Wall clock time and date at job start Tue Mar 31 2020 05:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80996 * 1 3 3 C 1.76201 * 100.00097 * 2 1 4 4 C 1.39470 * 120.49334 * 180.02562 * 3 2 1 5 5 C 1.39274 * 118.21308 * 179.97438 * 4 3 2 6 6 C 1.48213 * 120.51474 * 180.02562 * 5 4 3 7 7 C 1.39498 * 120.04860 * 359.70517 * 6 5 4 8 8 C 1.37804 * 119.93859 * 179.76503 * 7 6 5 9 9 C 1.39035 * 120.05619 * 0.53450 * 8 7 6 10 10 O 1.35661 * 119.94163 * 179.72151 * 9 8 7 11 11 C 1.34816 * 116.99729 * 174.42513 * 10 9 8 12 12 H 1.07998 * 120.00046 * 5.05809 * 11 10 9 13 13 C 1.38665 * 120.00113 * 185.05456 * 11 10 9 14 14 N 1.31549 * 120.00162 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00179 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47108 * 90.00052 * 15 13 11 17 17 H 1.48504 * 109.47233 * 210.00255 * 15 13 11 18 18 H 1.48495 * 109.47246 * 330.00102 * 15 13 11 19 19 C 1.39026 * 120.10864 * 359.69370 * 9 8 7 20 20 C 1.37796 * 120.05940 * 0.04691 * 19 9 8 21 21 N 1.33471 * 118.97866 * 0.02562 * 5 4 3 22 22 C 1.31635 * 120.88267 * 359.97438 * 21 5 4 23 23 N 1.31788 * 121.98075 * 359.97438 * 22 21 5 24 24 H 1.09003 * 109.46941 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47276 * 299.99693 * 1 2 3 26 26 H 1.08994 * 109.47242 * 60.00074 * 1 2 3 27 27 H 1.08001 * 120.89100 * 359.97438 * 4 3 2 28 28 H 1.07990 * 120.03154 * 359.97438 * 7 6 5 29 29 H 1.08004 * 119.96949 * 180.25333 * 8 7 6 30 30 H 0.96996 * 120.00464 * 179.97438 * 14 13 11 31 31 H 1.08001 * 119.96859 * 180.02562 * 19 9 8 32 32 H 1.07992 * 120.03083 * 179.97438 * 20 19 9 33 33 H 1.08000 * 119.00842 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.4224 2.2235 -0.0005 5 6 3.6095 3.6036 -0.0011 6 6 4.9759 4.1778 -0.0022 7 6 6.0877 3.3353 0.0034 8 6 7.3571 3.8715 -0.0026 9 6 7.5302 5.2511 -0.0030 10 8 8.7809 5.7765 -0.0032 11 6 8.8821 7.1158 -0.1203 12 1 7.9911 7.7261 -0.1262 13 6 10.1300 7.7096 -0.2330 14 7 11.2153 6.9662 -0.2263 15 14 10.2702 9.5652 -0.3960 16 1 10.3775 10.1740 0.9542 17 1 11.4798 9.9026 -1.1888 18 1 9.0647 10.0942 -1.0831 19 6 6.4237 6.0928 -0.0038 20 6 5.1523 5.5615 -0.0032 21 7 2.5394 4.4013 -0.0005 22 6 1.3225 3.8993 0.0000 23 7 1.1036 2.5997 -0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 4.2663 1.5495 -0.0005 28 1 5.9537 2.2637 0.0091 29 1 8.2182 3.2196 -0.0023 30 1 12.0883 7.3815 -0.3055 31 1 6.5608 7.1641 -0.0046 32 1 4.2932 6.2158 -0.0034 33 1 0.4781 4.5727 0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243589644.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:31 Heat of formation + Delta-G solvation = 42.387777 kcal Electronic energy + Delta-G solvation = -18741.259859 eV Core-core repulsion = 15666.058793 eV Total energy + Delta-G solvation = -3075.201066 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.71144 -39.09328 -36.75885 -33.70117 -32.59786 -32.14030 -30.36372 -29.22637 -28.69030 -25.72707 -24.52538 -24.06205 -21.80370 -21.15918 -18.38888 -18.13624 -17.24655 -17.02994 -15.74899 -15.42587 -14.94216 -14.70641 -14.57707 -14.41010 -13.91825 -13.85297 -13.66731 -13.50854 -12.90161 -12.69008 -12.58274 -11.88406 -11.84284 -11.23992 -11.19456 -11.16338 -10.89438 -10.78706 -10.60441 -10.50417 -9.87302 -9.52847 -9.15265 -8.95896 -8.37034 -7.97244 -7.28404 -6.65965 -4.21011 0.76327 0.93914 1.26944 1.93599 2.12897 2.32578 3.03802 3.04910 3.09921 3.81450 3.84643 4.17959 4.29655 4.51611 4.82529 4.90201 4.91908 4.97322 5.02542 5.21486 5.36000 5.52844 5.56683 5.66890 5.71560 6.04292 6.24540 6.33550 6.49640 6.74608 6.84194 6.94607 7.09091 7.23387 7.26923 7.60572 7.79587 8.16638 8.78763 9.44664 10.50492 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.044002 B = 0.002948 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.181720 B = 9494.360765 C =10108.693351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.062 6.062 3 C 0.161 3.839 4 C -0.219 4.219 5 C 0.269 3.731 6 C -0.181 4.181 7 C -0.038 4.038 8 C -0.197 4.197 9 C 0.171 3.829 10 O -0.161 6.161 11 C -0.392 4.392 12 H 0.098 0.902 13 C 0.042 3.958 14 N -0.851 5.851 15 Si 0.945 3.055 16 H -0.271 1.271 17 H -0.275 1.275 18 H -0.265 1.265 19 C -0.246 4.246 20 C -0.012 4.012 21 N -0.534 5.534 22 C 0.315 3.685 23 N -0.553 5.553 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.148 0.852 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.274 0.726 31 H 0.133 0.867 32 H 0.123 0.877 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.349 -8.833 0.223 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.175 5.825 3 C -0.093 4.093 4 C -0.248 4.248 5 C 0.128 3.872 6 C -0.183 4.183 7 C -0.058 4.058 8 C -0.217 4.217 9 C 0.113 3.887 10 O -0.061 6.061 11 C -0.467 4.467 12 H 0.115 0.885 13 C -0.165 4.165 14 N -0.484 5.484 15 Si 0.769 3.231 16 H -0.196 1.196 17 H -0.200 1.200 18 H -0.189 1.189 19 C -0.265 4.265 20 C -0.031 4.031 21 N -0.251 5.251 22 C 0.023 3.977 23 N -0.274 5.274 24 H 0.118 0.882 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.165 0.835 28 H 0.136 0.864 29 H 0.142 0.858 30 H 0.084 0.916 31 H 0.150 0.850 32 H 0.141 0.859 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -15.918 -9.318 0.220 18.446 hybrid contribution -0.183 1.464 -0.066 1.477 sum -16.101 -7.854 0.154 17.915 Atomic orbital electron populations 1.23418 0.93858 1.05898 1.07054 1.85787 1.08029 0.97694 1.90967 1.23259 0.92021 0.98928 0.95139 1.22330 0.97022 0.97177 1.08295 1.20105 0.92733 0.88519 0.85841 1.17815 0.88322 0.93704 1.18496 1.20682 0.91063 0.98242 0.95810 1.20110 0.96946 0.92486 1.12121 1.19568 0.85584 0.92501 0.90998 1.83933 1.22114 1.24658 1.75438 1.21492 0.94666 0.78710 1.51869 0.88452 1.25400 0.94059 1.01039 0.95975 1.70028 0.98245 1.36313 1.43820 0.85641 0.78708 0.79849 0.78908 1.19612 1.20039 1.18902 1.21144 0.91862 1.00733 1.12772 1.20897 0.96483 0.93557 0.92189 1.68488 0.99134 1.40390 1.17093 1.24763 0.94090 0.89054 0.89765 1.68631 1.34043 1.04710 1.19984 0.88182 0.89253 0.89256 0.83460 0.86409 0.85811 0.91569 0.84985 0.85895 0.79004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 9.68 101.05 0.98 -0.10 16 2 S -0.06 -0.66 22.74 -107.50 -2.44 -3.11 16 3 C 0.16 2.20 7.00 -16.53 -0.12 2.08 16 4 C -0.22 -3.19 9.30 -38.74 -0.36 -3.55 16 5 C 0.27 4.43 6.75 -82.67 -0.56 3.88 16 6 C -0.18 -3.23 5.88 -104.86 -0.62 -3.85 16 7 C -0.04 -0.66 9.43 -39.27 -0.37 -1.03 16 8 C -0.20 -3.92 9.98 -39.44 -0.39 -4.32 16 9 C 0.17 3.91 6.65 -38.99 -0.26 3.65 16 10 O -0.16 -4.35 9.75 0.36 0.00 -4.35 16 11 C -0.39 -10.38 9.48 30.89 0.29 -10.09 16 12 H 0.10 2.37 5.19 -52.49 -0.27 2.10 16 13 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 14 N -0.85 -23.76 13.67 55.48 0.76 -23.00 16 15 Si 0.95 19.49 29.55 -169.99 -5.02 14.47 16 16 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 17 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 18 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 19 C -0.25 -5.15 9.15 -39.45 -0.36 -5.51 16 20 C -0.01 -0.22 9.58 -39.28 -0.38 -0.60 16 21 N -0.53 -8.48 9.58 -11.20 -0.11 -8.59 16 22 C 0.32 4.22 12.28 -92.30 -1.13 3.09 16 23 N -0.55 -7.48 9.29 -13.43 -0.12 -7.61 16 24 H 0.10 0.57 8.14 -51.91 -0.42 0.15 16 25 H 0.09 0.75 8.14 -51.91 -0.42 0.33 16 26 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 27 H 0.15 1.88 6.31 -52.49 -0.33 1.55 16 28 H 0.12 1.65 6.26 -52.49 -0.33 1.32 16 29 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.13 2.74 5.62 -52.49 -0.30 2.44 16 32 H 0.12 2.14 7.57 -52.49 -0.40 1.74 16 33 H 0.19 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 306.35 15.07 4.62 4.62 Total: -1.00 -29.51 306.35 -8.56 -38.07 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -2.87 Total: 4.85 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -3.37 Total: -15.36 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.53 Total: -39.19 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: 0.00 Total: -4.35 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -2.44 Total: -3.11 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.51 -8.56 -38.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589644.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.462 kcal (2) G-P(sol) polarization free energy of solvation -29.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds