Wall clock time and date at job start Tue Mar 31 2020 05:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76201 * 102.99991 * 2 1 4 4 C 1.39457 * 119.98734 * 179.97438 * 3 2 1 5 5 N 1.31782 * 120.02557 * 179.72226 * 4 3 2 6 6 C 1.33142 * 119.99173 * 0.56215 * 5 4 3 7 7 C 1.48165 * 120.01875 * 179.74367 * 6 5 4 8 8 C 1.39348 * 120.16810 * 179.72164 * 7 6 5 9 9 C 1.37992 * 119.94228 * 179.97438 * 8 7 6 10 10 C 1.38458 * 120.27642 * 0.02562 * 9 8 7 11 11 C 1.38103 * 120.33849 * 359.97242 * 10 9 8 12 12 C 1.38759 * 120.05582 * 0.02562 * 11 10 9 13 13 O 1.35647 * 120.14039 * 179.97438 * 12 11 10 14 14 C 1.34814 * 116.99929 * 354.37715 * 13 12 11 15 15 H 1.08001 * 120.00199 * 5.02102 * 14 13 12 16 16 C 1.38647 * 119.99882 * 185.02013 * 14 13 12 17 17 N 1.31558 * 120.00083 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00057 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47337 * 89.99620 * 18 16 14 20 20 H 1.48499 * 109.46835 * 210.00186 * 18 16 14 21 21 H 1.48505 * 109.46812 * 330.00139 * 18 16 14 22 22 C 1.39377 * 119.96385 * 359.46163 * 6 5 4 23 23 N 1.32054 * 119.98013 * 0.25973 * 22 6 5 24 24 H 1.08996 * 109.46862 * 299.99782 * 1 2 3 25 25 H 1.08997 * 109.47385 * 59.99765 * 1 2 3 26 26 H 1.08997 * 109.47227 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.98893 * 0.03208 * 4 3 2 28 28 H 1.08007 * 120.03060 * 359.95689 * 8 7 6 29 29 H 1.08004 * 119.85825 * 179.97438 * 9 8 7 30 30 H 1.08001 * 119.83019 * 179.70001 * 10 9 8 31 31 H 1.08003 * 119.97280 * 180.02562 * 11 10 9 32 32 H 0.97001 * 120.00198 * 179.97438 * 17 16 14 33 33 H 1.08002 * 120.01101 * 180.27580 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5441 2.1243 0.0005 5 7 3.8414 3.4081 -0.0050 6 6 2.8682 4.3167 0.0002 7 6 3.2018 5.7603 -0.0003 8 6 2.1857 6.7138 -0.0007 9 6 2.5017 8.0571 -0.0006 10 6 3.8255 8.4628 -0.0006 11 6 4.8417 7.5276 -0.0002 12 6 4.5398 6.1732 -0.0002 13 8 5.5365 5.2532 -0.0003 14 6 6.7971 5.7165 -0.1180 15 1 6.9829 6.7804 -0.1251 16 6 7.8548 4.8272 -0.2300 17 7 9.0849 5.2793 -0.3454 18 14 7.5333 2.9871 -0.2184 19 1 7.3130 2.5143 -1.6088 20 1 8.7043 2.2837 0.3640 21 1 6.3269 2.7006 0.5988 22 6 1.5353 3.9091 0.0002 23 7 1.2388 2.6223 0.0001 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 4.3337 1.3874 0.0004 28 1 1.1516 6.4019 -0.0013 29 1 1.7130 8.7950 -0.0013 30 1 4.0646 9.5160 -0.0054 31 1 5.8723 7.8506 0.0002 32 1 9.8250 4.6571 -0.4233 33 1 0.7453 4.6455 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587047.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:34 Heat of formation + Delta-G solvation = 35.319486 kcal Electronic energy + Delta-G solvation = -19750.057844 eV Core-core repulsion = 16674.550274 eV Total energy + Delta-G solvation = -3075.507570 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.02187 -40.64899 -38.21650 -35.43132 -34.45243 -33.84657 -30.94617 -30.47059 -29.76373 -27.33503 -25.77283 -25.66923 -23.07537 -22.48258 -19.82655 -19.26034 -19.04323 -18.51595 -17.63827 -16.47010 -16.20030 -16.17681 -15.92195 -15.58979 -15.49467 -15.23748 -14.79362 -14.37663 -14.30260 -14.05784 -13.84249 -13.49545 -13.24864 -12.68769 -12.63626 -12.52211 -12.33555 -12.26861 -11.83466 -11.58602 -11.37950 -11.24734 -10.91321 -10.06275 -9.76006 -9.15333 -8.52143 -8.40973 -6.19480 -0.67923 0.05937 0.33487 0.66212 0.77246 1.26397 1.31110 1.35735 1.61439 2.33227 2.54061 2.84265 3.06827 3.11319 3.23057 3.34626 3.37970 3.81342 4.02040 4.18066 4.28649 4.33100 4.37155 4.47601 4.54962 4.68248 4.87636 4.92034 5.06324 5.24285 5.38802 5.58003 5.69472 5.74711 5.88671 6.11195 6.22687 6.78955 6.84654 7.64423 8.58195 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.013545 B = 0.006743 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.655579 B = 4151.156239 C = 6200.349611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.068 6.068 3 C 0.037 3.963 4 C 0.066 3.934 5 N -0.434 5.434 6 C 0.119 3.881 7 C -0.147 4.147 8 C -0.043 4.043 9 C -0.185 4.185 10 C -0.055 4.055 11 C -0.252 4.252 12 C 0.149 3.851 13 O -0.194 6.194 14 C -0.397 4.397 15 H 0.082 0.918 16 C 0.017 3.983 17 N -0.921 5.921 18 Si 0.956 3.044 19 H -0.278 1.278 20 H -0.280 1.280 21 H -0.234 1.234 22 C 0.074 3.926 23 N -0.443 5.443 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.132 0.868 27 H 0.167 0.833 28 H 0.168 0.832 29 H 0.164 0.836 30 H 0.145 0.855 31 H 0.110 0.890 32 H 0.283 0.717 33 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.346 -4.984 0.824 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S 0.169 5.831 3 C -0.213 4.213 4 C -0.102 4.102 5 N -0.148 5.148 6 C -0.021 4.021 7 C -0.150 4.150 8 C -0.061 4.061 9 C -0.203 4.203 10 C -0.073 4.073 11 C -0.271 4.271 12 C 0.096 3.904 13 O -0.097 6.097 14 C -0.474 4.474 15 H 0.100 0.900 16 C -0.182 4.182 17 N -0.561 5.561 18 Si 0.779 3.221 19 H -0.204 1.204 20 H -0.206 1.206 21 H -0.157 1.157 22 C -0.090 4.090 23 N -0.160 5.160 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.150 0.850 27 H 0.184 0.816 28 H 0.185 0.815 29 H 0.181 0.819 30 H 0.162 0.838 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -19.477 -6.358 0.823 20.505 hybrid contribution 0.514 0.780 -0.098 0.939 sum -18.963 -5.578 0.724 19.779 Atomic orbital electron populations 1.23569 0.90990 1.07910 1.06729 1.85489 1.10657 0.95809 1.91150 1.24349 0.93427 1.00986 1.02506 1.23588 0.95402 0.93370 0.97880 1.68772 1.36376 1.01634 1.08062 1.20892 0.90943 0.93592 0.96668 1.17922 0.90602 0.90380 1.16134 1.21273 0.98239 0.91902 0.94727 1.21184 0.96257 0.95860 1.07042 1.21360 0.92648 0.99434 0.93905 1.21319 1.00809 0.92746 1.12258 1.19753 0.88716 0.89129 0.92850 1.83812 1.13481 1.32670 1.79739 1.20838 0.80795 0.94703 1.51034 0.90050 1.25160 0.93403 1.04293 0.95299 1.69732 0.99233 1.37652 1.49482 0.85409 0.78887 0.78355 0.79429 1.20355 1.20610 1.15651 1.24068 0.95813 0.93281 0.95871 1.68777 1.33577 1.01885 1.11791 0.89367 0.89396 0.84997 0.81560 0.81463 0.81867 0.83755 0.87258 0.90787 0.77216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 10.04 113.37 1.14 -0.76 16 2 S -0.07 -1.56 22.56 -56.49 -1.27 -2.84 16 3 C 0.04 1.13 7.00 84.84 0.59 1.72 16 4 C 0.07 2.41 10.98 84.99 0.93 3.35 16 5 N -0.43 -18.61 7.91 -183.71 -1.45 -20.07 16 6 C 0.12 4.42 6.73 41.86 0.28 4.70 16 7 C -0.15 -5.56 5.89 -19.94 -0.12 -5.68 16 8 C -0.04 -1.14 9.42 22.48 0.21 -0.93 16 9 C -0.19 -4.64 10.03 22.26 0.22 -4.42 16 10 C -0.06 -1.72 10.03 22.29 0.22 -1.49 16 11 C -0.25 -10.73 9.16 22.36 0.20 -10.52 16 12 C 0.15 6.94 6.65 22.83 0.15 7.09 16 13 O -0.19 -10.57 6.44 -21.45 -0.14 -10.71 16 14 C -0.40 -23.63 9.95 67.92 0.68 -22.96 16 15 H 0.08 5.03 5.44 -2.91 -0.02 5.02 16 16 C 0.02 1.03 5.49 84.83 0.47 1.50 16 17 N -0.92 -56.18 13.96 21.61 0.30 -55.88 16 18 Si 0.96 47.46 28.62 68.60 1.96 49.42 16 19 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.23 -11.37 6.70 99.48 0.67 -10.70 16 22 C 0.07 2.09 10.60 84.93 0.90 2.99 16 23 N -0.44 -12.76 9.58 -190.65 -1.83 -14.58 16 24 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.17 5.72 8.06 -2.91 -0.02 5.70 16 28 H 0.17 2.81 6.20 -2.91 -0.02 2.79 16 29 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 30 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 31 H 0.11 5.16 5.64 -2.91 -0.02 5.15 16 32 H 0.28 15.97 8.31 -92.71 -0.77 15.19 16 33 H 0.21 3.89 6.19 -2.91 -0.02 3.88 16 Total: -1.00 -72.97 302.32 4.57 -68.39 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 1.11 Total: 11.68 kcal Atomic # 6 Polarization: -31.30 SS G_CDS: 5.89 Total: -25.41 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -2.98 Total: -90.53 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -0.14 Total: -10.71 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.96 Total: 49.42 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -1.27 Total: -2.84 kcal Total: -72.97 4.57 -68.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587047.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.714 kcal (2) G-P(sol) polarization free energy of solvation -72.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds