Wall clock time and date at job start Tue Mar 31 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76204 * 102.99977 * 2 1 4 4 C 1.39446 * 120.79262 * 359.72104 * 3 2 1 5 5 N 1.32089 * 119.10134 * 179.76162 * 4 3 2 6 6 C 1.32670 * 120.81850 * 0.52410 * 5 4 3 7 7 C 1.48125 * 119.12862 * 179.70590 * 6 5 4 8 8 C 1.39379 * 120.16461 * 179.74292 * 7 6 5 9 9 C 1.37973 * 119.93261 * 179.76688 * 8 7 6 10 10 C 1.38473 * 120.28598 * 0.50786 * 9 8 7 11 11 C 1.38089 * 120.34393 * 359.74949 * 10 9 8 12 12 C 1.38782 * 120.05424 * 359.97438 * 11 10 9 13 13 O 1.35623 * 120.14303 * 180.02562 * 12 11 10 14 14 C 1.34815 * 116.99897 * 354.39820 * 13 12 11 15 15 H 1.07998 * 120.00315 * 5.06996 * 14 13 12 16 16 C 1.38653 * 119.99786 * 185.06352 * 14 13 12 17 17 N 1.31556 * 120.00210 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00020 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47335 * 89.99905 * 18 16 14 20 20 H 1.48499 * 109.47329 * 210.00535 * 18 16 14 21 21 H 1.48502 * 109.47125 * 329.99992 * 18 16 14 22 22 N 1.32664 * 121.74069 * 359.72350 * 6 5 4 23 23 C 1.32091 * 120.82193 * 0.02562 * 22 6 5 24 24 H 1.08996 * 109.46891 * 299.99879 * 1 2 3 25 25 H 1.08998 * 109.47204 * 59.99709 * 1 2 3 26 26 H 1.08998 * 109.46881 * 180.02562 * 1 2 3 27 27 H 1.08006 * 120.45406 * 359.97438 * 4 3 2 28 28 H 1.07987 * 120.03290 * 0.02562 * 8 7 6 29 29 H 1.08003 * 119.85580 * 180.25623 * 9 8 7 30 30 H 1.08001 * 119.83166 * 179.75977 * 10 9 8 31 31 H 1.08000 * 119.97760 * 180.02562 * 11 10 9 32 32 H 0.97005 * 119.99979 * 180.02562 * 17 16 14 33 33 H 1.08004 * 120.44666 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.2039 2.6819 -0.0058 5 7 1.5388 3.9596 -0.0008 6 6 2.8133 4.3282 -0.0008 7 6 3.1465 5.7715 -0.0018 8 6 4.4782 6.1828 0.0036 9 6 4.7831 7.5284 -0.0022 10 6 3.7713 8.4737 -0.0027 11 6 2.4480 8.0792 -0.0027 12 6 2.1251 6.7295 -0.0027 13 8 0.8260 6.3400 -0.0032 14 6 -0.1036 7.3094 0.1136 15 1 0.1959 8.3469 0.1196 16 6 -1.4443 6.9742 0.2258 17 7 -1.8092 5.7103 0.2189 18 14 -2.7325 8.3173 0.3869 19 1 -3.2017 8.7178 -0.9639 20 1 -3.8810 7.8093 1.1794 21 1 -2.1389 9.4928 1.0733 22 7 3.7972 3.4382 -0.0004 23 6 3.5381 2.1430 -0.0004 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.1644 2.3887 -0.0109 28 1 5.2705 5.4491 0.0081 29 1 5.8155 7.8457 -0.0022 30 1 4.0184 9.5251 -0.0033 31 1 1.6636 8.8216 -0.0035 32 1 -2.7473 5.4758 0.2971 33 1 4.3438 1.4237 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585429.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:39 Heat of formation + Delta-G solvation = 40.888074 kcal Electronic energy + Delta-G solvation = -19724.858465 eV Core-core repulsion = 16649.592367 eV Total energy + Delta-G solvation = -3075.266098 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.90161 -40.49095 -38.04004 -34.75972 -34.31983 -33.93379 -31.22029 -30.42769 -29.86785 -27.32989 -25.65628 -25.45854 -23.04246 -22.53618 -19.75874 -19.19144 -18.63108 -18.36237 -17.69195 -16.39998 -16.11872 -16.02990 -15.97777 -15.35711 -15.26888 -15.03208 -14.62650 -14.50424 -14.31103 -14.18211 -13.69249 -13.50130 -13.07813 -12.56444 -12.49784 -12.37919 -12.16593 -12.09510 -11.88609 -11.63998 -11.35465 -11.14420 -10.75900 -10.02088 -9.75097 -9.03377 -8.39690 -8.30182 -6.03879 -0.58931 0.18231 0.44499 0.71596 0.80659 1.31891 1.36173 1.45029 1.51746 2.18531 2.65282 2.94812 2.98517 3.25409 3.30610 3.49747 3.52122 3.92940 4.11734 4.20039 4.22677 4.26758 4.33162 4.54481 4.61232 4.78216 4.84548 5.02684 5.16023 5.22004 5.31731 5.64928 5.66921 5.74901 6.02631 6.05964 6.23157 7.01680 7.20980 7.85998 8.79303 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.006439 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.961584 B = 4347.645520 C = 6568.279947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.070 6.070 3 C -0.224 4.224 4 C 0.132 3.868 5 N -0.490 5.490 6 C 0.343 3.657 7 C -0.161 4.161 8 C -0.025 4.025 9 C -0.206 4.206 10 C -0.043 4.043 11 C -0.259 4.259 12 C 0.146 3.854 13 O -0.164 6.164 14 C -0.424 4.424 15 H 0.099 0.901 16 C -0.011 4.011 17 N -0.889 5.889 18 Si 1.011 2.989 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.256 1.256 22 N -0.512 5.512 23 C 0.166 3.834 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.140 0.860 27 H 0.164 0.836 28 H 0.145 0.855 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.126 0.874 32 H 0.269 0.731 33 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.249 -6.560 -0.176 9.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.168 5.832 3 C -0.341 4.341 4 C -0.041 4.041 5 N -0.203 5.203 6 C 0.080 3.920 7 C -0.165 4.165 8 C -0.045 4.045 9 C -0.224 4.224 10 C -0.062 4.062 11 C -0.278 4.278 12 C 0.090 3.910 13 O -0.065 6.065 14 C -0.500 4.500 15 H 0.116 0.884 16 C -0.212 4.212 17 N -0.524 5.524 18 Si 0.831 3.169 19 H -0.191 1.191 20 H -0.198 1.198 21 H -0.180 1.180 22 N -0.227 5.227 23 C -0.008 4.008 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.158 0.842 27 H 0.181 0.819 28 H 0.163 0.837 29 H 0.175 0.825 30 H 0.171 0.829 31 H 0.143 0.857 32 H 0.078 0.922 33 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 7.764 -6.991 -0.174 10.449 hybrid contribution -2.142 0.753 0.050 2.271 sum 5.622 -6.239 -0.124 8.399 Atomic orbital electron populations 1.23835 0.92866 1.08965 1.06085 1.84890 1.08505 0.97567 1.92197 1.23831 0.99306 1.01195 1.09749 1.23547 1.00062 0.87658 0.92863 1.68783 1.20461 1.19164 1.11938 1.21462 0.84283 0.94378 0.91902 1.17619 0.93364 0.86746 1.18798 1.21139 0.92906 0.97253 0.93209 1.21114 1.00397 0.91599 1.09291 1.21377 0.90898 1.00956 0.92972 1.21277 0.98724 0.94340 1.13464 1.19930 0.85694 0.93260 0.92163 1.84246 1.10397 1.34904 1.76978 1.21943 0.86857 0.88535 1.52710 0.88409 1.26422 0.98912 0.99989 0.95829 1.70255 1.17553 1.18264 1.46324 0.84695 0.76470 0.76803 0.78910 1.19110 1.19777 1.17953 1.68335 1.36191 1.02714 1.15440 1.23422 0.94505 0.92028 0.90836 0.89809 0.89720 0.84162 0.81874 0.83729 0.82500 0.82935 0.85659 0.92237 0.77680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.18 113.37 1.04 -1.88 16 2 S -0.07 -1.66 22.60 -56.49 -1.28 -2.93 16 3 C -0.22 -7.33 6.16 22.85 0.14 -7.19 16 4 C 0.13 5.40 10.63 84.95 0.90 6.31 16 5 N -0.49 -24.63 8.15 -188.71 -1.54 -26.17 16 6 C 0.34 16.02 7.55 137.44 1.04 17.05 16 7 C -0.16 -7.52 5.89 -19.94 -0.12 -7.63 16 8 C -0.03 -0.94 9.56 22.48 0.21 -0.72 16 9 C -0.21 -6.46 10.03 22.26 0.22 -6.24 16 10 C -0.04 -1.46 10.03 22.29 0.22 -1.24 16 11 C -0.26 -11.28 9.16 22.36 0.20 -11.08 16 12 C 0.15 7.49 6.65 22.84 0.15 7.64 16 13 O -0.16 -9.76 7.55 -21.19 -0.16 -9.92 16 14 C -0.42 -24.38 9.49 67.92 0.64 -23.74 16 15 H 0.10 5.18 5.21 -2.91 -0.02 5.16 16 16 C -0.01 -0.61 5.49 84.83 0.47 -0.14 16 17 N -0.89 -52.49 13.67 21.61 0.30 -52.19 16 18 Si 1.01 42.28 29.55 68.60 2.03 44.31 16 19 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 N -0.51 -19.94 9.43 -188.71 -1.78 -21.73 16 23 C 0.17 5.30 11.09 84.94 0.94 6.24 16 24 H 0.08 1.76 7.80 -2.39 -0.02 1.74 16 25 H 0.08 1.76 7.78 -2.39 -0.02 1.74 16 26 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.16 6.30 6.06 -2.91 -0.02 6.28 16 28 H 0.15 4.73 7.50 -2.92 -0.02 4.71 16 29 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 31 H 0.13 5.45 5.64 -2.91 -0.02 5.44 16 32 H 0.27 14.58 8.31 -92.70 -0.77 13.80 16 33 H 0.21 4.67 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -72.95 303.80 4.80 -68.15 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 1.15 Total: 23.10 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 6.08 Total: -22.62 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -3.02 Total: -100.09 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.16 Total: -9.92 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -1.28 Total: -2.93 kcal Total: -72.95 4.80 -68.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585429.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.042 kcal (2) G-P(sol) polarization free energy of solvation -72.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds