Wall clock time and date at job start Tue Mar 31 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76204 * 102.99977 * 2 1 4 4 C 1.39446 * 120.79262 * 359.72104 * 3 2 1 5 5 N 1.32089 * 119.10134 * 179.76162 * 4 3 2 6 6 C 1.32670 * 120.81850 * 0.52410 * 5 4 3 7 7 C 1.48125 * 119.12862 * 179.70590 * 6 5 4 8 8 C 1.39379 * 120.16461 * 179.74292 * 7 6 5 9 9 C 1.37973 * 119.93261 * 179.76688 * 8 7 6 10 10 C 1.38473 * 120.28598 * 0.50786 * 9 8 7 11 11 C 1.38089 * 120.34393 * 359.74949 * 10 9 8 12 12 C 1.38782 * 120.05424 * 359.97438 * 11 10 9 13 13 O 1.35623 * 120.14303 * 180.02562 * 12 11 10 14 14 C 1.34815 * 116.99897 * 354.39820 * 13 12 11 15 15 H 1.07998 * 120.00315 * 5.06996 * 14 13 12 16 16 C 1.38653 * 119.99786 * 185.06352 * 14 13 12 17 17 N 1.31556 * 120.00210 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00020 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47335 * 89.99905 * 18 16 14 20 20 H 1.48499 * 109.47329 * 210.00535 * 18 16 14 21 21 H 1.48502 * 109.47125 * 329.99992 * 18 16 14 22 22 N 1.32664 * 121.74069 * 359.72350 * 6 5 4 23 23 C 1.32091 * 120.82193 * 0.02562 * 22 6 5 24 24 H 1.08996 * 109.46891 * 299.99879 * 1 2 3 25 25 H 1.08998 * 109.47204 * 59.99709 * 1 2 3 26 26 H 1.08998 * 109.46881 * 180.02562 * 1 2 3 27 27 H 1.08006 * 120.45406 * 359.97438 * 4 3 2 28 28 H 1.07987 * 120.03290 * 0.02562 * 8 7 6 29 29 H 1.08003 * 119.85580 * 180.25623 * 9 8 7 30 30 H 1.08001 * 119.83166 * 179.75977 * 10 9 8 31 31 H 1.08000 * 119.97760 * 180.02562 * 11 10 9 32 32 H 0.97005 * 119.99979 * 180.02562 * 17 16 14 33 33 H 1.08004 * 120.44666 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.2039 2.6819 -0.0058 5 7 1.5388 3.9596 -0.0008 6 6 2.8133 4.3282 -0.0008 7 6 3.1465 5.7715 -0.0018 8 6 4.4782 6.1828 0.0036 9 6 4.7831 7.5284 -0.0022 10 6 3.7713 8.4737 -0.0027 11 6 2.4480 8.0792 -0.0027 12 6 2.1251 6.7295 -0.0027 13 8 0.8260 6.3400 -0.0032 14 6 -0.1036 7.3094 0.1136 15 1 0.1959 8.3469 0.1196 16 6 -1.4443 6.9742 0.2258 17 7 -1.8092 5.7103 0.2189 18 14 -2.7325 8.3173 0.3869 19 1 -3.2017 8.7178 -0.9639 20 1 -3.8810 7.8093 1.1794 21 1 -2.1389 9.4928 1.0733 22 7 3.7972 3.4382 -0.0004 23 6 3.5381 2.1430 -0.0004 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.1644 2.3887 -0.0109 28 1 5.2705 5.4491 0.0081 29 1 5.8155 7.8457 -0.0022 30 1 4.0184 9.5251 -0.0033 31 1 1.6636 8.8216 -0.0035 32 1 -2.7473 5.4758 0.2971 33 1 4.3438 1.4237 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585429.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:39 Heat of formation + Delta-G solvation = 58.745999 kcal Electronic energy + Delta-G solvation = -19724.084088 eV Core-core repulsion = 16649.592367 eV Total energy + Delta-G solvation = -3074.491720 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37489 -38.82540 -36.37107 -33.23192 -32.63982 -32.24807 -29.74774 -28.97548 -28.69113 -25.46527 -24.13153 -23.97390 -21.39801 -20.98107 -17.98642 -17.56992 -17.29747 -16.89945 -16.11749 -14.83303 -14.56563 -14.51879 -14.34901 -14.03791 -13.69217 -13.49882 -13.35536 -13.25299 -12.85623 -12.69390 -12.44389 -11.73839 -11.44414 -11.12834 -10.95544 -10.82235 -10.72552 -10.49096 -10.31583 -10.23927 -10.03394 -9.39842 -8.90290 -8.49268 -8.25862 -7.48460 -6.97231 -6.51430 -4.05226 0.92564 1.58153 1.64699 2.28773 2.39429 2.43026 3.08465 3.09444 3.13352 3.89850 4.19981 4.44536 4.70732 4.72035 4.87846 5.06451 5.06937 5.09356 5.21578 5.35358 5.58062 5.65640 5.73506 5.82020 5.97960 6.08905 6.33184 6.60045 6.74398 6.83750 7.02062 7.19160 7.30861 7.32476 7.53746 7.77373 7.90244 8.74009 8.91575 9.65329 10.62929 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.006439 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.961584 B = 4347.645520 C = 6568.279947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.110 6.110 3 C -0.238 4.238 4 C 0.157 3.843 5 N -0.444 5.444 6 C 0.372 3.628 7 C -0.144 4.144 8 C -0.019 4.019 9 C -0.231 4.231 10 C -0.052 4.052 11 C -0.241 4.241 12 C 0.180 3.820 13 O -0.118 6.118 14 C -0.396 4.396 15 H 0.092 0.908 16 C 0.046 3.954 17 N -0.836 5.836 18 Si 0.938 3.062 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.267 1.267 22 N -0.516 5.516 23 C 0.171 3.829 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.162 0.838 28 H 0.126 0.874 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.131 0.869 32 H 0.268 0.732 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 -6.224 -0.230 7.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.127 5.873 3 C -0.355 4.355 4 C -0.017 4.017 5 N -0.157 5.157 6 C 0.111 3.889 7 C -0.148 4.148 8 C -0.039 4.039 9 C -0.250 4.250 10 C -0.071 4.071 11 C -0.261 4.261 12 C 0.120 3.880 13 O -0.015 6.015 14 C -0.472 4.472 15 H 0.110 0.890 16 C -0.161 4.161 17 N -0.468 5.468 18 Si 0.763 3.237 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.191 1.191 22 N -0.230 5.230 23 C -0.003 4.003 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.125 0.875 27 H 0.179 0.821 28 H 0.143 0.857 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.149 0.851 32 H 0.078 0.922 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.477 -6.634 -0.224 8.606 hybrid contribution -1.785 0.885 0.081 1.994 sum 3.692 -5.749 -0.143 6.834 Atomic orbital electron populations 1.23662 0.94445 1.06933 1.06303 1.84999 1.06854 1.02092 1.93325 1.23485 0.99839 0.98862 1.13270 1.23384 0.98982 0.87845 0.91481 1.68886 1.19204 1.16881 1.10691 1.21382 0.83978 0.93742 0.89820 1.17099 0.92246 0.86343 1.19157 1.20810 0.94007 0.95652 0.93448 1.20533 0.98289 0.92724 1.13447 1.20909 0.92523 0.98465 0.95172 1.21109 0.96897 0.95547 1.12510 1.19311 0.85866 0.91405 0.91372 1.84240 1.09299 1.34412 1.73586 1.21520 0.86031 0.87991 1.51641 0.89034 1.25288 0.97087 0.97480 0.96291 1.70106 1.17298 1.16084 1.43342 0.85759 0.79566 0.79705 0.78710 1.19845 1.20245 1.19111 1.68341 1.37149 1.01721 1.15825 1.22658 0.93289 0.92337 0.92025 0.89457 0.89477 0.87465 0.82123 0.85651 0.87141 0.87217 0.85148 0.92172 0.81944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.18 101.05 0.93 -0.61 16 2 S -0.11 -1.42 22.60 -107.50 -2.43 -3.85 16 3 C -0.24 -3.97 6.16 -38.68 -0.24 -4.20 16 4 C 0.16 3.09 10.63 -16.99 -0.18 2.91 16 5 N -0.44 -10.52 8.15 -11.00 -0.09 -10.61 16 6 C 0.37 8.40 7.55 -156.90 -1.18 7.22 16 7 C -0.14 -3.28 5.89 -104.74 -0.62 -3.89 16 8 C -0.02 -0.37 9.56 -39.25 -0.38 -0.75 16 9 C -0.23 -4.05 10.03 -39.59 -0.40 -4.45 16 10 C -0.05 -0.94 10.03 -39.55 -0.40 -1.33 16 11 C -0.24 -5.19 9.16 -39.43 -0.36 -5.55 16 12 C 0.18 4.41 6.65 -38.71 -0.26 4.16 16 13 O -0.12 -3.27 7.55 0.48 0.00 -3.26 16 14 C -0.40 -10.67 9.49 30.89 0.29 -10.37 16 15 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 16 C 0.05 1.20 5.49 -17.52 -0.10 1.10 16 17 N -0.84 -23.11 13.67 55.48 0.76 -22.35 16 18 Si 0.94 19.76 29.55 -169.99 -5.02 14.74 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 N -0.52 -10.14 9.43 -11.00 -0.10 -10.25 16 23 C 0.17 2.86 11.09 -16.99 -0.19 2.67 16 24 H 0.09 0.95 7.80 -51.93 -0.41 0.55 16 25 H 0.09 0.94 7.78 -51.93 -0.40 0.54 16 26 H 0.11 0.87 8.14 -51.92 -0.42 0.45 16 27 H 0.16 2.91 6.06 -52.48 -0.32 2.59 16 28 H 0.13 2.20 7.50 -52.49 -0.39 1.81 16 29 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 30 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 32 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.16 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 303.80 15.07 4.58 4.58 Total: -1.00 -30.48 303.80 -8.29 -38.78 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -2.92 Total: 5.32 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -3.07 Total: -13.10 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.57 Total: -43.20 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: 0.00 Total: -3.26 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.43 Total: -3.85 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.48 -8.29 -38.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585429.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.524 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds