.83430 0.86400 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 10.04 113.37 1.14 -2.56 16 2 S -0.03 -0.93 22.57 -56.49 -1.27 -2.20 16 3 C 0.01 0.21 7.08 84.93 0.60 0.81 16 4 C -0.09 -2.65 9.95 22.62 0.23 -2.42 16 5 C -0.10 -2.94 9.54 22.70 0.22 -2.72 16 6 C 0.10 4.29 6.81 42.09 0.29 4.58 16 7 C -0.16 -6.93 5.89 -19.94 -0.12 -7.05 16 8 C -0.04 -1.20 9.43 22.48 0.21 -0.98 16 9 C -0.20 -5.39 10.03 22.26 0.22 -5.17 16 10 C -0.05 -1.67 10.03 22.29 0.22 -1.44 16 11 C -0.26 -11.23 9.16 22.36 0.20 -11.03 16 12 C 0.13 6.74 6.65 22.82 0.15 6.90 16 13 O -0.17 -10.63 7.62 -21.43 -0.16 -10.80 16 14 C -0.43 -25.49 9.49 67.92 0.64 -24.85 16 15 H 0.10 5.36 5.21 -2.91 -0.02 5.35 16 16 C -0.02 -0.92 5.49 84.83 0.47 -0.45 16 17 N -0.89 -56.47 13.67 21.61 0.30 -56.18 16 18 Si 1.01 44.38 29.55 68.60 2.03 46.41 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 21 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 22 N -0.24 -12.67 9.34 -48.35 -0.45 -13.12 16 23 N -0.28 -13.44 10.60 -54.18 -0.57 -14.01 16 24 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.20 3.41 8.06 -2.91 -0.02 3.38 16 28 H 0.20 3.62 6.29 -2.91 -0.02 3.60 16 29 H 0.17 3.24 6.24 -2.91 -0.02 3.22 16 30 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 31 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 32 H 0.12 5.24 5.64 -2.91 -0.02 5.22 16 33 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 Total: -1.00 -83.25 304.54 5.49 -77.76 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 1.15 Total: 18.55 kcal Atomic # 6 Polarization: -50.88 SS G_CDS: 4.48 Total: -46.40 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -0.73 Total: -83.31 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.16 Total: -10.80 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -1.27 Total: -2.20 kcal Total: -83.25 5.49 -77.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243584002.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.512 kcal (2) G-P(sol) polarization free energy of solvation -83.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds