Wall clock time and date at job start Tue Mar 31 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76196 * 102.99695 * 2 1 4 4 C 1.39447 * 120.03325 * 179.72721 * 3 2 1 5 5 N 1.31977 * 120.11863 * 180.27628 * 4 3 2 6 6 C 1.32114 * 120.20148 * 359.97438 * 5 4 3 7 7 C 1.39349 * 120.06826 * 0.02562 * 6 5 4 8 8 C 1.48226 * 120.06356 * 180.02562 * 7 6 5 9 9 C 1.39488 * 120.05163 * 359.69560 * 8 7 6 10 10 C 1.37808 * 119.94067 * 179.72362 * 9 8 7 11 11 C 1.39026 * 120.05562 * 0.55863 * 10 9 8 12 12 O 1.35674 * 119.94421 * 179.74442 * 11 10 9 13 13 C 1.34816 * 116.99967 * 174.42300 * 12 11 10 14 14 H 1.07999 * 119.99989 * 5.05758 * 13 12 11 15 15 C 1.38661 * 120.00034 * 185.05292 * 13 12 11 16 16 N 1.31549 * 120.00120 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99953 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47024 * 90.00044 * 17 15 13 19 19 H 1.48494 * 109.46752 * 210.00140 * 17 15 13 20 20 H 1.48504 * 109.46918 * 330.00000 * 17 15 13 21 21 C 1.39022 * 120.10902 * 359.71475 * 11 10 9 22 22 C 1.37800 * 120.05564 * 0.02562 * 21 11 10 23 23 N 1.32615 * 120.03614 * 359.97438 * 3 2 1 24 24 H 1.08993 * 109.47516 * 59.99806 * 1 2 3 25 25 H 1.08999 * 109.47158 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47178 * 299.99529 * 1 2 3 27 27 H 1.08002 * 119.93949 * 0.25472 * 4 3 2 28 28 H 1.08002 * 119.96943 * 180.02562 * 6 5 4 29 29 H 1.07996 * 120.02887 * 359.97438 * 9 8 7 30 30 H 1.08002 * 119.97365 * 180.27595 * 10 9 8 31 31 H 0.96996 * 120.00225 * 179.97438 * 16 15 13 32 32 H 1.07999 * 119.96758 * 179.97438 * 21 11 10 33 33 H 1.08002 * 120.03075 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5436 2.1254 0.0057 5 7 3.8423 3.4109 0.0113 6 6 2.8805 4.3167 0.0109 7 6 1.5454 3.9174 0.0051 8 6 0.4665 4.9338 0.0041 9 6 0.7858 6.2916 0.0153 10 6 -0.2191 7.2346 0.0085 11 6 -1.5502 6.8335 0.0023 12 8 -2.5378 7.7639 0.0010 13 6 -3.8026 7.3136 -0.1218 14 1 -3.9993 6.2517 -0.1312 15 6 -4.8510 8.2139 -0.2361 16 7 -4.6114 9.5074 -0.2251 17 14 -6.6036 7.5901 -0.4055 18 1 -7.2077 7.4389 0.9426 19 1 -7.3998 8.5605 -1.1988 20 1 -6.5963 6.2749 -1.0951 21 6 -1.8711 5.4809 -0.0030 22 6 -0.8698 4.5341 -0.0017 23 7 1.2409 2.6218 -0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 4.3331 1.3885 0.0060 28 1 3.1292 5.3676 0.0150 29 1 1.8197 6.6036 0.0251 30 1 0.0276 8.2860 0.0127 31 1 -5.3447 10.1372 -0.3054 32 1 -2.9059 5.1719 -0.0074 33 1 -1.1195 3.4833 -0.0063 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243588550.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:35 Heat of formation + Delta-G solvation = 23.822993 kcal Electronic energy + Delta-G solvation = -18958.218525 eV Core-core repulsion = 15882.212430 eV Total energy + Delta-G solvation = -3076.006096 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.99987 -40.73877 -38.34401 -35.40338 -34.43694 -33.29310 -31.96179 -29.96438 -29.75481 -27.50892 -26.00627 -25.33321 -23.37600 -22.55042 -20.02465 -19.31338 -18.59176 -18.45149 -17.84158 -16.73953 -16.33620 -16.12600 -16.11763 -15.60707 -15.34717 -15.23809 -14.63194 -14.43257 -14.17731 -13.91383 -13.67715 -13.59206 -13.30052 -12.90814 -12.73666 -12.63183 -12.41508 -12.38738 -12.14400 -11.65224 -11.29204 -11.21279 -10.71402 -10.19900 -9.91997 -9.03277 -8.55703 -8.52924 -6.20106 -0.60929 -0.10712 0.33596 0.53664 0.81840 1.18019 1.35115 1.43835 1.52191 2.14223 2.48946 2.87542 3.02132 3.15684 3.27803 3.40031 3.45289 3.86738 4.05520 4.12711 4.16917 4.27590 4.32759 4.35601 4.49058 4.68224 4.87616 4.91380 5.06682 5.16841 5.20970 5.47461 5.55430 5.60810 5.95476 6.00326 6.17180 6.65347 6.91000 7.66458 8.68605 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.024009 B = 0.003547 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.956029 B = 7891.647071 C = 9037.574199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.043 6.043 3 C 0.062 3.938 4 C 0.052 3.948 5 N -0.427 5.427 6 C 0.032 3.968 7 C 0.158 3.842 8 C -0.148 4.148 9 C -0.031 4.031 10 C -0.200 4.200 11 C 0.135 3.865 12 O -0.217 6.217 13 C -0.417 4.417 14 H 0.105 0.895 15 C -0.017 4.017 16 N -0.912 5.912 17 Si 1.017 2.983 18 H -0.262 1.262 19 H -0.270 1.270 20 H -0.253 1.253 21 C -0.248 4.248 22 C -0.025 4.025 23 N -0.469 5.469 24 H 0.081 0.919 25 H 0.132 0.868 26 H 0.081 0.919 27 H 0.198 0.802 28 H 0.195 0.805 29 H 0.165 0.835 30 H 0.130 0.870 31 H 0.275 0.725 32 H 0.124 0.876 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.483 -17.054 0.182 20.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.194 5.806 3 C -0.190 4.190 4 C -0.115 4.115 5 N -0.141 5.141 6 C -0.130 4.130 7 C 0.018 3.982 8 C -0.151 4.151 9 C -0.050 4.050 10 C -0.219 4.219 11 C 0.082 3.918 12 O -0.122 6.122 13 C -0.493 4.493 14 H 0.122 0.878 15 C -0.216 4.216 16 N -0.549 5.549 17 Si 0.836 3.164 18 H -0.187 1.187 19 H -0.195 1.195 20 H -0.177 1.177 21 C -0.267 4.267 22 C -0.044 4.044 23 N -0.189 5.189 24 H 0.100 0.900 25 H 0.150 0.850 26 H 0.100 0.900 27 H 0.215 0.785 28 H 0.211 0.789 29 H 0.182 0.818 30 H 0.148 0.852 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.030 -17.642 0.186 21.354 hybrid contribution -1.920 1.283 -0.041 2.310 sum 10.109 -16.360 0.145 19.232 Atomic orbital electron populations 1.23584 0.92482 1.07808 1.06343 1.85290 1.09137 0.95552 1.90582 1.24607 0.93928 1.00649 0.99853 1.23772 0.94951 0.93920 0.98854 1.68428 1.35869 1.01827 1.07938 1.23947 0.88184 1.01757 0.99067 1.20671 0.93654 0.90090 0.93806 1.18080 0.91296 0.91639 1.14070 1.21068 0.99577 0.90181 0.94194 1.20407 0.89222 1.00838 1.11445 1.20105 0.90041 0.89308 0.92322 1.83924 1.15254 1.33573 1.79419 1.21881 0.79983 0.94677 1.52768 0.87806 1.26585 1.04525 0.94972 0.95472 1.70158 1.34752 1.02549 1.47459 0.84604 0.73929 0.78612 0.79228 1.18729 1.19493 1.17657 1.21177 1.00524 0.92308 1.12696 1.20976 0.91313 0.98960 0.93117 1.68740 1.34919 1.01587 1.13657 0.89990 0.84981 0.89986 0.78545 0.78876 0.81790 0.85193 0.91547 0.85783 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 10.04 113.37 1.14 -1.02 16 2 S -0.04 -0.78 22.57 -56.49 -1.27 -2.05 16 3 C 0.06 1.49 7.00 84.87 0.59 2.09 16 4 C 0.05 1.14 10.98 84.96 0.93 2.07 16 5 N -0.43 -10.57 10.48 -193.70 -2.03 -12.60 16 6 C 0.03 0.81 10.60 84.92 0.90 1.71 16 7 C 0.16 4.60 6.73 41.88 0.28 4.88 16 8 C -0.15 -4.84 5.88 -20.02 -0.12 -4.96 16 9 C -0.03 -0.98 9.42 22.47 0.21 -0.76 16 10 C -0.20 -7.82 9.98 22.36 0.22 -7.59 16 11 C 0.13 6.37 6.65 22.65 0.15 6.52 16 12 O -0.22 -12.45 9.75 -21.76 -0.21 -12.66 16 13 C -0.42 -23.36 9.48 67.92 0.64 -22.72 16 14 H 0.10 5.33 5.19 -2.91 -0.02 5.32 16 15 C -0.02 -0.91 5.49 84.84 0.47 -0.44 16 16 N -0.91 -53.97 13.67 21.61 0.30 -53.67 16 17 Si 1.02 41.21 29.55 68.60 2.03 43.24 16 18 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 19 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 20 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 21 C -0.25 -10.52 9.15 22.35 0.20 -10.31 16 22 C -0.02 -0.89 9.57 22.47 0.22 -0.67 16 23 N -0.47 -13.36 8.70 -180.68 -1.57 -14.93 16 24 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.20 3.01 8.06 -2.91 -0.02 2.99 16 28 H 0.19 3.70 6.18 -2.91 -0.02 3.68 16 29 H 0.16 3.57 6.19 -2.91 -0.02 3.56 16 30 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 31 H 0.28 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.12 5.33 5.62 -2.91 -0.02 5.32 16 33 H 0.13 4.31 7.54 -2.91 -0.02 4.29 16 Total: -1.00 -67.83 306.58 4.23 -63.59 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 1.16 Total: 20.29 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 5.84 Total: -31.21 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -3.31 Total: -81.20 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.21 Total: -12.66 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -1.27 Total: -2.05 kcal Total: -67.83 4.23 -63.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588550.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.414 kcal (2) G-P(sol) polarization free energy of solvation -67.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds