Wall clock time and date at job start Tue Mar 31 2020 05:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76196 * 102.99695 * 2 1 4 4 C 1.39447 * 120.03325 * 179.72721 * 3 2 1 5 5 N 1.31977 * 120.11863 * 180.27628 * 4 3 2 6 6 C 1.32114 * 120.20148 * 359.97438 * 5 4 3 7 7 C 1.39349 * 120.06826 * 0.02562 * 6 5 4 8 8 C 1.48226 * 120.06356 * 180.02562 * 7 6 5 9 9 C 1.39488 * 120.05163 * 359.69560 * 8 7 6 10 10 C 1.37808 * 119.94067 * 179.72362 * 9 8 7 11 11 C 1.39026 * 120.05562 * 0.55863 * 10 9 8 12 12 O 1.35674 * 119.94421 * 179.74442 * 11 10 9 13 13 C 1.34816 * 116.99967 * 174.42300 * 12 11 10 14 14 H 1.07999 * 119.99989 * 5.05758 * 13 12 11 15 15 C 1.38661 * 120.00034 * 185.05292 * 13 12 11 16 16 N 1.31549 * 120.00120 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99953 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47024 * 90.00044 * 17 15 13 19 19 H 1.48494 * 109.46752 * 210.00140 * 17 15 13 20 20 H 1.48504 * 109.46918 * 330.00000 * 17 15 13 21 21 C 1.39022 * 120.10902 * 359.71475 * 11 10 9 22 22 C 1.37800 * 120.05564 * 0.02562 * 21 11 10 23 23 N 1.32615 * 120.03614 * 359.97438 * 3 2 1 24 24 H 1.08993 * 109.47516 * 59.99806 * 1 2 3 25 25 H 1.08999 * 109.47158 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47178 * 299.99529 * 1 2 3 27 27 H 1.08002 * 119.93949 * 0.25472 * 4 3 2 28 28 H 1.08002 * 119.96943 * 180.02562 * 6 5 4 29 29 H 1.07996 * 120.02887 * 359.97438 * 9 8 7 30 30 H 1.08002 * 119.97365 * 180.27595 * 10 9 8 31 31 H 0.96996 * 120.00225 * 179.97438 * 16 15 13 32 32 H 1.07999 * 119.96758 * 179.97438 * 21 11 10 33 33 H 1.08002 * 120.03075 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5436 2.1254 0.0057 5 7 3.8423 3.4109 0.0113 6 6 2.8805 4.3167 0.0109 7 6 1.5454 3.9174 0.0051 8 6 0.4665 4.9338 0.0041 9 6 0.7858 6.2916 0.0153 10 6 -0.2191 7.2346 0.0085 11 6 -1.5502 6.8335 0.0023 12 8 -2.5378 7.7639 0.0010 13 6 -3.8026 7.3136 -0.1218 14 1 -3.9993 6.2517 -0.1312 15 6 -4.8510 8.2139 -0.2361 16 7 -4.6114 9.5074 -0.2251 17 14 -6.6036 7.5901 -0.4055 18 1 -7.2077 7.4389 0.9426 19 1 -7.3998 8.5605 -1.1988 20 1 -6.5963 6.2749 -1.0951 21 6 -1.8711 5.4809 -0.0030 22 6 -0.8698 4.5341 -0.0017 23 7 1.2409 2.6218 -0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 4.3331 1.3885 0.0060 28 1 3.1292 5.3676 0.0150 29 1 1.8197 6.6036 0.0251 30 1 0.0276 8.2860 0.0127 31 1 -5.3447 10.1372 -0.3054 32 1 -2.9059 5.1719 -0.0074 33 1 -1.1195 3.4833 -0.0063 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243588550.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:36 Heat of formation + Delta-G solvation = 41.591526 kcal Electronic energy + Delta-G solvation = -18957.448024 eV Core-core repulsion = 15882.212430 eV Total energy + Delta-G solvation = -3075.235594 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.83069 -39.11313 -36.74762 -34.23405 -32.69695 -31.92443 -30.42971 -29.08116 -28.44459 -25.71765 -24.82035 -24.03352 -21.85366 -21.07767 -18.35971 -17.98288 -17.36950 -16.96419 -16.76045 -15.41737 -14.97969 -14.72116 -14.50865 -14.32211 -13.87263 -13.80494 -13.59074 -13.12498 -12.97473 -12.67740 -12.56578 -11.87759 -11.81842 -11.60966 -11.33141 -11.31066 -11.10675 -10.87757 -10.69444 -10.57869 -9.90854 -9.57459 -9.05290 -8.97796 -8.41052 -7.85894 -7.22261 -6.67787 -4.22999 0.57274 1.04496 1.25924 2.03895 2.08286 2.25799 3.01542 3.02637 3.07723 3.72740 3.79854 4.22501 4.34800 4.47395 4.54997 4.88601 4.96662 5.00651 5.06545 5.16578 5.26058 5.38681 5.56285 5.62504 5.67263 5.99378 6.19744 6.28237 6.45906 6.71279 6.81459 7.00825 7.08579 7.21511 7.34747 7.57562 7.77370 7.79103 8.76845 9.42735 10.48682 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.024009 B = 0.003547 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.956029 B = 7891.647071 C = 9037.574199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.073 6.073 3 C 0.082 3.918 4 C 0.036 3.964 5 N -0.416 5.416 6 C 0.026 3.974 7 C 0.185 3.815 8 C -0.172 4.172 9 C -0.043 4.043 10 C -0.194 4.194 11 C 0.168 3.832 12 O -0.162 6.162 13 C -0.392 4.392 14 H 0.097 0.903 15 C 0.042 3.958 16 N -0.851 5.851 17 Si 0.945 3.055 18 H -0.271 1.271 19 H -0.275 1.275 20 H -0.265 1.265 21 C -0.243 4.243 22 C -0.019 4.019 23 N -0.459 5.459 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.166 0.834 28 H 0.171 0.829 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.274 0.726 32 H 0.131 0.869 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.188 -13.824 0.228 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.164 5.836 3 C -0.171 4.171 4 C -0.130 4.130 5 N -0.129 5.129 6 C -0.138 4.138 7 C 0.045 3.955 8 C -0.175 4.175 9 C -0.062 4.062 10 C -0.214 4.214 11 C 0.111 3.889 12 O -0.062 6.062 13 C -0.468 4.468 14 H 0.115 0.885 15 C -0.164 4.164 16 N -0.484 5.484 17 Si 0.768 3.232 18 H -0.196 1.196 19 H -0.200 1.200 20 H -0.189 1.189 21 C -0.263 4.263 22 C -0.038 4.038 23 N -0.179 5.179 24 H 0.108 0.892 25 H 0.122 0.878 26 H 0.108 0.892 27 H 0.184 0.816 28 H 0.188 0.812 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.084 0.916 32 H 0.149 0.851 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.681 -14.368 0.227 17.327 hybrid contribution -1.761 0.764 -0.073 1.921 sum 7.920 -13.604 0.155 15.742 Atomic orbital electron populations 1.23480 0.93237 1.06131 1.07136 1.85354 1.08388 0.98464 1.91395 1.24076 0.93707 0.99327 0.99958 1.23150 0.94281 0.93627 1.01919 1.68310 1.36009 1.01260 1.07316 1.23622 0.89031 1.00470 1.00672 1.20792 0.93489 0.90011 0.91172 1.17757 0.91181 0.90680 1.17855 1.20661 0.98124 0.91104 0.96302 1.20114 0.89802 0.99644 1.11818 1.19553 0.89346 0.88742 0.91234 1.83938 1.14634 1.32099 1.75544 1.21474 0.79347 0.94060 1.51921 0.88536 1.25391 1.00161 0.94904 0.95985 1.70027 1.33467 1.01079 1.43805 0.85649 0.79748 0.78843 0.78911 1.19610 1.20005 1.18943 1.21124 1.00083 0.92469 1.12596 1.20823 0.91165 0.98713 0.93076 1.68797 1.33751 1.01386 1.13942 0.89222 0.87825 0.89239 0.81648 0.81230 0.86270 0.85767 0.91561 0.85089 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 10.04 101.05 1.01 -0.23 16 2 S -0.07 -0.79 22.57 -107.50 -2.43 -3.22 16 3 C 0.08 1.13 7.00 -16.76 -0.12 1.01 16 4 C 0.04 0.47 10.98 -17.04 -0.19 0.29 16 5 N -0.42 -5.97 10.48 -12.58 -0.13 -6.11 16 6 C 0.03 0.37 10.60 -17.02 -0.18 0.19 16 7 C 0.19 2.98 6.73 -82.80 -0.56 2.42 16 8 C -0.17 -2.98 5.88 -104.86 -0.62 -3.60 16 9 C -0.04 -0.71 9.42 -39.27 -0.37 -1.08 16 10 C -0.19 -3.79 9.98 -39.45 -0.39 -4.18 16 11 C 0.17 3.80 6.65 -39.00 -0.26 3.54 16 12 O -0.16 -4.33 9.75 0.32 0.00 -4.33 16 13 C -0.39 -10.33 9.48 30.89 0.29 -10.04 16 14 H 0.10 2.34 5.19 -52.49 -0.27 2.06 16 15 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 16 N -0.85 -23.63 13.67 55.48 0.76 -22.87 16 17 Si 0.94 19.35 29.55 -169.99 -5.02 14.33 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 19 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 21 C -0.24 -5.03 9.15 -39.45 -0.36 -5.39 16 22 C -0.02 -0.34 9.57 -39.28 -0.38 -0.72 16 23 N -0.46 -7.18 8.70 -8.46 -0.07 -7.26 16 24 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 26 H 0.09 0.92 8.14 -51.92 -0.42 0.49 16 27 H 0.17 1.68 8.06 -52.49 -0.42 1.25 16 28 H 0.17 2.02 6.18 -52.49 -0.32 1.70 16 29 H 0.12 1.55 6.19 -52.49 -0.32 1.23 16 30 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.13 2.68 5.62 -52.49 -0.30 2.39 16 33 H 0.12 1.98 7.54 -52.49 -0.40 1.59 16 LS Contribution 306.58 15.07 4.62 4.62 Total: -1.00 -29.25 306.58 -7.34 -36.59 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -2.86 Total: 5.03 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.21 Total: -16.79 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.55 Total: -36.23 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: 0.00 Total: -4.33 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.43 Total: -3.22 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.25 -7.34 -36.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588550.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.185 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds