Wall clock time and date at job start Tue Mar 31 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76208 * 102.99964 * 2 1 4 4 C 1.39439 * 120.03595 * 185.03949 * 3 2 1 5 5 N 1.31981 * 120.12206 * 179.97438 * 4 3 2 6 6 C 1.32112 * 120.19906 * 359.73574 * 5 4 3 7 7 C 1.39362 * 120.06504 * 0.52348 * 6 5 4 8 8 C 1.48192 * 120.05961 * 179.75660 * 7 6 5 9 9 C 1.39350 * 120.16537 * 130.65960 * 8 7 6 10 10 C 1.37978 * 119.93763 * 180.02562 * 9 8 7 11 11 C 1.38460 * 120.28502 * 0.02562 * 10 9 8 12 12 C 1.38097 * 120.33684 * 359.97438 * 11 10 9 13 13 C 1.38772 * 120.04780 * 0.02562 * 12 11 10 14 14 O 1.35640 * 120.14080 * 180.02562 * 13 12 11 15 15 C 1.34818 * 116.99467 * 354.17606 * 14 13 12 16 16 H 1.08000 * 120.00090 * 5.07059 * 15 14 13 17 17 C 1.38660 * 119.99588 * 185.06610 * 15 14 13 18 18 N 1.31550 * 119.99622 * 184.97288 * 17 15 14 19 19 Si 1.86802 * 120.00181 * 4.97417 * 17 15 14 20 20 H 1.48504 * 109.47026 * 94.95576 * 19 17 15 21 21 H 1.48501 * 109.46898 * 214.95304 * 19 17 15 22 22 H 1.48499 * 109.47145 * 334.95569 * 19 17 15 23 23 N 1.32621 * 120.02791 * 5.02228 * 3 2 1 24 24 H 1.09000 * 109.47346 * 64.97700 * 1 2 3 25 25 H 1.09000 * 109.46688 * 184.97670 * 1 2 3 26 26 H 1.09000 * 109.47041 * 304.97369 * 1 2 3 27 27 H 1.07992 * 119.93711 * 359.96154 * 4 3 2 28 28 H 1.08007 * 119.96817 * 180.25285 * 6 5 4 29 29 H 1.08001 * 120.03083 * 0.04377 * 9 8 7 30 30 H 1.08006 * 119.85947 * 180.02562 * 10 9 8 31 31 H 1.07998 * 119.83631 * 179.70303 * 11 10 9 32 32 H 1.07997 * 119.97584 * 179.97438 * 12 11 10 33 33 H 0.97009 * 119.99960 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5390 2.1265 -0.1060 5 7 3.8378 3.4120 -0.1067 6 6 2.8799 4.3170 -0.0123 7 6 1.5497 3.9165 0.0995 8 6 0.4758 4.9316 0.2109 9 6 -0.6489 4.8538 -0.6081 10 6 -1.6458 5.8018 -0.5008 11 6 -1.5338 6.8319 0.4176 12 6 -0.4242 6.9201 1.2350 13 6 0.5866 5.9742 1.1388 14 8 1.6771 6.0588 1.9410 15 6 1.7764 7.1507 2.7256 16 1 0.9696 7.8679 2.7575 17 6 2.9145 7.3527 3.4914 18 7 2.9718 8.3647 4.3300 19 14 4.3663 6.1881 3.3324 20 1 5.3461 6.7473 2.3667 21 1 5.0162 6.0234 4.6575 22 1 3.8909 4.8678 2.8467 23 7 1.2451 2.6209 0.1005 24 1 -0.3634 0.4347 -0.9312 25 1 -0.3633 -1.0238 0.0892 26 1 -0.3633 0.5891 0.8421 27 1 4.3250 1.3904 -0.1875 28 1 3.1282 5.3681 -0.0173 29 1 -0.7404 4.0521 -1.3260 30 1 -2.5172 5.7400 -1.1359 31 1 -2.3162 7.5727 0.4921 32 1 -0.3427 7.7263 1.9490 33 1 3.7682 8.5064 4.8656 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585848.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:33 Heat of formation + Delta-G solvation = 45.179509 kcal Electronic energy + Delta-G solvation = -19875.511778 eV Core-core repulsion = 16800.431770 eV Total energy + Delta-G solvation = -3075.080008 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.71539 -39.20375 -36.72996 -34.14390 -32.68983 -32.27338 -29.66123 -29.05795 -28.90434 -25.48755 -24.61483 -24.22447 -21.60074 -21.21472 -18.17997 -17.97185 -17.35390 -16.99539 -16.55390 -15.44420 -15.09335 -14.64821 -14.41314 -14.05110 -13.99129 -13.83645 -13.45899 -13.24372 -12.97193 -12.55309 -12.51161 -12.33562 -11.61567 -11.39673 -11.18224 -11.14564 -10.95655 -10.89317 -10.65904 -10.29676 -9.79086 -9.60261 -9.01209 -8.96912 -8.30457 -7.68334 -7.44915 -6.56836 -4.23530 0.81400 1.23135 1.37806 1.95826 2.10540 2.17684 3.15102 3.21008 3.36328 3.83761 4.12825 4.24038 4.40875 4.54123 4.60775 4.74684 4.94768 5.05215 5.13505 5.32003 5.40949 5.53195 5.55751 5.64401 5.73187 5.86259 6.05448 6.34135 6.45777 6.55912 6.87516 6.98397 7.10438 7.36545 7.44651 7.61527 7.86026 7.94460 8.77356 9.34835 10.49550 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.006805 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.095123 B = 4113.836223 C = 5636.894164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.076 6.076 3 C 0.065 3.935 4 C 0.057 3.943 5 N -0.422 5.422 6 C 0.070 3.930 7 C 0.175 3.825 8 C -0.137 4.137 9 C -0.036 4.036 10 C -0.209 4.209 11 C -0.059 4.059 12 C -0.219 4.219 13 C 0.180 3.820 14 O -0.205 6.205 15 C -0.393 4.393 16 H 0.110 0.890 17 C 0.071 3.929 18 N -0.869 5.869 19 Si 0.895 3.105 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.257 1.257 23 N -0.444 5.444 24 H 0.084 0.916 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.168 0.832 28 H 0.173 0.827 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.139 0.861 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.478 -11.455 -9.210 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.160 5.840 3 C -0.186 4.186 4 C -0.110 4.110 5 N -0.136 5.136 6 C -0.092 4.092 7 C 0.033 3.967 8 C -0.141 4.141 9 C -0.055 4.055 10 C -0.228 4.228 11 C -0.078 4.078 12 C -0.238 4.238 13 C 0.126 3.874 14 O -0.108 6.108 15 C -0.468 4.468 16 H 0.128 0.872 17 C -0.134 4.134 18 N -0.505 5.505 19 Si 0.720 3.280 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.180 1.180 23 N -0.163 5.163 24 H 0.103 0.897 25 H 0.120 0.880 26 H 0.110 0.890 27 H 0.185 0.815 28 H 0.190 0.810 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.157 0.843 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.456 -12.510 -8.975 15.780 hybrid contribution -0.261 0.883 0.263 0.957 sum -3.717 -11.628 -8.712 14.997 Atomic orbital electron populations 1.23449 0.93483 1.06000 1.06944 1.85296 1.08160 0.98596 1.91928 1.24040 0.93847 0.99220 1.01541 1.23283 0.94373 0.93756 0.99543 1.68402 1.35709 1.01179 1.08277 1.23786 0.88922 1.00682 0.95839 1.20559 0.93504 0.89713 0.92907 1.17299 0.96869 0.96761 1.03132 1.20650 0.91280 0.97082 0.96486 1.20609 1.00310 0.98311 1.03601 1.20953 0.96365 0.96618 0.93828 1.21221 0.95342 1.02564 1.04691 1.18964 0.87757 0.92308 0.88420 1.83591 1.37471 1.42399 1.47330 1.20786 1.05983 0.99188 1.20827 0.87246 1.24446 0.98017 0.96567 0.94396 1.69636 1.29960 1.28334 1.22582 0.86321 0.81555 0.82018 0.78140 1.19356 1.20567 1.18044 1.68870 1.33893 1.01327 1.12195 0.89680 0.87972 0.88965 0.81507 0.81011 0.86682 0.86917 0.86753 0.84332 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 10.06 101.05 1.02 -0.34 16 2 S -0.08 -0.95 22.57 -107.50 -2.43 -3.37 16 3 C 0.07 1.06 7.00 -16.76 -0.12 0.94 16 4 C 0.06 0.92 10.98 -17.04 -0.19 0.73 16 5 N -0.42 -7.94 10.48 -12.58 -0.13 -8.07 16 6 C 0.07 1.39 9.94 -17.01 -0.17 1.22 16 7 C 0.18 3.42 6.11 -82.81 -0.51 2.92 16 8 C -0.14 -2.70 5.63 -104.73 -0.59 -3.29 16 9 C -0.04 -0.61 9.71 -39.26 -0.38 -0.99 16 10 C -0.21 -3.27 10.03 -39.59 -0.40 -3.67 16 11 C -0.06 -0.98 10.03 -39.55 -0.40 -1.38 16 12 C -0.22 -4.39 9.16 -39.44 -0.36 -4.75 16 13 C 0.18 3.94 6.55 -38.72 -0.25 3.68 16 14 O -0.20 -5.07 6.89 0.42 0.00 -5.07 16 15 C -0.39 -10.46 9.94 30.89 0.31 -10.16 16 16 H 0.11 2.95 5.44 -52.49 -0.29 2.67 16 17 C 0.07 1.92 5.49 -17.52 -0.10 1.82 16 18 N -0.87 -24.24 13.96 55.48 0.77 -23.47 16 19 Si 0.89 21.44 28.62 -169.99 -4.87 16.58 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.26 -6.36 7.11 56.52 0.40 -5.95 16 23 N -0.44 -8.03 9.45 -8.47 -0.08 -8.11 16 24 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 25 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 26 H 0.09 1.09 8.09 -51.92 -0.42 0.67 16 27 H 0.17 2.13 8.06 -52.49 -0.42 1.71 16 28 H 0.17 3.41 7.62 -52.48 -0.40 3.01 16 29 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 32 H 0.14 2.88 5.64 -52.49 -0.30 2.58 16 33 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 307.53 15.07 4.63 4.63 Total: -1.00 -28.95 307.53 -7.30 -36.25 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -3.07 Total: 3.88 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -2.13 Total: -13.25 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.56 Total: -39.65 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: 0.00 Total: -5.07 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.87 Total: 16.58 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -2.43 Total: -3.37 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.95 -7.30 -36.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585848.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.428 kcal (2) G-P(sol) polarization free energy of solvation -28.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds