Wall clock time and date at job start Tue Mar 31 2020 05:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76208 * 102.99964 * 2 1 4 4 C 1.39439 * 120.03595 * 185.03949 * 3 2 1 5 5 N 1.31981 * 120.12206 * 179.97438 * 4 3 2 6 6 C 1.32112 * 120.19906 * 359.73574 * 5 4 3 7 7 C 1.39362 * 120.06504 * 0.52348 * 6 5 4 8 8 C 1.48192 * 120.05961 * 179.75660 * 7 6 5 9 9 C 1.39350 * 120.16537 * 130.65960 * 8 7 6 10 10 C 1.37978 * 119.93763 * 180.02562 * 9 8 7 11 11 C 1.38460 * 120.28502 * 0.02562 * 10 9 8 12 12 C 1.38097 * 120.33684 * 359.97438 * 11 10 9 13 13 C 1.38772 * 120.04780 * 0.02562 * 12 11 10 14 14 O 1.35640 * 120.14080 * 180.02562 * 13 12 11 15 15 C 1.34818 * 116.99467 * 354.17606 * 14 13 12 16 16 H 1.08000 * 120.00090 * 5.07059 * 15 14 13 17 17 C 1.38660 * 119.99588 * 185.06610 * 15 14 13 18 18 N 1.31550 * 119.99622 * 184.97288 * 17 15 14 19 19 Si 1.86802 * 120.00181 * 4.97417 * 17 15 14 20 20 H 1.48504 * 109.47026 * 94.95576 * 19 17 15 21 21 H 1.48501 * 109.46898 * 214.95304 * 19 17 15 22 22 H 1.48499 * 109.47145 * 334.95569 * 19 17 15 23 23 N 1.32621 * 120.02791 * 5.02228 * 3 2 1 24 24 H 1.09000 * 109.47346 * 64.97700 * 1 2 3 25 25 H 1.09000 * 109.46688 * 184.97670 * 1 2 3 26 26 H 1.09000 * 109.47041 * 304.97369 * 1 2 3 27 27 H 1.07992 * 119.93711 * 359.96154 * 4 3 2 28 28 H 1.08007 * 119.96817 * 180.25285 * 6 5 4 29 29 H 1.08001 * 120.03083 * 0.04377 * 9 8 7 30 30 H 1.08006 * 119.85947 * 180.02562 * 10 9 8 31 31 H 1.07998 * 119.83631 * 179.70303 * 11 10 9 32 32 H 1.07997 * 119.97584 * 179.97438 * 12 11 10 33 33 H 0.97009 * 119.99960 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5390 2.1265 -0.1060 5 7 3.8378 3.4120 -0.1067 6 6 2.8799 4.3170 -0.0123 7 6 1.5497 3.9165 0.0995 8 6 0.4758 4.9316 0.2109 9 6 -0.6489 4.8538 -0.6081 10 6 -1.6458 5.8018 -0.5008 11 6 -1.5338 6.8319 0.4176 12 6 -0.4242 6.9201 1.2350 13 6 0.5866 5.9742 1.1388 14 8 1.6771 6.0588 1.9410 15 6 1.7764 7.1507 2.7256 16 1 0.9696 7.8679 2.7575 17 6 2.9145 7.3527 3.4914 18 7 2.9718 8.3647 4.3300 19 14 4.3663 6.1881 3.3324 20 1 5.3461 6.7473 2.3667 21 1 5.0162 6.0234 4.6575 22 1 3.8909 4.8678 2.8467 23 7 1.2451 2.6209 0.1005 24 1 -0.3634 0.4347 -0.9312 25 1 -0.3633 -1.0238 0.0892 26 1 -0.3633 0.5891 0.8421 27 1 4.3250 1.3904 -0.1875 28 1 3.1282 5.3681 -0.0173 29 1 -0.7404 4.0521 -1.3260 30 1 -2.5172 5.7400 -1.1359 31 1 -2.3162 7.5727 0.4921 32 1 -0.3427 7.7263 1.9490 33 1 3.7682 8.5064 4.8656 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585848.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:32 Heat of formation + Delta-G solvation = 27.660820 kcal Electronic energy + Delta-G solvation = -19876.271445 eV Core-core repulsion = 16800.431770 eV Total energy + Delta-G solvation = -3075.839675 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.10091 -40.78838 -38.31770 -35.51826 -34.55942 -33.76379 -31.11649 -30.47995 -29.80526 -27.35454 -26.00088 -25.60521 -23.16547 -22.68120 -19.92467 -19.51545 -18.73544 -18.43164 -17.88664 -16.88475 -16.66539 -16.13775 -15.81185 -15.61494 -15.45835 -15.34166 -14.67847 -14.40964 -14.30720 -14.21620 -13.99700 -13.62518 -13.23139 -12.78490 -12.69754 -12.65808 -12.51630 -12.43514 -12.11326 -11.69912 -11.41488 -11.11916 -10.95401 -10.35643 -9.71771 -9.14817 -8.64083 -8.57182 -6.27019 -0.56209 -0.14844 0.26690 0.53672 0.62894 1.19234 1.23510 1.26861 1.43464 2.18569 2.44545 2.71053 2.92157 2.97348 3.06242 3.24096 3.44400 3.91179 4.05949 4.13985 4.20693 4.30266 4.31812 4.35021 4.51282 4.58097 4.83967 4.92492 5.04020 5.15964 5.33293 5.52669 5.62972 5.71076 5.83443 6.00881 6.15058 6.56940 6.78369 7.50290 8.53866 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.006805 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.095123 B = 4113.836223 C = 5636.894164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.037 6.037 3 C 0.056 3.944 4 C 0.059 3.941 5 N -0.440 5.440 6 C 0.046 3.954 7 C 0.156 3.844 8 C -0.137 4.137 9 C -0.038 4.038 10 C -0.180 4.180 11 C -0.055 4.055 12 C -0.236 4.236 13 C 0.147 3.853 14 O -0.233 6.233 15 C -0.393 4.393 16 H 0.092 0.908 17 C 0.025 3.975 18 N -0.913 5.913 19 Si 0.950 3.050 20 H -0.262 1.262 21 H -0.271 1.271 22 H -0.273 1.273 23 N -0.448 5.448 24 H 0.089 0.911 25 H 0.135 0.865 26 H 0.078 0.922 27 H 0.203 0.797 28 H 0.156 0.844 29 H 0.141 0.859 30 H 0.159 0.841 31 H 0.150 0.850 32 H 0.120 0.880 33 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.228 -14.400 -11.355 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.200 5.800 3 C -0.197 4.197 4 C -0.109 4.109 5 N -0.153 5.153 6 C -0.115 4.115 7 C 0.016 3.984 8 C -0.140 4.140 9 C -0.056 4.056 10 C -0.199 4.199 11 C -0.073 4.073 12 C -0.255 4.255 13 C 0.096 3.904 14 O -0.139 6.139 15 C -0.470 4.470 16 H 0.109 0.891 17 C -0.175 4.175 18 N -0.553 5.553 19 Si 0.774 3.226 20 H -0.187 1.187 21 H -0.196 1.196 22 H -0.197 1.197 23 N -0.168 5.168 24 H 0.108 0.892 25 H 0.154 0.846 26 H 0.097 0.903 27 H 0.220 0.780 28 H 0.173 0.827 29 H 0.158 0.842 30 H 0.177 0.823 31 H 0.168 0.832 32 H 0.137 0.863 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.247 -15.439 -11.155 19.756 hybrid contribution -0.003 1.502 0.658 1.640 sum -5.251 -13.936 -10.497 18.220 Atomic orbital electron populations 1.23610 0.91879 1.07934 1.06615 1.85234 1.09805 0.94275 1.90725 1.24745 0.93898 1.01273 0.99780 1.23930 0.95645 0.93407 0.97887 1.68355 1.35850 1.02321 1.08802 1.23583 0.89587 1.00390 0.97910 1.20540 0.93283 0.90570 0.94038 1.17599 0.97813 0.95985 1.02571 1.21038 0.90439 0.98110 0.96057 1.21171 1.00660 0.95995 1.02039 1.21355 0.95676 0.97630 0.92617 1.21301 0.96603 1.02036 1.05566 1.19464 0.87679 0.93919 0.89381 1.83566 1.39342 1.41937 1.49039 1.20723 1.05502 0.99665 1.21070 0.89067 1.25014 0.99981 0.97904 0.94595 1.69699 1.30914 1.30234 1.24472 0.85504 0.79303 0.79560 0.78258 1.18723 1.19612 1.19748 1.68907 1.34459 1.00785 1.12615 0.89170 0.84640 0.90303 0.78020 0.82668 0.84158 0.82302 0.83189 0.86256 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 10.06 113.37 1.14 -1.12 16 2 S -0.04 -0.79 22.57 -56.49 -1.27 -2.07 16 3 C 0.06 1.69 7.00 84.86 0.59 2.28 16 4 C 0.06 1.81 10.98 84.96 0.93 2.74 16 5 N -0.44 -16.54 10.48 -193.70 -2.03 -18.57 16 6 C 0.05 1.88 9.94 84.92 0.84 2.73 16 7 C 0.16 6.11 6.11 41.87 0.26 6.37 16 8 C -0.14 -5.34 5.63 -19.93 -0.11 -5.45 16 9 C -0.04 -1.16 9.71 22.48 0.22 -0.95 16 10 C -0.18 -4.85 10.03 22.26 0.22 -4.62 16 11 C -0.05 -1.67 10.03 22.29 0.22 -1.45 16 12 C -0.24 -9.61 9.16 22.36 0.20 -9.40 16 13 C 0.15 6.62 6.55 22.83 0.15 6.77 16 14 O -0.23 -12.19 6.89 -21.41 -0.15 -12.33 16 15 C -0.39 -22.31 9.94 67.92 0.68 -21.64 16 16 H 0.09 5.32 5.44 -2.91 -0.02 5.31 16 17 C 0.03 1.42 5.49 84.84 0.47 1.89 16 18 N -0.91 -53.56 13.96 21.61 0.30 -53.26 16 19 Si 0.95 46.48 28.62 68.60 1.96 48.44 16 20 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.27 -13.89 7.11 99.48 0.71 -13.19 16 23 N -0.45 -15.60 9.45 -180.70 -1.71 -17.30 16 24 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.08 1.64 8.09 -2.39 -0.02 1.62 16 27 H 0.20 4.57 8.06 -2.91 -0.02 4.55 16 28 H 0.16 6.63 7.62 -2.91 -0.02 6.61 16 29 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 30 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 31 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 32 H 0.12 5.28 5.64 -2.91 -0.02 5.26 16 33 H 0.28 15.46 8.31 -92.70 -0.77 14.69 16 Total: -1.00 -66.76 307.53 4.07 -62.69 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 1.14 Total: 14.24 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 5.82 Total: -21.85 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -3.44 Total: -89.13 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.15 Total: -12.33 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.96 Total: 48.44 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -1.27 Total: -2.07 kcal Total: -66.76 4.07 -62.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585848.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.354 kcal (2) G-P(sol) polarization free energy of solvation -66.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds